Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0744675 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D004153 0.0e+00 1986.8 1059 100.0
Zm00001eb056940 Zea mays HOM05D000921 ORTHO05D004153 0.0e+00 1615.9 1057 83.2
TAR633G0413 Trochodendron aralioides HOM05D000921 ORTHO05D004153 0.0e+00 1246.5 995 67.7
Nn6g33594 Nelumbo nucifera HOM05D000921 ORTHO05D004153 0.0e+00 1238.8 1031 64.9
FvH4_2g22920 Fragaria vesca HOM05D000921 ORTHO05D004153 0.0e+00 1224.2 991 67.0
Atru.chr5.1523 Acer truncatum HOM05D000921 ORTHO05D004153 0.0e+00 1221.8 998 66.3
Prupe.8G234500 Prunus persica HOM05D000921 ORTHO05D004153 0.0e+00 1220.3 995 65.9
RcHm_v2.0_Chr6g0289881 Rosa chinensis HOM05D000921 ORTHO05D004153 0.0e+00 1219.9 994 66.2
FAN15G1223 Fragaria x ananassa HOM05D000921 ORTHO05D004153 0.0e+00 1219.1 995 66.4
FAN24G0847 Fragaria x ananassa HOM05D000921 ORTHO05D004153 0.0e+00 1219.1 991 66.9
COL.COLO4_09186 Corchorus olitorius HOM05D000921 ORTHO05D004153 0.0e+00 1218.8 990 66.0
MD03G1257800 Malus domestica HOM05D000921 ORTHO05D004153 0.0e+00 1217.6 993 65.8
FAN20G3205 Fragaria x ananassa HOM05D000921 ORTHO05D004153 0.0e+00 1216.8 995 66.2
MD11G1278500 Malus domestica HOM05D000921 ORTHO05D004153 0.0e+00 1214.5 993 65.5
FAN27G1722 Fragaria x ananassa HOM05D000921 ORTHO05D004153 0.0e+00 1213.4 995 66.0
Cfa006203 Carpinus fangiana HOM05D000921 ORTHO05D004153 0.0e+00 1211.1 993 65.4
Aqoxy5G00390 Aquilegia oxysepala HOM05D000921 ORTHO05D004153 0.0e+00 1209.9 999 65.6
Thecc.01G271200 Theobroma cacao HOM05D000921 ORTHO05D004153 0.0e+00 1209.9 995 65.3
Cc01_g18990 Coffea canephora HOM05D000921 ORTHO05D004153 0.0e+00 1203.0 1000 64.7
Potri.002G047700 Populus trichocarpa HOM05D000921 ORTHO05D004153 0.0e+00 1203.0 996 66.1
Duzib138G1896 Durio zibethinus HOM05D000921 ORTHO05D004153 0.0e+00 1202.6 996 65.6
Actinidia19962 Actinidia chinensis HOM05D000921 ORTHO05D004153 0.0e+00 1202.2 995 64.8
CANSAT25G1208 Cannabis sativa HOM05D000921 ORTHO05D004153 0.0e+00 1198.7 1002 64.5
Potri.005G215400 Populus trichocarpa HOM05D000921 ORTHO05D004153 0.0e+00 1198.3 999 65.9
vmacro02613 Vaccinium macrocarpon HOM05D000921 ORTHO05D004153 0.0e+00 1198.3 995 65.2
PSO210G1924 Papaver somniferum HOM05D000921 ORTHO05D004153 0.0e+00 1197.6 995 64.8
Dinv32883 Davidia involucrata HOM05D000921 ORTHO05D004153 0.0e+00 1197.2 989 65.4
QL12p042334 Quercus lobata HOM05D000921 ORTHO05D004153 0.0e+00 1193.7 1000 64.5
Manes.01G203800 Manihot esculenta HOM05D000921 ORTHO05D004153 0.0e+00 1193.3 999 64.7
Eucgr.K03323 Eucalyptus grandis HOM05D000921 ORTHO05D004153 0.0e+00 1192.6 995 63.9
