Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.3e-164 583.2 339 100.0
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.1e-162 575.9 339 99.1
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 9.4e-147 523.9 334 90.7
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 5.2e-121 438.3 336 77.4
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 7.8e-109 397.9 335 73.7
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 3.0e-92 342.8 288 67.4
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 6.2e-90 335.1 176 94.9
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 1.6e-69 267.3 342 47.1
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 4.6e-69 265.8 338 41.7
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 4.6e-69 265.8 339 42.5
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 5.1e-68 262.3 342 45.6
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 8.7e-68 261.5 322 44.1
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 8.7e-68 261.5 318 46.9
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 8.7e-68 261.5 339 46.9
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 1.1e-67 261.2 319 41.7
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 2.5e-67 260.0 343 41.1
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 3.3e-67 259.6 339 41.0
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 4.3e-67 259.2 343 45.5
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 2.8e-66 256.5 345 40.6
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 4.8e-66 255.8 339 41.6
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 4.8e-66 255.8 339 40.4
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 6.3e-66 255.4 339 41.3
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 1.1e-65 254.6 339 45.1
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 1.4e-65 254.2 316 40.8
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 1.4e-65 254.2 322 44.4
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 5.3e-65 252.3 309 43.0
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 9.0e-65 251.5 321 42.4
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 9.0e-65 251.5 322 46.0
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 1.2e-64 251.1 326 45.7
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 2.0e-64 250.4 321 42.4
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 2.6e-64 250.0 338 41.1
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 2.6e-64 250.0 318 44.3
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 2.6e-64 250.0 342 39.5
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 2.6e-64 250.0 333 40.5
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 2.6e-64 250.0 340 42.1
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 3.4e-64 249.6 338 41.7
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 4.5e-64 249.2 319 42.3
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 5.9e-64 248.8 337 40.9
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 5.9e-64 248.8 318 41.2
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 1.0e-63 248.1 316 41.5
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 1.0e-63 248.1 342 40.1
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 1.0e-63 248.1 336 39.9
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 2.9e-63 246.5 323 40.2
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 2.9e-63 246.5 321 41.1
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 2.9e-63 246.5 340 41.5
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 2.9e-63 246.5 338 39.9
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 2.9e-63 246.5 322 44.7
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 3.8e-63 246.1 322 39.8
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 3.8e-63 246.1 314 43.3
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 5.0e-63 245.7 329 43.8
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 5.0e-63 245.7 342 40.6
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 6.5e-63 245.4 318 40.9
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 8.5e-63 245.0 318 40.9
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 8.5e-63 245.0 338 39.3
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 8.5e-63 245.0 322 40.1
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 1.1e-62 244.6 339 38.6
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 1.1e-62 244.6 322 40.1
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 1.1e-62 244.6 318 41.5
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 1.4e-62 244.2 353 38.5
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 2.5e-62 243.4 313 41.9
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.5e-62 243.4 322 44.4
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 2.5e-62 243.4 322 40.1
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 2.5e-62 243.4 341 39.0
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 4.2e-62 242.7 320 40.3
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 5.5e-62 242.3 321 39.9
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 7.2e-62 241.9 321 39.9
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 1.2e-61 241.1 318 39.9
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.2e-61 241.1 322 45.3
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 2.1e-61 240.4 335 38.5
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 2.7e-61 240.0 324 40.4
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 2.7e-61 240.0 315 41.3
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 3.6e-61 239.6 341 38.1
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 4.6e-61 239.2 313 41.2
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 6.1e-61 238.8 251 52.2
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 1.4e-60 237.7 313 40.9
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 1.8e-60 237.3 345 39.1
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 3.0e-60 236.5 322 42.5
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 3.9e-60 236.1 318 39.3
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 5.1e-60 235.7 295 46.8
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 6.7e-60 235.3 342 44.7
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 6.7e-60 235.3 342 39.2
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 8.8e-60 235.0 318 42.1
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 1.1e-59 234.6 319 42.9
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 1.5e-59 234.2 314 39.2
