Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0685100 Oryza sativa ssp. japonica HOM05D007191 ORTHO05D009370 1.4e-190 669.5 341 100.0
Zm00001eb053350 Zea mays HOM05D007191 ORTHO05D009370 1.3e-116 423.7 314 70.7
Aqoxy6G01485 Aquilegia oxysepala HOM05D007191 ORTHO05D009370 8.5e-87 324.7 286 57.7
PSO675G0552 Papaver somniferum HOM05D007191 ORTHO05D009370 5.1e-84 315.5 286 55.9
Ca_22623_v3 Cicer arietinum L. HOM05D007191 ORTHO05D009370 2.5e-83 313.2 288 57.3
CsaV3_3G006990 Cucumis sativus L. HOM05D007191 ORTHO05D009370 3.3e-83 312.8 309 52.4
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 4.3e-83 312.4 286 57.3
Medtr8g068220 Medicago truncatula HOM05D007191 ORTHO05D009370 4.8e-82 308.9 312 52.9
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 8.2e-82 308.1 284 55.6
MELO3C014951.2 Cucumis melo HOM05D007191 ORTHO05D009370 8.2e-82 308.1 300 54.3
Sp7g35660 Schrenkiella parvula HOM05D007191 ORTHO05D009370 1.1e-81 307.8 283 56.5
CARHR246430 Cardamine hirsuta HOM05D007191 ORTHO05D009370 1.4e-81 307.4 284 56.3
PSO541G2681 Papaver somniferum HOM05D007191 ORTHO05D009370 1.4e-81 307.4 286 54.9
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 1.8e-81 307.0 287 57.5
CSS0046556 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 5.3e-81 305.4 289 56.7
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 5.3e-81 305.4 287 56.4
FvH4_1g19321 Fragaria vesca HOM05D007191 ORTHO05D009370 2.0e-80 303.5 287 56.1
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 2.6e-80 303.1 298 55.0
Lj4g0026970 Lotus japonicus HOM05D007191 ORTHO05D009370 2.6e-80 303.1 286 55.9
BcaNung05371 Brassica carinata HOM05D007191 ORTHO05D009370 3.4e-80 302.8 282 55.7
ClCG10G008240 Citrullus lanatus HOM05D007191 ORTHO05D009370 5.9e-80 302.0 328 51.8
AL7G12620 Arabidopsis lyrata HOM05D007191 ORTHO05D009370 7.7e-80 301.6 283 55.8
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 1.3e-79 300.8 289 56.4
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 1.3e-79 300.8 336 50.6
A01p01070 Brassica napus HOM05D007191 ORTHO05D009370 1.7e-79 300.4 284 55.6
BraA01t00105Z Brassica rapa HOM05D007191 ORTHO05D009370 1.7e-79 300.4 284 55.6
Carub.0007s0220 Capsella rubella HOM05D007191 ORTHO05D009370 1.7e-79 300.4 282 55.3
BolC1t00117H Brassica oleracea HOM05D007191 ORTHO05D009370 2.2e-79 300.1 285 55.1
Thhalv10025567m.g Eutrema salsugineum HOM05D007191 ORTHO05D009370 2.2e-79 300.1 282 55.0
TPR.G29816 Trifolium pratense HOM05D007191 ORTHO05D009370 2.2e-79 300.1 323 50.5
arahy.Tifrunner.gnm1.ann1.DV4H7C Arachis hypogaea HOM05D007191 ORTHO05D009370 2.9e-79 299.7 282 57.1
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 2.9e-79 299.7 337 51.0
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 2.9e-79 299.7 284 55.6
Cpa.g.sc55.6 Carica papaya HOM05D007191 ORTHO05D009370 3.8e-79 299.3 283 57.2
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 3.8e-79 299.3 282 56.0
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 3.8e-79 299.3 284 54.6
C01p01190 Brassica napus HOM05D007191 ORTHO05D009370 8.5e-79 298.1 283 55.1
Dinv13563 Davidia involucrata HOM05D007191 ORTHO05D009370 8.5e-79 298.1 282 56.7
