Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0838900 Oryza sativa ssp. japonica HOM05D007304 ORTHO05D009233 6.2e-115 417.5 219 100.0
Zm00001eb063940 Zea mays HOM05D007304 ORTHO05D009233 9.6e-60 234.2 224 58.0
Sed0026932 Sechium edule HOM05D007304 ORTHO05D009233 9.7e-52 207.6 219 48.9
GSVIVG01034475001 Vitis vinifera HOM05D007304 ORTHO05D009233 5.3e-50 201.8 220 49.5
Manes.02G191500 Manihot esculenta HOM05D007304 ORTHO05D009233 2.0e-49 199.9 219 45.7
CSS0049262 Camellia sinensis var. sinensis HOM05D007304 ORTHO05D009233 3.4e-49 199.1 220 47.3
MELO3C008119.2 Cucumis melo HOM05D007304 ORTHO05D009233 4.5e-49 198.7 222 45.9
ClCG11G008190 Citrullus lanatus HOM05D007304 ORTHO05D009233 1.0e-48 197.6 221 46.6
Thecc.08G182300 Theobroma cacao HOM05D007304 ORTHO05D009233 1.7e-48 196.8 191 49.7
CsaV3_2G033470 Cucumis sativus L. HOM05D007304 ORTHO05D009233 2.2e-48 196.4 222 45.5
Cc10_g11390 Coffea canephora HOM05D007304 ORTHO05D009233 2.9e-48 196.1 158 55.7
Aa31LG9G14900 Aethionema arabicum HOM05D007304 ORTHO05D009233 5.0e-48 195.3 139 70.5
MSTRG.22445 Avicennia marina HOM05D007304 ORTHO05D009233 8.5e-48 194.5 221 45.7
Lj4P501T9 Lonicera japonica HOM05D007304 ORTHO05D009233 1.9e-47 193.4 158 56.3
DCAR_011537 Daucus carota HOM05D007304 ORTHO05D009233 2.5e-47 193.0 169 51.5
Potri.013G113500 Populus trichocarpa HOM05D007304 ORTHO05D009233 3.2e-47 192.6 219 45.7
QL02p033889 Quercus lobata HOM05D007304 ORTHO05D009233 3.2e-47 192.6 224 43.3
TWI32G0836 Tripterygium wilfordii HOM05D007304 ORTHO05D009233 3.2e-47 192.6 167 54.5
SalBow6G2896 Salvia bowleyana HOM05D007304 ORTHO05D009233 4.2e-47 192.2 222 45.5
Duzib177G0769 Durio zibethinus HOM05D007304 ORTHO05D009233 7.2e-47 191.4 158 55.1
MBI17_g27205_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 7.2e-47 191.4 222 47.3
Oeu039601.1 Olea europaea HOM05D007304 ORTHO05D009233 7.2e-47 191.4 219 46.6
Sopen11g009380 Solanum pennellii HOM05D007304 ORTHO05D009233 7.2e-47 191.4 223 46.6
Atru.chr13.1788 Acer truncatum HOM05D007304 ORTHO05D009233 9.4e-47 191.0 219 44.7
Atru.chr13.1792 Acer truncatum HOM05D007304 ORTHO05D009233 9.4e-47 191.0 219 44.7
COL.COLO4_22675 Corchorus olitorius HOM05D007304 ORTHO05D009233 1.2e-46 190.7 202 46.0
SGA_v2.0_scaffold149G36602 Striga asiatica HOM05D007304 ORTHO05D009233 1.2e-46 190.7 171 52.0
CiPaw.16G062000 Carya illinoinensis HOM05D007304 ORTHO05D009233 1.6e-46 190.3 220 45.5
Nn5g27732 Nelumbo nucifera HOM05D007304 ORTHO05D009233 1.6e-46 190.3 204 46.6
Ciclev10002467m.g Citrus clementina HOM05D007304 ORTHO05D009233 2.1e-46 189.9 219 45.2
PGSC0003DMG400009226 Solanum tuberosum HOM05D007304 ORTHO05D009233 2.7e-46 189.5 223 46.2
CAN.G1530.5 Capsicum annuum HOM05D007304 ORTHO05D009233 3.6e-46 189.1 219 47.5
Cfa018186 Carpinus fangiana HOM05D007304 ORTHO05D009233 3.6e-46 189.1 220 45.5
Gohir.D02G065833 Gossypium hirsutum HOM05D007304 ORTHO05D009233 4.6e-46 188.7 139 60.4
AUR62004650 Chenopodium quinoa HOM05D007304 ORTHO05D009233 6.1e-46 188.3 221 46.2
Gorai.005G074700 Gossypium raimondii HOM05D007304 ORTHO05D009233 6.1e-46 188.3 139 59.7
