Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.8e-96 355.9 177 100.0
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.5e-90 335.5 176 94.9
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 3.2e-90 335.1 176 94.3
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.5e-82 309.7 172 89.0
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 3.5e-68 261.9 174 73.6
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 4.6e-68 261.5 173 74.0
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 5.2e-48 194.9 177 57.1
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 8.9e-48 194.1 177 55.4
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 6.4e-46 188.0 174 55.2
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 2.4e-45 186.0 157 57.3
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 2.4e-45 186.0 177 53.1
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 2.4e-45 186.0 174 53.4
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 3.2e-45 185.7 130 69.2
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 7.1e-45 184.5 179 52.5
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 1.2e-44 183.7 171 53.2
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 1.2e-44 183.7 174 52.3
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 1.6e-44 183.3 177 52.0
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 2.1e-44 183.0 174 52.3
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.1e-44 183.0 168 51.2
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 3.5e-44 182.2 171 54.4
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 4.6e-44 181.8 171 52.6
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 6.0e-44 181.4 157 56.1
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 6.0e-44 181.4 174 52.9
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 7.8e-44 181.0 171 52.6
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 2.3e-43 179.5 174 52.3
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 2.3e-43 179.5 158 55.1
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 2.3e-43 179.5 147 57.8
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 6.6e-43 177.9 171 50.9
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 6.6e-43 177.9 148 54.1
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 8.7e-43 177.6 177 50.3
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 8.7e-43 177.6 152 57.2
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 8.7e-43 177.6 171 51.5
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 1.5e-42 176.8 174 52.3
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 1.9e-42 176.4 153 55.6
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 2.5e-42 176.0 156 55.8
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 2.5e-42 176.0 153 54.9
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 4.3e-42 175.3 154 55.2
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 4.3e-42 175.3 154 55.2
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 5.6e-42 174.9 152 53.9
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 5.6e-42 174.9 148 55.4
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 5.6e-42 174.9 153 55.6
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 7.3e-42 174.5 173 49.7
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 7.3e-42 174.5 156 54.5
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 1.3e-41 173.7 170 51.8
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 1.3e-41 173.7 149 53.0
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 1.3e-41 173.7 154 54.5
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 2.1e-41 172.9 177 51.4
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 2.1e-41 172.9 175 49.7
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 2.8e-41 172.6 174 51.1
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 2.8e-41 172.6 156 55.1
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 2.8e-41 172.6 174 51.7
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 2.8e-41 172.6 177 50.3
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 3.6e-41 172.2 174 51.1
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 4.8e-41 171.8 153 52.3
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 6.2e-41 171.4 154 52.6
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 6.2e-41 171.4 173 51.4
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 8.1e-41 171.0 170 48.8
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 8.1e-41 171.0 156 52.6
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 8.1e-41 171.0 156 52.6
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 8.1e-41 171.0 175 48.6
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 1.1e-40 170.6 158 50.0
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 1.1e-40 170.6 174 50.0
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 1.4e-40 170.2 172 47.7
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 1.4e-40 170.2 151 54.3
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 1.4e-40 170.2 159 52.2
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 1.4e-40 170.2 171 49.7
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 1.4e-40 170.2 170 49.4
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 1.8e-40 169.9 154 51.3
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 1.8e-40 169.9 154 51.3
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 2.4e-40 169.5 144 56.9
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 2.4e-40 169.5 174 48.3
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 2.4e-40 169.5 161 51.6
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 4.0e-40 168.7 174 51.1
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 5.3e-40 168.3 151 51.7
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 5.3e-40 168.3 154 53.9
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 5.3e-40 168.3 169 48.5
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 5.3e-40 168.3 180 47.8
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 6.9e-40 167.9 172 45.9
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 6.9e-40 167.9 153 54.2
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 6.9e-40 167.9 153 52.9
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 6.9e-40 167.9 154 50.6
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 9.0e-40 167.5 152 50.0