CANSAT01G2982 Cannabis sativa HOM05D007191 ORTHO05D009370 1.1e-78 297.7 284 53.9
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 1.1e-78 297.7 285 55.4
AT4G38020 Arabidopsis thaliana HOM05D007191 ORTHO05D009370 1.9e-78 297.0 281 54.4
BcaNung00953 Brassica carinata HOM05D007191 ORTHO05D009370 2.5e-78 296.6 282 54.6
AUR62003688 Chenopodium quinoa HOM05D007191 ORTHO05D009370 2.5e-78 296.6 292 54.5
Duzib147G1243 Durio zibethinus HOM05D007191 ORTHO05D009370 2.5e-78 296.6 283 55.8
Glyma.08G276900 Glycine max HOM05D007191 ORTHO05D009370 3.2e-78 296.2 288 54.5
Psat4g117600 Pisum sativum HOM05D007191 ORTHO05D009370 4.2e-78 295.8 294 52.0
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 5.5e-78 295.4 290 55.2
FAN19G0835 Fragaria x ananassa HOM05D007191 ORTHO05D000122 5.5e-78 295.4 278 56.8
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 7.2e-78 295.0 281 54.8
FAN19G2137 Fragaria x ananassa HOM05D007191 ORTHO05D000122 7.2e-78 295.0 278 56.5
Gorai.007G232000 Gossypium raimondii HOM05D007191 ORTHO05D009370 7.2e-78 295.0 283 56.2
Lalb_Chr16g0392111 Lupinus albus HOM05D007191 ORTHO05D009370 9.4e-78 294.7 286 54.2
Gohir.A11G207400 Gossypium hirsutum HOM05D007191 ORTHO05D009370 1.2e-77 294.3 283 55.8
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 1.6e-77 293.9 286 54.5
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 2.7e-77 293.1 282 56.0
HanXRQChr09g0259541 Helianthus annuus HOM05D007191 ORTHO05D009370 2.7e-77 293.1 306 52.6
Gohir.D11G215700 Gossypium hirsutum HOM05D007191 ORTHO05D009370 3.6e-77 292.7 283 55.8
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 3.6e-77 292.7 288 55.2
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 6.1e-77 292.0 286 54.5
TWI74G0882 Tripterygium wilfordii HOM05D007191 ORTHO05D009370 7.9e-77 291.6 312 51.6
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 1.8e-76 290.4 307 49.5
vmacro13023 Vaccinium macrocarpon HOM05D007191 ORTHO05D009370 2.3e-76 290.0 304 53.3
Migut.H02278 Erythranthe guttata HOM05D007191 ORTHO05D009370 3.0e-76 289.7 297 52.2
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 5.1e-76 288.9 284 54.2
AUR62018000 Chenopodium quinoa HOM05D007191 ORTHO05D009370 1.1e-75 287.7 292 52.4
Manes.13G101800 Manihot esculenta HOM05D007191 ORTHO05D009370 3.3e-75 286.2 347 47.3
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 4.4e-75 285.8 285 55.1
Manes.13G092280 Manihot esculenta HOM05D007191 ORTHO05D009370 1.7e-74 283.9 347 47.3
Ah.03g143260 Amaranthus hybridus HOM05D007191 ORTHO05D009370 2.8e-74 283.1 290 53.8
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 1.4e-73 280.8 334 47.3
HPP92_014152 Vanilla planifolia HOM05D007191 ORTHO05D009370 1.4e-73 280.8 272 54.0
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 4.1e-73 279.3 289 51.2
THA.LOC104804178 Tarenaya hassleriana HOM05D007191 ORTHO05D009370 4.1e-73 279.3 283 52.3
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 9.1e-73 278.1 287 52.6
Oeu017115.1 Olea europaea HOM05D007191 ORTHO05D009370 5.9e-72 275.4 387 42.4
HPP92_014172 Vanilla planifolia HOM05D007191 ORTHO05D009370 3.8e-71 272.7 286 51.4