Migut.N03345 Erythranthe guttata HOM05D007304 ORTHO05D009233 7.9e-46 188.0 221 46.2
Thhalv10028979m.g Eutrema salsugineum HOM05D007304 ORTHO05D009233 7.9e-46 188.0 167 52.1
THA.LOC104816302 Tarenaya hassleriana HOM05D007304 ORTHO05D009233 1.0e-45 187.6 160 54.4
Lalb_Chr06g0162071 Lupinus albus HOM05D007304 ORTHO05D009233 1.8e-45 186.8 219 43.8
HPP92_003142 Vanilla planifolia HOM05D007304 ORTHO05D009233 2.3e-45 186.4 155 52.9
Gohir.A02G060400 Gossypium hirsutum HOM05D007304 ORTHO05D009233 3.0e-45 186.0 139 59.0
Psat6g187320 Pisum sativum HOM05D007304 ORTHO05D009233 3.0e-45 186.0 165 51.5
Haze_17932 Corylus avellana HOM05D007304 ORTHO05D009233 3.9e-45 185.7 167 52.1
Peaxi162Scf00310g00614 Petunia axillaris HOM05D007304 ORTHO05D009233 3.9e-45 185.7 220 45.9
Rhsim11G0060100 Rhododendron simsii HOM05D007304 ORTHO05D009233 3.9e-45 185.7 158 53.2
VMungo0720G1999 Vigna mungo HOM05D007304 ORTHO05D009233 5.1e-45 185.3 216 43.1
Nitab4.5_0000422g0040 Nicotiana tabacum HOM05D007304 ORTHO05D009233 6.7e-45 184.9 219 44.7
Aqoxy5G02599 Aquilegia oxysepala HOM05D007304 ORTHO05D009233 8.8e-45 184.5 160 53.1
RhsimUnG0069500 Rhododendron simsii HOM05D007304 ORTHO05D009233 8.8e-45 184.5 158 52.5
AL6G43210 Arabidopsis lyrata HOM05D007304 ORTHO05D009233 1.1e-44 184.1 160 52.5
CANSAT25G3778 Cannabis sativa HOM05D007304 ORTHO05D009233 1.1e-44 184.1 162 53.1
Lj5g0021067 Lotus japonicus HOM05D007304 ORTHO05D009233 1.1e-44 184.1 219 41.6
PSO063G3154 Papaver somniferum HOM05D007304 ORTHO05D009233 1.1e-44 184.1 176 50.0
BraA03t12064Z Brassica rapa HOM05D007304 ORTHO05D009233 1.5e-44 183.7 178 51.1
MD05G1041300 Malus domestica HOM05D007304 ORTHO05D009233 1.5e-44 183.7 158 53.2
Nitab4.5_0000560g0190 Nicotiana tabacum HOM05D007304 ORTHO05D009233 1.5e-44 183.7 224 46.0
TPR.G8829 Trifolium pratense HOM05D007304 ORTHO05D009233 1.5e-44 183.7 219 42.9
Carub.0006s2806 Capsella rubella HOM05D007304 ORTHO05D009233 2.0e-44 183.3 139 57.6
Medtr1g096340 Medicago truncatula HOM05D007304 ORTHO05D009233 2.0e-44 183.3 219 43.4
AUR62023569 Chenopodium quinoa HOM05D007304 ORTHO05D009233 2.6e-44 183.0 224 45.1
BcaC01g04711 Brassica carinata HOM05D007304 ORTHO05D009233 3.3e-44 182.6 168 53.0
C03p34620 Brassica napus HOM05D007304 ORTHO05D009233 3.3e-44 182.6 168 53.0
BolC3t15773H Brassica oleracea HOM05D007304 ORTHO05D009233 3.3e-44 182.6 168 53.0
SEGI_32747 Sequoiadendron giganteum HOM05D007304 ORTHO05D009233 3.3e-44 182.6 139 58.3
CARHR260470 Cardamine hirsuta HOM05D007304 ORTHO05D009233 5.7e-44 181.8 157 53.5
PSO017G3329 Papaver somniferum HOM05D007304 ORTHO05D009233 5.7e-44 181.8 176 48.9
A03p28640 Brassica napus HOM05D007304 ORTHO05D009233 7.4e-44 181.4 178 50.6
Lsat_1_v5_gn_6_109640 Lactuca sativa HOM05D007304 ORTHO05D009233 7.4e-44 181.4 195 45.1
arahy.Tifrunner.gnm1.ann1.W17VPE Arachis hypogaea HOM05D007304 ORTHO05D009233 1.3e-43 180.6 220 45.5
AT4G09620 Arabidopsis thaliana HOM05D007304 ORTHO05D009233 2.2e-43 179.9 167 50.3
arahy.Tifrunner.gnm1.ann1.E78XAF Arachis hypogaea HOM05D007304 ORTHO05D009233 2.2e-43 179.9 221 43.9