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 9.0e-40 167.5 169 49.1
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 9.0e-40 167.5 154 50.6
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 9.0e-40 167.5 174 47.7
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 9.0e-40 167.5 176 46.6
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 1.2e-39 167.2 155 50.3
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 1.2e-39 167.2 154 50.0
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 1.5e-39 166.8 167 48.5
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 1.5e-39 166.8 180 47.8
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 2.0e-39 166.4 168 47.6
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 2.0e-39 166.4 150 54.7
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 2.6e-39 166.0 158 49.4
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 3.4e-39 165.6 149 51.0
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 3.4e-39 165.6 156 48.7
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 3.4e-39 165.6 148 53.4
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 4.4e-39 165.2 167 47.9
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 4.4e-39 165.2 171 46.8
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 4.4e-39 165.2 171 46.8
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 5.8e-39 164.9 163 50.3
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 5.8e-39 164.9 170 46.5
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 5.8e-39 164.9 167 47.9
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 7.6e-39 164.5 177 49.7
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 1.3e-38 163.7 149 53.0
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 1.3e-38 163.7 174 48.3
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 2.2e-38 162.9 153 50.3
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 2.2e-38 162.9 154 49.4
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 2.9e-38 162.5 148 53.4
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 2.9e-38 162.5 148 52.7
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 4.9e-38 161.8 171 46.2
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 4.9e-38 161.8 171 46.2
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 4.9e-38 161.8 148 52.7
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 6.4e-38 161.4 167 45.5
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 6.4e-38 161.4 167 45.5
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 8.4e-38 161.0 157 49.0
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.9e-37 159.8 157 48.4
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 1.9e-37 159.8 168 46.4
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 1.9e-37 159.8 168 46.4
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 2.4e-37 159.5 167 45.5
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 3.2e-37 159.1 146 52.7
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 7.1e-37 157.9 167 44.9
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 7.1e-37 157.9 158 47.5
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 9.3e-37 157.5 168 46.4
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 9.3e-37 157.5 157 47.8
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 9.3e-37 157.5 157 47.8
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.2e-36 157.1 154 45.5
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 1.2e-36 157.1 157 47.8
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.1e-36 156.4 157 44.6
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 3.5e-36 155.6 154 46.1
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 3.5e-36 155.6 154 46.1
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 4.6e-36 155.2 157 46.5
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.0e-35 154.1 166 45.8
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 1.7e-35 153.3 157 45.9
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 1.7e-35 153.3 154 46.1
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 2.3e-35 152.9 158 48.1
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 6.6e-35 151.4 168 43.5
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 6.6e-35 151.4 148 48.6
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 2.5e-34 149.4 166 43.4
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 3.3e-34 149.1 166 43.4
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 2.1e-33 146.4 157 45.2
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 2.8e-33 146.0 154 44.8
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 6.9e-32 141.4 152 46.1
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 7.1e-29 131.3 136 49.3
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.2e-28 130.6 154 40.9
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 2.3e-27 126.3 179 39.1
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.5e-26 123.6 121 51.2
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 3.3e-26 122.5 157 43.3
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 5.6e-26 121.7 154 37.7
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 7.4e-26 121.3 106 56.6
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 7.6e-23 111.3 100 54.0
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 8.4e-22 107.8 103 47.6
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.5e-21 106.3 103 47.6
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 2.5e-21 106.3 165 37.6
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 3.2e-21 105.9 175 35.4
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 1.3e-19 100.5 149 36.2
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 6.7e-19 98.2 150 37.3
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.1e-18 97.4 107 50.5
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.5e-18 96.3 99 44.4
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 2.8e-17 92.8 150 32.7
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 4.8e-17 92.0 150 33.3
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 4.8e-17 92.0 150 33.3
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 1.2e-15 87.4 150 32.0
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 6.1e-12 75.1 149 31.5
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 3.8e-06 55.8 45 51.1


User provided reference genes

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