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 5.0e-71 272.3 294 52.4
Haze_03901 Corylus avellana HOM05D007191 ORTHO05D009370 1.4e-70 270.8 354 45.8
SalBow3G4077 Salvia bowleyana HOM05D007191 ORTHO05D009370 2.5e-70 270.0 301 50.5
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 1.2e-69 267.7 289 51.9
Sed0016887 Sechium edule HOM05D007191 ORTHO05D009370 2.1e-69 266.9 287 50.9
Nitab4.5_0005446g0010 Nicotiana tabacum HOM05D007191 ORTHO05D009370 2.7e-69 266.5 282 53.2
arahy.Tifrunner.gnm1.ann1.6T17AW Arachis hypogaea HOM05D007191 ORTHO05D009370 7.9e-69 265.0 282 52.5
Nn5g29827 Nelumbo nucifera HOM05D007191 ORTHO05D009370 8.8e-68 261.5 285 50.2
Cfa006863 Carpinus fangiana HOM05D007191 ORTHO05D000122 6.3e-66 255.4 322 46.9
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 3.1e-65 253.1 251 54.2
DCAR_003441 Daucus carota HOM05D007191 ORTHO05D003232 2.0e-64 250.4 243 54.3
Sc03g0000490 Simmondsia chinensis HOM05D007191 ORTHO05D009370 5.9e-64 248.8 278 49.3
SMO364G0498 Selaginella moellendorffii HOM05D007191 ORTHO05D009370 2.9e-63 246.5 308 41.6
SGA_v2.0_scaffold108G30936 Striga asiatica HOM05D007191 ORTHO05D009370 4.2e-62 242.7 270 48.5
Pp3c5_6200 Physcomitrium patens HOM05D007191 ORTHO05D009370 5.5e-62 242.3 292 42.5
unitig_27.g25347 Utricularia gibba HOM05D007191 ORTHO05D009370 9.7e-59 231.5 336 41.4
ECA232G3284 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.3e-58 228.8 229 52.4
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 8.2e-58 228.4 203 56.7
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 1.6e-56 224.2 290 42.1
Mapoly0036s0111 Marchantia polymorpha HOM05D007191 ORTHO05D009370 6.5e-55 218.8 318 41.5
Lj2A526T20 Lonicera japonica HOM05D007191 ORTHO05D009370 1.1e-54 218.0 291 44.7
AUR62043608 Chenopodium quinoa HOM05D007191 ORTHO05D009370 2.5e-46 190.3 156 59.6
Pp3c5_6210 Physcomitrium patens HOM05D007191 ORTHO05D009370 4.7e-45 186.0 264 37.9
MCO07G132 Micromonas commoda HOM05D007191 ORTHO05D009370 1.4e-44 184.5 306 36.9
Cre17.g744947 Chlamydomonas reinhardtii HOM05D007191 ORTHO05D009370 2.7e-40 170.2 360 35.6
AUR62014153 Chenopodium quinoa HOM05D007191 ORTHO05D002709 4.5e-40 169.5 137 59.9
PRCOL_00003319 Prasinoderma coloniale HOM05D007191 ORTHO05D009370 6.4e-34 149.1 300 36.3
Cc00_g34880 Coffea canephora HOM05D007191 ORTHO05D009370 2.5e-30 137.1 153 48.4
PGR102G1719 Punica granatum HOM05D007191 ORTHO05D009370 2.5e-30 137.1 155 47.7
SEGI_38116 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 3.4e-27 126.7 205 40.5
SEGI_29034 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 9.9e-19 98.6 135 40.0
Cc07_g13870 Coffea canephora HOM05D007191 ORTHO05D003232 3.7e-18 96.7 67 67.2
RcHm_v2.0_Chr6g0269301 Rosa chinensis HOM05D007191 ORTHO05D009370 2.6e-11 73.9 99 41.4
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 3.4e-11 73.6 151 33.8
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 6.6e-07 59.3 188 33.0
Cc07_g13860 Coffea canephora HOM05D007191 ORTHO05D009370 2.5e-06 57.4 70 44.3


User provided reference genes

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