Nn1g00513 Nelumbo nucifera HOM05D000921 ORTHO05D004153 0.0e+00 1192.2 998 64.3
TWI18G0154 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 0.0e+00 1189.9 992 64.4
Sabra05G0164600 Salix brachista HOM05D000921 ORTHO05D004153 0.0e+00 1188.7 1000 65.6
Sabra02G0038900 Salix brachista HOM05D000921 ORTHO05D004153 0.0e+00 1187.6 1042 63.2
CiPaw.07G086700 Carya illinoinensis HOM05D000921 ORTHO05D004153 0.0e+00 1186.0 1001 64.1
TWI12G1077 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 0.0e+00 1184.1 993 65.2
Thhalv10006519m.g Eutrema salsugineum HOM05D000921 ORTHO05D004153 0.0e+00 1182.5 995 63.5
Peaxi162Scf00259g00414 Petunia axillaris HOM05D000921 ORTHO05D004153 0.0e+00 1182.5 1010 63.3
Sp1g02060 Schrenkiella parvula HOM05D000921 ORTHO05D004153 0.0e+00 1182.2 993 63.7
Rhsim13G0028700 Rhododendron simsii HOM05D000921 ORTHO05D004153 0.0e+00 1177.9 998 63.7
CSS0032745 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 0.0e+00 1174.8 995 64.2
AL1G12520 Arabidopsis lyrata HOM05D000921 ORTHO05D004153 0.0e+00 1172.1 994 63.0
Gohir.D11G131000 Gossypium hirsutum HOM05D000921 ORTHO05D004153 0.0e+00 1171.4 995 63.7
CSS0010203 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 0.0e+00 1171.0 989 64.4
Duzib133G0456 Durio zibethinus HOM05D000921 ORTHO05D004153 0.0e+00 1171.0 993 63.9
THA.LOC104825985 Tarenaya hassleriana HOM05D000921 ORTHO05D004153 0.0e+00 1171.0 992 63.5
AT1G03060 Arabidopsis thaliana HOM05D000921 ORTHO05D004153 0.0e+00 1170.2 986 63.2
CSS0042369 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 0.0e+00 1169.8 989 64.3
CAN.G1072.6 Capsicum annuum HOM05D000921 ORTHO05D004153 0.0e+00 1169.5 994 63.6
Carub.0001s0220 Capsella rubella HOM05D000921 ORTHO05D004153 0.0e+00 1167.5 992 62.6
Sopen09g027450 Solanum pennellii HOM05D000921 ORTHO05D004153 0.0e+00 1167.5 992 63.1
PGR044G0864 Punica granatum HOM05D000921 ORTHO05D004153 0.0e+00 1167.1 994 63.2
Solyc09g065700.3 Solanum lycopersicum HOM05D000921 ORTHO05D004153 0.0e+00 1167.1 992 63.1
Gorai.007G140000 Gossypium raimondii HOM05D000921 ORTHO05D004153 0.0e+00 1164.8 1000 63.1
Gorai.004G056400 Gossypium raimondii HOM05D000921 ORTHO05D004153 0.0e+00 1164.4 999 63.6
ATR0665G073 Amborella trichopoda HOM05D000921 ORTHO05D004153 0.0e+00 1163.7 1000 63.2
Phvul.007G175300 Phaseolus vulgaris HOM05D000921 ORTHO05D004153 0.0e+00 1162.5 991 63.6
BraA10t42445Z Brassica rapa HOM05D000921 ORTHO05D004153 0.0e+00 1161.7 995 62.9
A10p01690 Brassica napus HOM05D000921 ORTHO05D004153 0.0e+00 1161.4 992 62.8
Lj2C1164G7 Lonicera japonica HOM05D000921 ORTHO05D004153 0.0e+00 1160.6 997 63.6
