Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.8e-188 661.4 337 100.0
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 1.8e-153 546.2 333 82.6
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.0e-136 489.6 319 77.1
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 2.2e-127 459.5 339 69.9
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 1.6e-122 443.4 337 68.8
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 6.4e-111 404.8 339 63.1
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 8.3e-111 404.4 341 62.2
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 2.4e-110 402.9 338 62.7
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.3e-108 396.4 342 60.2
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.1e-107 394.0 345 59.7
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 3.3e-107 392.5 334 63.5
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.6e-106 390.2 326 63.5
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 8.0e-106 387.9 337 60.5
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 1.8e-105 386.7 337 61.1
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 3.1e-105 386.0 334 62.3
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 6.8e-105 384.8 328 64.0
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 1.2e-104 384.0 338 62.7
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 2.6e-104 382.9 338 61.8
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.6e-104 382.9 337 61.7
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 2.6e-104 382.9 337 61.4
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.4e-104 382.5 337 60.8
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.4e-104 382.5 339 61.4
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 3.4e-104 382.5 334 62.3
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 4.4e-104 382.1 337 61.1
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 4.4e-104 382.1 338 58.9
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 5.8e-104 381.7 336 61.3
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 7.5e-104 381.3 338 60.4
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 9.8e-104 380.9 343 59.8
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 4.9e-103 378.6 338 58.6
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 6.4e-103 378.3 340 60.6
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 6.4e-103 378.3 338 62.1
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.1e-102 377.5 336 58.9
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 1.1e-102 377.5 337 62.9
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.4e-102 377.1 330 61.8
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 3.2e-102 375.9 334 60.2
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 9.2e-102 374.4 333 58.9
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 9.2e-102 374.4 339 60.5
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.7e-101 372.9 334 58.1
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 3.5e-101 372.5 335 60.3
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 1.0e-100 370.9 338 56.5
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 1.7e-100 370.2 323 63.2
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 1.7e-100 370.2 334 58.7
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.7e-100 370.2 338 60.1
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 2.3e-100 369.8 332 60.2
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 2.3e-100 369.8 337 60.2
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 3.0e-100 369.4 329 59.3
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 6.6e-100 368.2 336 57.1
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 6.6e-100 368.2 334 58.4
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 8.6e-100 367.9 338 60.4
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 1.5e-99 367.1 322 61.8
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 3.3e-99 365.9 318 63.2
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 4.3e-99 365.5 338 60.1
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 4.3e-99 365.5 333 58.3
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 5.6e-99 365.2 336 61.9
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 5.6e-99 365.2 334 57.2
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 7.3e-99 364.8 338 61.8
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 9.5e-99 364.4 333 57.7
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 1.2e-98 364.0 338 61.8
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 1.2e-98 364.0 339 59.9
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 1.2e-98 364.0 333 58.0
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 1.6e-98 363.6 338 60.9
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 2.1e-98 363.2 337 59.1
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 2.1e-98 363.2 336 62.5
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 2.1e-98 363.2 333 57.7
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 2.8e-98 362.8 338 60.7
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 2.8e-98 362.8 338 60.1
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 3.6e-98 362.5 338 58.3
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 6.2e-98 361.7 336 61.6
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 1.8e-97 360.1 334 56.6
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 3.1e-97 359.4 322 58.4
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 4.0e-97 359.0 334 56.3
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 4.0e-97 359.0 316 60.4
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 6.8e-97 358.2 380 52.4
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 8.9e-97 357.8 341 58.4
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 1.2e-96 357.5 341 58.9
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 1.2e-96 357.5 341 60.1
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 1.5e-96 357.1 338 58.6
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 2.0e-96 356.7 335 58.8
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 2.6e-96 356.3 338 57.7
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 2.6e-96 356.3 339 56.3
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 2.6e-96 356.3 322 57.8
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 5.8e-96 355.1 338 60.7
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 5.8e-96 355.1 345 55.9
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 7.5e-96 354.8 338 59.8
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 7.5e-96 354.8 338 56.2
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 1.3e-95 354.0 328 58.5
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 1.3e-95 354.0 334 59.0
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 1.7e-95 353.6 316 62.7
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 2.2e-95 353.2 340 60.0
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 2.9e-95 352.8 340 60.3
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 3.7e-95 352.4 310 62.6
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 3.7e-95 352.4 338 60.1
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 6.4e-95 351.7 337 56.1
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 1.1e-94 350.9 337 57.3
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 1.4e-94 350.5 322 59.3
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 1.9e-94 350.1 330 59.1
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.2e-94 349.4 355 54.6
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 4.1e-94 349.0 338 59.8
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 1.2e-93 347.4 340 57.6
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 1.2e-93 347.4 322 58.7
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 2.1e-93 346.7 337 56.4
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 2.7e-93 346.3 339 56.9
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 2.7e-93 346.3 337 58.2
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 3.5e-93 345.9 339 57.2
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 3.5e-93 345.9 343 56.0
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 3.5e-93 345.9 360 56.4
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 6.0e-93 345.1 339 58.7
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 1.0e-92 344.4 339 55.2
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.0e-92 344.4 323 57.6
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 1.7e-92 343.6 322 59.6
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 1.7e-92 343.6 339 55.2
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 2.3e-92 343.2 337 55.5
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 6.6e-92 341.7 330 55.2
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 1.9e-91 340.1 339 54.6
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 4.3e-91 339.0 338 56.8
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 7.3e-91 338.2 334 53.9
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 4.7e-90 335.5 339 54.3
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 4.7e-90 335.5 337 56.7
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 8.1e-90 334.7 341 54.5
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.8e-89 333.6 338 55.9
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.8e-89 333.6 318 60.1
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 4.0e-89 332.4 345 55.7
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 8.9e-89 331.3 337 55.2
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.5e-88 330.5 355 53.0
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 4.4e-88 328.9 338 55.3
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 1.3e-87 327.4 336 56.0
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.4e-86 323.9 328 55.8
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 1.9e-86 323.6 321 55.5
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 4.1e-86 322.4 338 55.6
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 7.1e-86 321.6 337 54.3
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 4.6e-85 318.9 337 52.5
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 1.0e-84 317.8 316 57.6
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 1.3e-84 317.4 318 56.6
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 3.0e-84 316.2 316 56.6
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 8.6e-84 314.7 333 54.1
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.9e-83 313.5 353 52.1
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 4.3e-83 312.4 322 52.8
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 8.1e-82 308.1 372 49.2
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 5.8e-80 302.0 316 55.4
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 2.2e-79 300.1 254 63.4
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.4e-78 297.4 330 51.8
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 7.1e-78 295.0 334 50.6
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.1e-73 281.2 254 59.1
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 4.4e-72 275.8 283 56.2
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 1.4e-70 270.8 329 44.4
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 9.0e-65 251.5 330 46.7
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.4e-62 244.2 221 59.7
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 1.0e-47 194.9 156 63.5
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 6.1e-45 185.7 239 50.6
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 1.3e-44 184.5 205 52.2
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.8e-41 174.1 254 46.9
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 2.2e-34 150.6 145 56.6
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 2.6e-24 117.1 164 47.6
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 4.5e-24 116.3 245 29.0
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 8.8e-20 102.1 296 28.0
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 8.8e-20 102.1 76 64.5
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 1.3e-15 88.2 91 57.1
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 6.8e-12 75.9 88 48.9
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.2e-11 75.1 62 58.1
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 7.5e-11 72.4 241 29.0
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 1.7e-10 71.2 103 38.8
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 2.4e-09 67.4 108 39.8


User provided reference genes

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