Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 1.9e-175 619.4 333 100.0
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 4.7e-110 402.1 336 71.4
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 5.1e-64 249.2 288 46.9
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 1.1e-58 231.5 274 44.9
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 9.3e-58 228.4 275 45.1
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 3.5e-57 226.5 272 46.3
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 2.8e-54 216.9 283 43.8
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 1.1e-53 214.9 284 42.3
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 1.4e-53 214.5 292 43.8
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 4.5e-52 209.5 295 43.7
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 5.8e-52 209.1 292 45.5
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 5.8e-52 209.1 287 39.0
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 7.6e-52 208.8 287 43.9
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 2.2e-51 207.2 274 47.1
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 3.2e-50 203.4 285 41.1
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 2.1e-49 200.7 290 42.4
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 1.3e-48 198.0 216 50.5
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 2.3e-48 197.2 286 38.8
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 2.3e-48 197.2 277 40.4
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 8.7e-48 195.3 271 42.4
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 2.2e-46 190.7 293 37.2
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 2.8e-46 190.3 284 39.4
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 8.2e-46 188.7 289 38.8
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 1.8e-45 187.6 273 39.2
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 1.8e-45 187.6 191 47.1
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 3.1e-45 186.8 288 37.8
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 9.0e-45 185.3 338 34.3
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 2.0e-44 184.1 238 45.0
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 2.6e-44 183.7 172 51.2
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 4.5e-44 183.0 289 38.4
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 4.5e-44 183.0 289 38.4
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 5.9e-44 182.6 264 41.7
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 7.6e-44 182.2 272 40.1
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 2.9e-43 180.3 283 38.9
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 2.9e-43 180.3 281 37.7
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 1.1e-42 178.3 296 38.9
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 1.9e-42 177.6 286 38.5
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 1.6e-41 174.5 188 47.3
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 1.6e-41 174.5 181 45.9
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 4.6e-41 172.9 301 38.9
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 6.1e-41 172.6 274 39.1
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 4.3e-39 166.4 281 36.3
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 9.7e-39 165.2 154 59.1
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 3.7e-38 163.3 211 41.7
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 6.3e-38 162.5 211 41.2
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 8.2e-38 162.2 305 36.7
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 3.6e-33 146.7 195 43.1
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 4.7e-33 146.4 204 41.7
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 5.7e-31 139.4 273 35.9
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 1.7e-30 137.9 191 40.8
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 3.1e-29 133.7 235 35.7
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 3.1e-29 133.7 282 35.5
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 5.3e-29 132.9 204 34.8
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 1.5e-28 131.3 229 33.2
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.5e-28 131.3 278 35.3
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 5.9e-28 129.4 200 38.5
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 1.7e-27 127.9 321 31.2
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 1.7e-27 127.9 170 38.2
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 3.2e-26 123.6 194 40.2
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 5.2e-24 116.3 255 30.6
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 4.8e-22 109.8 186 33.9
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 1.1e-21 108.6 171 33.3
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 3.1e-21 107.1 163 32.5
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 1.2e-20 105.1 167 34.1
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 2.0e-20 104.4 166 31.9
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 7.7e-20 102.4 166 31.9
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 1.7e-19 101.3 166 31.3
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 3.8e-19 100.1 163 30.1
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 5.0e-19 99.8 209 28.2
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 5.0e-19 99.8 164 30.5
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.5e-18 98.2 166 32.5
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.5e-18 98.2 163 29.4
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.5e-18 98.2 163 29.4
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 4.2e-18 96.7 164 31.1
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 5.5e-18 96.3 148 33.8
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 6.1e-17 92.8 165 30.9
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 8.0e-17 92.4 169 30.2
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 1.0e-16 92.0 165 31.5
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 1.4e-16 91.7 161 29.8
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 1.4e-16 91.7 169 30.2
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 3.0e-16 90.5 229 24.5
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 3.0e-16 90.5 169 29.6
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 3.0e-16 90.5 189 28.6
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 3.0e-16 90.5 169 29.6
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 4.0e-16 90.1 165 29.7
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 4.0e-16 90.1 166 30.7
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 4.0e-16 90.1 166 30.7
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 8.8e-16 89.0 168 31.0
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 8.8e-16 89.0 138 31.9
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 2.0e-15 87.8 163 28.2
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 2.0e-15 87.8 166 31.3
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 2.0e-15 87.8 196 29.1
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 4.4e-15 86.7 236 27.1
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 4.4e-15 86.7 165 29.1
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 4.4e-15 86.7 205 29.8
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 5.7e-15 86.3 166 30.7
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 7.5e-15 85.9 165 29.7
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 7.5e-15 85.9 200 29.0
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 1.7e-14 84.7 184 29.3
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 2.2e-14 84.3 190 26.8
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 6.3e-14 82.8 181 29.8
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 5.3e-13 79.7 83 43.4
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 5.3e-13 79.7 83 43.4
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 7.0e-13 79.3 245 28.2
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 7.0e-13 79.3 201 28.9
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 1.6e-12 78.2 113 33.6
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 4.5e-12 76.6 164 28.7
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 1.0e-11 75.5 164 29.3
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 1.0e-11 75.5 123 34.1
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 6.5e-11 72.8 147 29.9
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 8.5e-11 72.4 145 32.4
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 2.5e-10 70.9 99 34.3
CSS0002164 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 3.2e-10 70.5 79 44.3
CSS0011273 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 3.2e-10 70.5 79 44.3
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 5.5e-10 69.7 97 35.1
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 1.2e-09 68.6 164 24.4
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 1.2e-09 68.6 130 33.1
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 2.1e-09 67.8 203 24.1
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 2.7e-09 67.4 191 24.6
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 4.0e-08 63.5 50 52.0
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 4.0e-08 63.5 50 52.0
PRCOL_00006794 Prasinoderma coloniale HOM05D008124 ORTHO05D004072 4.0e-08 63.5 92 33.7
Haze_16000 Corylus avellana HOM05D013106 ORTHO05D017812 1.5e-07 61.6 161 27.3
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 2.6e-07 60.8 245 26.9
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 3.4e-07 60.5 95 32.6
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 4.4e-07 60.1 87 34.5
Nitab4.5_0003518g0030 Nicotiana tabacum HOM05D004040 ORTHO05D000309 4.4e-07 60.1 52 51.9
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 5.7e-07 59.7 37 62.2
Nitab4.5_0001839g0030 Nicotiana tabacum HOM05D004040 ORTHO05D000309 5.7e-07 59.7 51 52.9
Hund19588 Selenicereus undatus HOM05D007742 ORTHO05D004072 9.8e-07 58.9 76 28.9
SGA_v2.0_scaffold199G41207 Striga asiatica HOM05D011630 ORTHO05D014269 1.3e-06 58.5 48 45.8
Nitab4.5_0001288g0050 Nicotiana tabacum HOM05D004040 ORTHO05D000309 2.8e-06 57.4 51 51.0
Nitab4.5_0001839g0060 Nicotiana tabacum HOM05D004040 ORTHO05D000309 2.8e-06 57.4 51 54.9
Nitab4.5_0010257g0020 Nicotiana tabacum HOM05D009408 ORTHO05D000309 4.8e-06 56.6 38 63.2
Nitab4.5_0011664g0010 Nicotiana tabacum HOM05D004040 ORTHO05D000309 4.8e-06 56.6 51 51.0
Nitab4.5_0029094g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 4.8e-06 56.6 51 51.0
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 8.3e-06 55.8 69 37.7
Hma1.2p1_0048F.1_g028060 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 8.3e-06 55.8 42 59.5


User provided reference genes

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