CARHR002410 Cardamine hirsuta HOM05D000921 ORTHO05D004153 0.0e+00 1159.1 994 62.5
ClCG09G007420 Citrullus lanatus HOM05D000921 ORTHO05D004153 0.0e+00 1159.1 991 63.6
Glyma.02G144200 Glycine max HOM05D000921 ORTHO05D004153 0.0e+00 1158.7 993 63.5
Lsat_1_v5_gn_5_185441 Lactuca sativa HOM05D000921 ORTHO05D004153 0.0e+00 1158.7 981 63.1
MELO3C015783.2 Cucumis melo HOM05D000921 ORTHO05D004153 0.0e+00 1158.3 999 62.9
C05p01680 Brassica napus HOM05D000921 ORTHO05D004153 0.0e+00 1156.7 997 62.3
BolC5t28947H Brassica oleracea HOM05D000921 ORTHO05D004153 0.0e+00 1156.7 997 62.3
CsaV3_7G027700 Cucumis sativus L. HOM05D000921 ORTHO05D004153 0.0e+00 1156.0 999 63.0
Nitab4.5_0003424g0020 Nicotiana tabacum HOM05D000921 ORTHO05D004153 0.0e+00 1155.2 993 63.2
EL10Ac5g10491 Beta vulgaris HOM05D000921 ORTHO05D004153 0.0e+00 1154.8 989 63.8
A09p68370 Brassica napus HOM05D000921 ORTHO05D004153 0.0e+00 1154.8 995 62.0
Nitab4.5_0000459g0090 Nicotiana tabacum HOM05D000921 ORTHO05D004153 0.0e+00 1154.8 1040 61.1
BraA09t42173Z Brassica rapa HOM05D000921 ORTHO05D004153 0.0e+00 1154.4 995 61.9
Medtr1g071260 Medicago truncatula HOM05D000921 ORTHO05D004153 0.0e+00 1153.3 990 63.1
Glyma.10G030000 Glycine max HOM05D000921 ORTHO05D004153 0.0e+00 1152.1 1002 62.4
BolC8t52810H Brassica oleracea HOM05D000921 ORTHO05D004153 0.0e+00 1151.0 995 62.1
Sed0015319 Sechium edule HOM05D000921 ORTHO05D004153 0.0e+00 1149.0 1002 63.0
C08p52940 Brassica napus HOM05D000921 ORTHO05D004153 0.0e+00 1147.5 997 61.9
Aa31LG1G9470 Aethionema arabicum HOM05D000921 ORTHO05D004153 0.0e+00 1146.0 993 63.7
HanXRQChr01g0005671 Helianthus annuus HOM05D000921 ORTHO05D004153 0.0e+00 1145.6 982 63.4
Migut.D00355 Erythranthe guttata HOM05D000921 ORTHO05D004153 0.0e+00 1144.8 997 61.9
AUR62032282 Chenopodium quinoa HOM05D000921 ORTHO05D004153 0.0e+00 1144.4 989 62.7
TPR.G34892 Trifolium pratense HOM05D000921 ORTHO05D004153 0.0e+00 1144.0 998 62.3
Ca_09726_v3 Cicer arietinum L. HOM05D000921 ORTHO05D004153 0.0e+00 1140.9 1001 62.3
arahy.Tifrunner.gnm1.ann1.0T0464 Arachis hypogaea HOM05D000921 ORTHO05D004153 0.0e+00 1139.8 991 62.4
Lj5g0027434 Lotus japonicus HOM05D000921 ORTHO05D004153 0.0e+00 1139.8 990 62.0
Psat6g058840 Pisum sativum HOM05D000921 ORTHO05D004153 0.0e+00 1137.9 1005 61.9
Lalb_Chr06g0162771 Lupinus albus HOM05D000921 ORTHO05D004153 0.0e+00 1127.9 1004 61.2
ECA248G3113 Erigeron canadensis HOM05D000921 ORTHO05D004153 0.0e+00 1125.9 981 62.6
Gorai.004G217600 Gossypium raimondii HOM05D000921 ORTHO05D004153 0.0e+00 1124.0 994 62.5
