Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.9e-112 408.7 225 100.0
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 7.1e-82 307.8 233 73.8
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 1.4e-77 293.5 235 69.8
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 7.3e-63 244.6 187 70.1
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 1.7e-51 206.8 176 68.2
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 2.2e-51 206.5 177 63.3
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 2.2e-51 206.5 178 63.5
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 3.8e-51 205.7 179 65.4
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 3.8e-51 205.7 182 64.3
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 4.9e-51 205.3 177 62.7
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 1.9e-50 203.4 179 63.1
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 1.9e-50 203.4 179 64.2
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 5.5e-50 201.8 178 63.5
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 5.5e-50 201.8 180 63.9
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 7.1e-50 201.4 178 64.6
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 7.1e-50 201.4 178 64.6
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 1.2e-49 200.7 169 62.1
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.2e-49 200.7 180 63.9
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.2e-49 200.7 180 65.6
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 2.7e-49 199.5 176 62.5
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.7e-49 199.5 182 62.1
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 3.5e-49 199.1 178 64.6
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 6.0e-49 198.4 178 64.0
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 6.0e-49 198.4 174 62.6
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 6.0e-49 198.4 180 63.3
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 1.0e-48 197.6 178 64.6
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.3e-48 197.2 177 62.7
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 1.3e-48 197.2 179 61.5
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 1.8e-48 196.8 177 62.1
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 1.8e-48 196.8 177 62.1
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 2.3e-48 196.4 177 62.1
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 3.0e-48 196.1 166 62.0
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 3.0e-48 196.1 181 62.4
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 3.0e-48 196.1 176 62.5
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 3.9e-48 195.7 166 62.0
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 3.9e-48 195.7 178 62.4
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 3.9e-48 195.7 178 62.4
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 5.1e-48 195.3 177 63.3
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 5.1e-48 195.3 178 62.4
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 6.7e-48 194.9 176 61.4
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 6.7e-48 194.9 179 63.1
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 8.7e-48 194.5 177 63.8
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.1e-47 194.1 177 61.6
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 1.1e-47 194.1 174 63.8
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.1e-47 194.1 178 63.5
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 1.5e-47 193.7 131 73.3
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 1.5e-47 193.7 179 62.0
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 1.5e-47 193.7 179 62.0
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.5e-47 193.7 173 63.6
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 1.9e-47 193.4 178 62.9
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 1.9e-47 193.4 178 62.9
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.9e-47 193.4 166 61.4
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 2.5e-47 193.0 178 62.4
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 2.5e-47 193.0 179 62.6
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 3.3e-47 192.6 166 61.4
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 4.3e-47 192.2 178 62.4
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 4.3e-47 192.2 178 62.4
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 4.3e-47 192.2 178 62.4
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.3e-47 192.2 178 60.1
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 4.3e-47 192.2 176 62.5
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 4.3e-47 192.2 177 61.6
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 5.6e-47 191.8 174 62.1
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 5.6e-47 191.8 174 61.5
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 5.6e-47 191.8 174 62.1
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 5.6e-47 191.8 176 61.4
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 7.4e-47 191.4 183 60.7
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 9.6e-47 191.0 176 61.4
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 9.6e-47 191.0 176 61.4
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 1.3e-46 190.7 176 63.1
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 1.3e-46 190.7 174 62.6
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 1.3e-46 190.7 177 62.1
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 1.3e-46 190.7 128 73.4
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 1.6e-46 190.3 134 69.4
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.6e-46 190.3 178 61.2
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 1.6e-46 190.3 176 61.9
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.6e-46 190.3 176 61.9
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 2.1e-46 189.9 177 61.0
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 2.8e-46 189.5 176 61.4
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 2.8e-46 189.5 165 63.0
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 2.8e-46 189.5 176 58.5
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 3.7e-46 189.1 138 71.0
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 3.7e-46 189.1 173 59.5
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 4.8e-46 188.7 167 62.9
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 8.1e-46 188.0 174 59.8
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 8.1e-46 188.0 174 59.8
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 8.1e-46 188.0 173 61.8
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 1.1e-45 187.6 177 58.2
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 1.1e-45 187.6 166 60.2
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.1e-45 187.6 176 61.4
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 1.8e-45 186.8 176 61.9
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.4e-45 186.4 178 60.1
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 2.4e-45 186.4 177 60.5
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 3.1e-45 186.0 174 61.5
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 4.0e-45 185.7 175 60.6
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 5.3e-45 185.3 178 59.0
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 5.3e-45 185.3 174 60.9
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 6.9e-45 184.9 138 70.3
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 6.9e-45 184.9 178 58.4
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 6.9e-45 184.9 177 61.0
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 6.9e-45 184.9 180 60.0
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 6.9e-45 184.9 177 58.8
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 6.9e-45 184.9 174 59.8
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 6.9e-45 184.9 174 62.1
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 6.9e-45 184.9 178 59.0
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 1.2e-44 184.1 182 58.2
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 1.2e-44 184.1 127 72.4
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.0e-44 183.3 178 59.0
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.0e-44 183.3 178 59.0
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 2.6e-44 183.0 178 61.8
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 3.4e-44 182.6 131 71.0
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 4.5e-44 182.2 149 64.4
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 4.5e-44 182.2 176 59.7
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 5.8e-44 181.8 178 58.4
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.7e-43 180.3 176 59.1
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 1.7e-43 180.3 174 59.2
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.2e-43 179.9 176 58.5
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 3.8e-43 179.1 138 68.8
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 3.8e-43 179.1 173 58.4
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 4.9e-43 178.7 176 58.5
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.9e-42 176.8 176 58.0
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 3.2e-42 176.0 177 58.2
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 2.1e-41 173.3 177 54.8
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 3.5e-41 172.6 151 63.6
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 3.5e-41 172.6 127 66.1
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 4.6e-41 172.2 177 56.5
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 4.6e-41 172.2 135 66.7
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 6.0e-41 171.8 177 57.6
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 7.9e-41 171.4 127 70.9
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 5.1e-40 168.7 174 56.9
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 2.5e-39 166.4 123 69.9
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 9.6e-39 164.5 171 53.8
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 3.7e-38 162.5 129 64.3
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 3.7e-38 162.5 178 51.7
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 1.1e-37 161.0 116 69.8
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 1.8e-37 160.2 179 49.7
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 3.1e-37 159.5 177 50.3
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 4.1e-37 159.1 117 70.1
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 4.5e-36 155.6 249 43.4
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 2.2e-35 153.3 175 49.7
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.3e-32 144.1 193 45.1
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 7.2e-26 121.7 85 68.2
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 3.6e-25 119.4 125 58.4
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 7.9e-25 118.2 87 63.2
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.4e-24 117.5 82 69.5
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 8.8e-24 114.8 109 56.9
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.5e-23 114.0 82 67.1
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 4.3e-23 112.5 103 62.1
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 3.7e-22 109.4 127 49.6
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 6.3e-22 108.6 128 49.2
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.8e-21 107.1 143 44.1
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 5.3e-21 105.5 118 55.9
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 1.2e-20 104.4 178 39.9
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 1.0e-19 101.3 122 45.1
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 1.3e-19 100.9 96 62.5
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 1.3e-19 100.9 96 62.5
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 7.2e-18 95.1 95 44.2
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 3.2e-10 69.7 94 54.3
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 3.6e-09 66.2 106 34.0
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.4e-08 64.3 87 49.4
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 1.4e-08 64.3 52 65.4
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 3.0e-08 63.2 79 44.3
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.7e-06 56.2 42 64.3


User provided reference genes

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