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.0e-59 233.8 210 52.4
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 2.5e-59 233.4 323 40.2
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 5.7e-59 232.3 279 42.7
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 1.7e-58 230.7 309 43.4
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 2.2e-58 230.3 340 44.4
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 3.7e-58 229.6 331 41.1
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 8.2e-58 228.4 315 40.6
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 8.2e-58 228.4 227 46.7
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 8.2e-58 228.4 312 41.0
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 1.1e-57 228.0 313 46.6
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 1.1e-57 228.0 331 41.1
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 1.8e-57 227.3 382 35.6
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 5.3e-57 225.7 335 41.8
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 5.3e-57 225.7 225 47.1
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 6.9e-57 225.3 322 40.7
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 1.2e-56 224.6 339 36.3
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 2.0e-56 223.8 313 38.3
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 5.9e-56 222.2 334 45.2
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 1.0e-55 221.5 305 39.3
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.2e-55 220.3 309 41.4
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 3.8e-55 219.5 334 44.9
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 5.0e-55 219.2 307 38.4
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 5.0e-55 219.2 318 46.2
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 3.2e-54 216.5 319 45.8
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 5.5e-54 215.7 318 44.7
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 9.4e-54 214.9 245 42.0
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 1.2e-53 214.5 337 34.1
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 1.2e-53 214.5 337 35.3
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 1.2e-53 214.5 337 35.3
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 1.2e-53 214.5 374 34.0
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 1.2e-53 214.5 318 45.9
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 1.6e-53 214.2 318 44.3
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 2.1e-53 213.8 227 43.6
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 2.7e-53 213.4 196 51.5
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 1.4e-52 211.1 337 34.7
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 2.3e-52 210.3 337 34.4
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 3.0e-52 209.9 334 42.8
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 3.0e-52 209.9 313 44.4
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 6.7e-52 208.8 336 42.9
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 8.8e-52 208.4 208 48.1
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 8.8e-52 208.4 335 41.8
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 8.8e-52 208.4 333 42.0
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 1.5e-51 207.6 335 43.0
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 1.5e-51 207.6 336 42.3
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 1.5e-51 207.6 336 42.3
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 2.6e-51 206.8 335 41.2
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 2.6e-51 206.8 335 41.5
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 2.6e-51 206.8 322 44.4
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.8e-50 203.4 321 42.1
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 2.8e-50 203.4 324 33.3
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 3.7e-50 203.0 318 42.5
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 3.7e-50 203.0 318 42.5
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 6.3e-50 202.2 336 40.8
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 8.2e-50 201.8 318 42.1
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 8.2e-50 201.8 323 37.2
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 1.1e-49 201.4 375 36.3
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 1.4e-49 201.1 336 40.5
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 1.4e-49 201.1 271 41.3
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 3.1e-49 199.9 323 41.8
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 3.8e-47 193.0 322 39.8
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 1.1e-46 191.4 356 33.4
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 1.4e-46 191.0 268 39.6
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 4.2e-46 189.5 190 47.4
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.0e-43 180.6 267 42.7
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 1.5e-38 164.5 341 30.5
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 1.2e-37 161.4 242 37.2
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.6e-35 153.7 148 49.3
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 1.3e-34 151.4 267 42.3
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 1.1e-33 148.3 321 29.9
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 2.4e-33 147.1 227 34.4
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.9e-31 140.2 227 39.2
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.9e-31 140.2 227 39.2
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 5.0e-31 139.4 227 34.8
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.4e-28 131.3 136 50.7
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 4.0e-28 129.8 186 34.9
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 1.7e-26 124.4 290 27.9
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.8e-26 123.6 121 52.9
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 4.4e-19 99.8 191 31.4
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 9.8e-19 98.6 99 45.5
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.7e-18 97.8 107 50.5
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.4e-17 94.7 210 29.5
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 6.8e-12 75.9 65 46.2
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 4.1e-09 66.6 147 38.8
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 7.3e-06 55.8 45 51.1


User provided reference genes

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