Sc05g0001320 Simmondsia chinensis HOM05D000921 ORTHO05D004153 0.0e+00 1123.2 996 61.4
Gohir.A11G125600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 0.0e+00 1122.8 1000 62.0
Hund02865 Selenicereus undatus HOM05D000921 ORTHO05D004153 0.0e+00 1121.7 997 60.9
Ciclev10018426m.g Citrus clementina HOM05D000921 ORTHO05D004153 0.0e+00 1116.3 940 65.2
Gohir.D08G205600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 0.0e+00 1115.9 994 62.0
SGA_v2.0_scaffold1G00535 Striga asiatica HOM05D000921 ORTHO05D004153 0.0e+00 1110.1 993 61.0
HanXRQChr06g0177821 Helianthus annuus HOM05D000921 ORTHO05D004153 0.0e+00 1094.7 981 60.7
GSVIVG01003123001 Vitis vinifera HOM05D000921 ORTHO05D004153 0.0e+00 1090.1 982 61.1
MSTRG.21525 Avicennia marina HOM05D000921 ORTHO05D004153 0.0e+00 1089.7 1026 58.7
Haze_04641 Corylus avellana HOM05D000921 ORTHO05D004153 0.0e+00 1088.9 944 63.1
AL6G50380 Arabidopsis lyrata HOM05D000921 ORTHO05D004153 6.5e-311 1070.8 1003 59.1
Lsat_1_v5_gn_8_93941 Lactuca sativa HOM05D000921 ORTHO05D004153 1.0e-308 1063.5 1011 57.6
BcaC07g42269 Brassica carinata HOM05D000921 ORTHO05D004153 1.3e-308 1063.1 1012 59.1
Lalb_Chr01g0019981 Lupinus albus HOM05D000921 ORTHO05D004153 6.7e-308 1060.8 999 58.4
SalBow4G3326 Salvia bowleyana HOM05D000921 ORTHO05D004153 1.3e-306 1056.6 995 59.0
DCAR_002700 Daucus carota HOM05D000921 ORTHO05D004153 4.8e-306 1054.7 939 61.7
arahy.Tifrunner.gnm1.ann1.IAH9UB Arachis hypogaea HOM05D000921 ORTHO05D004153 8.2e-306 1053.9 984 58.0
arahy.Tifrunner.gnm1.ann1.EGZY1N Arachis hypogaea HOM05D000921 ORTHO05D004153 1.4e-305 1053.1 984 58.0
AT4G02660 Arabidopsis thaliana HOM05D000921 ORTHO05D004153 2.0e-304 1049.3 1009 58.0
BcaB03g15744 Brassica carinata HOM05D000921 ORTHO05D004153 5.9e-304 1047.7 984 58.5
Sp6g02580 Schrenkiella parvula HOM05D000921 ORTHO05D004153 3.2e-302 1042.0 989 57.9
CARHR250960 Cardamine hirsuta HOM05D000921 ORTHO05D004153 5.5e-302 1041.2 1045 56.9
Carub.0006s3446 Capsella rubella HOM05D000921 ORTHO05D004153 2.7e-301 1038.9 1022 56.7
HanXRQChr04g0113931 Helianthus annuus HOM05D000921 ORTHO05D004153 3.6e-301 1038.5 966 59.6
BcaB01g02482 Brassica carinata HOM05D000921 ORTHO05D004153 1.5e-299 1033.1 992 57.9
CDE04G0357 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 3.3e-299 1031.9 943 60.7
BcaC01g06740 Brassica carinata HOM05D000921 ORTHO05D004153 1.4e-297 1026.5 993 57.5
Dinv22500 Davidia involucrata HOM05D000921 ORTHO05D004153 9.1e-297 1023.8 995 58.4
PSO461G0055 Papaver somniferum HOM05D000921 ORTHO05D004153 3.9e-292 1008.4 992 56.5
SHI10018 Sapria himalayana HOM05D000921 ORTHO05D004153 1.5e-291 1006.5 1008 56.3