FAN13G2406 Fragaria x ananassa HOM05D007304 ORTHO05D009233 3.7e-43 179.1 174 48.9
Glyma.20G175900 Glycine max HOM05D007304 ORTHO05D009233 3.7e-43 179.1 224 42.4
Phvul.007G089900 Phaseolus vulgaris HOM05D007304 ORTHO05D009233 3.7e-43 179.1 225 43.1
EL10Ac8g20249 Beta vulgaris HOM05D007304 ORTHO05D009233 4.8e-43 178.7 220 44.1
Ca_10612_v3 Cicer arietinum L. HOM05D007304 ORTHO05D009233 6.3e-43 178.3 221 44.8
FAN04G0833 Fragaria x ananassa HOM05D007304 ORTHO05D009233 6.3e-43 178.3 219 42.5
FvH4_5g27630 Fragaria vesca HOM05D007304 ORTHO05D009233 1.1e-42 177.6 219 42.5
Sp6g07990 Schrenkiella parvula HOM05D007304 ORTHO05D009233 1.1e-42 177.6 223 42.2
Hund27084 Selenicereus undatus HOM05D007304 ORTHO05D009233 1.8e-42 176.8 186 46.8
TAR376G0332 Trochodendron aralioides HOM05D007304 ORTHO05D009233 1.8e-42 176.8 224 43.8
PGR102G2268 Punica granatum HOM05D007304 ORTHO05D009233 2.4e-42 176.4 158 53.2
RcHm_v2.0_Chr7g0219041 Rosa chinensis HOM05D007304 ORTHO05D009233 3.1e-42 176.0 162 51.9
Sabra13G0096200 Salix brachista HOM05D007304 ORTHO05D009233 3.1e-42 176.0 185 46.5
Ah.07g202740 Amaranthus hybridus HOM05D007304 ORTHO05D009233 1.5e-41 173.7 166 48.8
Sc26g0000380 Simmondsia chinensis HOM05D007304 ORTHO05D009233 2.6e-41 172.9 177 45.8
ECA246G3843 Erigeron canadensis HOM05D007304 ORTHO05D009233 3.4e-41 172.6 162 48.1
HanXRQChr05g0150521 Helianthus annuus HOM05D007304 ORTHO05D009233 7.7e-41 171.4 219 42.0
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 1.4e-37 160.6 204 41.7
Dinv41708 Davidia involucrata HOM05D007304 ORTHO05D009233 1.4e-37 160.6 207 42.5
unitig_21.g20192 Utricularia gibba HOM05D007304 ORTHO05D009233 6.7e-37 158.3 149 59.7
SMO200G0124 Selaginella moellendorffii HOM05D007304 ORTHO05D009233 2.8e-35 152.9 134 50.0
Cpa.g.sc66.48 Carica papaya HOM05D007304 ORTHO05D009233 4.1e-34 149.1 114 57.9
Mapoly0175s0009 Marchantia polymorpha HOM05D007304 ORTHO05D009233 3.5e-33 146.0 135 47.4
Eucgr.F04126 Eucalyptus grandis HOM05D007304 ORTHO05D009233 2.5e-31 139.8 146 50.0
BcaB01g02784 Brassica carinata HOM05D007304 ORTHO05D009233 4.2e-31 139.0 158 47.5
AagrBONN_evm.TU.Sc2ySwM_117.12 Anthoceros agrestis HOM05D007304 ORTHO05D009233 1.0e-29 134.4 152 39.5
Pp3c24_12240 Physcomitrium patens HOM05D007304 ORTHO05D009233 6.7e-29 131.7 142 42.3
Cre10.g445100 Chlamydomonas reinhardtii HOM05D007304 ORTHO05D009233 2.3e-21 106.7 137 33.6
Zm00001eb272990 Zea mays HOM05D007304 ORTHO05D009233 2.2e-19 100.1 102 54.9
Prupe.8G057100 Prunus persica HOM05D007304 ORTHO05D009233 3.1e-18 96.3 149 36.2
CDE02G2755 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.6e-17 94.0 79 51.9
SalBow6G1917 Salvia bowleyana HOM05D007304 ORTHO05D009233 8.5e-16 88.2 143 37.1
MCO03G180 Micromonas commoda HOM05D007304 ORTHO05D009233 1.9e-15 87.0 151 33.1
Solyc11g017430.3 Solanum lycopersicum HOM05D007304 ORTHO05D009233 2.3e-08 63.5 52 51.9
MBI11_g39361_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 7.3e-07 58.5 54 50.0


User provided reference genes

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