Hund09551 Selenicereus undatus HOM05D000921 ORTHO05D004153 9.7e-291 1003.8 925 61.2
Ah.11g050210 Amaranthus hybridus HOM05D000921 ORTHO05D004153 1.8e-289 999.6 968 58.4
Cpa.g.sc52.120 Carica papaya HOM05D000921 ORTHO05D004153 3.1e-289 998.8 997 56.9
ECA236G3737 Erigeron canadensis HOM05D000921 ORTHO05D004153 3.6e-285 985.3 979 56.9
AUR62011970 Chenopodium quinoa HOM05D000921 ORTHO05D004153 2.1e-277 959.5 962 57.0
CDE10G0697 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 3.0e-260 902.5 963 52.2
Sc17g0001160 Simmondsia chinensis HOM05D000921 ORTHO05D004153 6.0e-248 861.7 700 65.0
SEGI_18450 Sequoiadendron giganteum HOM05D000921 ORTHO05D004153 4.0e-244 849.0 824 57.8
HPP92_021305 Vanilla planifolia HOM05D000921 ORTHO05D004153 1.9e-241 840.1 884 55.2
Lj1C56G7 Lonicera japonica HOM05D000921 ORTHO05D004153 6.6e-223 778.5 692 61.7
Actinidia09105 Actinidia chinensis HOM05D000921 ORTHO05D004153 7.1e-217 758.4 690 60.7
Mapoly0082s0083 Marchantia polymorpha HOM05D000921 ORTHO05D004153 2.2e-194 683.7 1080 40.6
Pp3c6_26100 Physcomitrium patens HOM05D000921 ORTHO05D004153 1.2e-171 608.2 1130 37.3
Hma1.2p1_0760F.1_g214090 Hydrangea macrophylla HOM05D000921 ORTHO05D004153 1.2e-168 598.2 499 64.7
SMO236G0048 Selaginella moellendorffii HOM05D000921 ORTHO05D004153 6.1e-168 595.9 980 38.5
Pp3c5_2890 Physcomitrium patens HOM05D000921 ORTHO05D004153 9.7e-166 588.6 1126 36.1
Pp3c5_2897 Physcomitrium patens HOM05D000921 ORTHO05D004153 9.7e-166 588.6 1126 36.1
Pp3c6_5700 Physcomitrium patens HOM05D000921 ORTHO05D004153 1.3e-165 588.2 1007 37.5
Pp3c6_5706 Physcomitrium patens HOM05D000921 ORTHO05D004153 1.3e-165 588.2 1007 37.5
AagrBONN_evm.TU.Sc2ySwM_117.1900 Anthoceros agrestis HOM05D000921 ORTHO05D004153 5.5e-161 572.8 899 41.4
Pp3c16_11700 Physcomitrium patens HOM05D000921 ORTHO05D004153 4.1e-156 556.6 1028 36.5
Pp3c16_11705 Physcomitrium patens HOM05D000921 ORTHO05D004153 4.1e-156 556.6 1028 36.5
arahy.Tifrunner.gnm1.ann1.BY50EL Arachis hypogaea HOM05D000921 ORTHO05D004153 1.3e-154 551.6 499 60.3
unitig_61.g26265 Utricularia gibba HOM05D000921 ORTHO05D004153 3.8e-154 550.1 997 36.4
Gohir.D08G055580 Gossypium hirsutum HOM05D000921 ORTHO05D004153 3.1e-143 513.8 426 64.8
Oeu002265.1 Olea europaea HOM05D000921 ORTHO05D004153 2.3e-122 444.5 561 47.6
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 6.7e-98 363.2 925 31.2
VMungo0720G2500 Vigna mungo HOM05D000921 ORTHO05D015533 3.0e-90 337.8 273 64.1
CAN.G1355.10 Capsicum annuum HOM05D000921 ORTHO05D004153 3.9e-82 310.8 361 53.7
Lj1C56G6 Lonicera japonica HOM05D000921 ORTHO05D004153 5.7e-81 307.0 301 57.1
Oeu038250.1 Olea europaea HOM05D000921 ORTHO05D015037 4.5e-78 297.4 236 65.3
Sc17g0001150 Simmondsia chinensis HOM05D000921 ORTHO05D015037 5.5e-76 290.4 246 63.4
Gohir.D03G068300 Gossypium hirsutum HOM05D000921 ORTHO05D015037 3.8e-53 214.5 159 67.9
Gorai.003G092300 Gossypium raimondii HOM05D000921 ORTHO05D015037 7.2e-52 210.3 158 67.1
Gorai.004G093100 Gossypium raimondii HOM05D000921 ORTHO05D015037 8.3e-48 196.8 148 66.2
Psat7g116160 Pisum sativum HOM05D002786 ORTHO05D015037 1.1e-44 186.4 149 64.4
CAN.G1355.7 Capsicum annuum HOM05D000921 ORTHO05D015037 4.2e-44 184.5 156 59.0
Psat0s5953g0080 Pisum sativum HOM05D001390 ORTHO05D015037 5.2e-42 177.6 136 66.9
Gohir.D07G116900 Gossypium hirsutum HOM05D000921 ORTHO05D015037 2.4e-39 168.7 130 66.9
Gohir.D02G156000 Gossypium hirsutum HOM05D000921 ORTHO05D015037 1.6e-38 166.0 130 64.6
Lsat_1_v5_gn_1_120240 Lactuca sativa HOM05D000921 ORTHO05D036458 2.3e-37 162.2 168 54.2
SEGI_07899 Sequoiadendron giganteum HOM05D000921 ORTHO05D015533 2.9e-37 161.8 167 52.1
C03p37690 Brassica napus HOM05D000921 ORTHO05D015533 7.5e-33 147.1 120 63.3
BolC3t16058H Brassica oleracea HOM05D000921 ORTHO05D015533 7.5e-33 147.1 120 63.3
BraA03t12270Z Brassica rapa HOM05D000921 ORTHO05D015533 3.7e-32 144.8 120 61.7
A03p30910 Brassica napus HOM05D000921 ORTHO05D015533 6.3e-32 144.1 120 61.7
Lsat_1_v5_gn_1_73041 Lactuca sativa HOM05D002056 ORTHO05D036458 1.8e-31 142.5 156 53.2
Gohir.D08G055600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 4.9e-24 117.9 132 53.8
HanXRQChr02g0052171 Helianthus annuus HOM05D000921 ORTHO05D015533 8.3e-24 117.1 169 40.8
Lsat_1_v5_gn_4_20061 Lactuca sativa HOM05D000548 ORTHO05D015037 9.5e-20 103.6 77 70.1
Lsat_1_v5_gn_1_120080 Lactuca sativa HOM05D001785 ORTHO05D001933 2.4e-15 89.0 123 48.0
Gohir.A08G045250 Gossypium hirsutum HOM05D000921 ORTHO05D015533 1.6e-14 86.3 54 75.9
FvH4_1g23851 Fragaria vesca HOM05D000921 ORTHO05D045821 2.7e-14 85.5 45 91.1
Gohir.D08G055560 Gossypium hirsutum HOM05D000921 ORTHO05D015533 6.0e-14 84.3 54 74.1
FvH4_3g33661 Fragaria vesca HOM05D000921 ORTHO05D198257 1.4e-10 73.2 44 77.3
Gorai.012G075400 Gossypium raimondii HOM05D000921 ORTHO05D015533 8.9e-10 70.5 40 82.5
Glyma.10G030300 Glycine max HOM05D000921 ORTHO05D015037 2.0e-09 69.3 72 48.6
MD11G1312300 Malus domestica HOM05D000921 ORTHO05D045821 1.7e-08 66.2 43 69.8
VMungo1309G1394 Vigna mungo HOM05D001853 ORTHO05D015533 1.7e-08 66.2 51 60.8


User provided reference genes

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