Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 0.0e+00 1423.7 752 100.0
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.6e-231 806.6 433 92.8
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.8e-198 696.8 483 73.5
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 6.9e-198 694.9 430 78.1
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 7.6e-197 691.4 476 72.5
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 9.9e-197 691.0 431 77.7
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 1.3e-196 690.6 430 78.6
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 1.9e-195 686.8 429 78.3
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 3.2e-195 686.0 429 78.3
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 3.2e-195 686.0 431 77.0
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 4.2e-195 685.6 431 76.6
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 4.2e-195 685.6 477 72.1
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 4.2e-195 685.6 432 76.6
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 1.2e-194 684.1 444 75.7
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.2e-194 684.1 446 75.6
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 1.2e-194 684.1 431 77.0
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 2.7e-194 682.9 431 76.6
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 6.0e-194 681.8 431 76.8
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 6.0e-194 681.8 431 76.6
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.3e-193 680.6 431 76.6
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.7e-193 680.2 476 71.2
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.7e-193 680.2 446 75.3
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 2.3e-193 679.9 427 77.0
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 3.0e-193 679.5 429 77.4
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 5.1e-193 678.7 430 77.2
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 5.1e-193 678.7 433 76.4
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 5.1e-193 678.7 430 77.2
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 6.6e-193 678.3 430 76.0
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 8.7e-193 677.9 431 76.8
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.9e-192 676.8 508 68.1
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 2.5e-192 676.4 431 76.8
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 2.5e-192 676.4 428 76.2
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 2.5e-192 676.4 429 76.5
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 3.3e-192 676.0 476 71.0
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 4.3e-192 675.6 445 74.2
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 7.3e-192 674.9 476 71.4
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 7.3e-192 674.9 428 75.7
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 7.3e-192 674.9 500 68.4
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 9.6e-192 674.5 511 67.5
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 1.3e-191 674.1 446 74.4
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 1.6e-191 673.7 493 69.8
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 2.1e-191 673.3 446 74.7
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.8e-191 672.9 446 74.0
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 3.6e-191 672.5 428 75.7
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 3.6e-191 672.5 429 76.2
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 3.6e-191 672.5 446 74.4
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 3.6e-191 672.5 515 67.6
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 6.2e-191 671.8 506 68.0
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 6.2e-191 671.8 431 75.9
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 6.2e-191 671.8 520 65.8
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 8.1e-191 671.4 431 75.2
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.1e-190 671.0 433 75.3
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 1.4e-190 670.6 509 66.6
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.8e-190 670.2 447 72.7
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.4e-190 669.8 481 69.2
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 4.0e-190 669.1 502 66.9
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 5.3e-190 668.7 520 65.8
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.2e-189 667.5 447 72.0
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 2.0e-189 666.8 479 69.3
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.6e-189 666.4 446 73.8
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 3.4e-189 666.0 450 74.2
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 4.5e-189 665.6 433 74.6
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 5.8e-189 665.2 478 69.7
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 7.6e-189 664.8 445 72.6
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.3e-188 664.1 429 76.7
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.2e-188 663.3 430 74.9
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 3.8e-188 662.5 430 74.9
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 4.9e-188 662.1 430 74.9
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 6.4e-188 661.8 430 73.3
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 2.4e-187 659.8 482 69.1
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.2e-187 659.4 527 66.2
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 5.4e-187 658.7 430 74.0
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 7.1e-187 658.3 536 63.4
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 9.3e-187 657.9 480 69.4
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 1.6e-186 657.1 432 75.9
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 2.1e-186 656.8 508 65.7
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 2.7e-186 656.4 429 74.1
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 3.5e-186 656.0 431 73.5
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.5e-186 656.0 510 66.1
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 3.5e-186 656.0 431 73.5
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 6.0e-186 655.2 430 73.7
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 6.0e-186 655.2 431 73.1
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 1.0e-185 654.4 431 73.1
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 2.3e-185 653.3 431 72.6
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 3.0e-185 652.9 431 72.9
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 3.9e-185 652.5 429 73.7
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 6.7e-185 651.7 431 72.4
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 1.5e-184 650.6 444 72.5
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.5e-184 650.6 452 71.2
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 1.9e-184 650.2 431 72.4
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 2.5e-184 649.8 431 72.6
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 5.6e-184 648.7 492 66.7
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 9.6e-184 647.9 512 64.6
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 2.1e-183 646.7 431 72.6
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 2.8e-183 646.4 412 75.0
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 2.8e-183 646.4 431 72.2
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.1e-182 644.4 431 72.6
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 9.0e-182 641.3 453 70.4
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.2e-181 641.0 463 68.0
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 5.8e-181 638.6 481 67.6
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 7.6e-181 638.3 415 74.7
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 7.6e-181 638.3 405 76.8
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 9.9e-181 637.9 480 67.9
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.1e-179 634.4 450 69.8
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 5.5e-179 632.1 428 71.0
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 1.0e-177 627.9 522 62.3
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 1.3e-177 627.5 430 69.8
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.6e-175 620.5 437 70.9
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 2.1e-175 620.2 427 69.3
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 4.2e-171 605.9 424 68.2
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 4.6e-170 602.4 371 77.9
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.0e-169 601.3 431 69.6
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 1.3e-169 600.9 431 68.2
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 2.2e-167 593.6 373 76.1
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.8e-166 590.5 429 68.5
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 5.9e-165 585.5 427 64.9
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 1.4e-158 564.3 431 65.7
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 9.1e-158 561.6 448 66.1
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 8.5e-156 555.1 412 69.7
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.1e-155 554.7 352 76.7
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.5e-155 553.5 352 76.7
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 4.5e-149 532.7 431 64.3
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 9.4e-147 525.0 430 62.3
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 2.7e-146 523.5 364 72.8
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 2.4e-142 510.4 395 63.8
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 4.1e-142 509.6 737 41.9
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 2.0e-141 507.3 427 62.5
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 6.5e-132 475.7 309 77.0
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.0e-121 441.8 411 57.9
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.6e-106 391.3 238 79.4
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 4.4e-96 356.7 293 61.1
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 3.2e-94 350.5 286 63.6
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 8.7e-84 315.8 238 70.2
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 1.5e-83 315.1 487 38.4
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 4.8e-82 310.1 423 40.4
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 6.9e-81 306.2 422 40.5
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 6.9e-81 306.2 200 75.0
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-72 278.9 214 67.3
Zm00001eb396360 Zea mays HOM05D004194 ORTHO05D442023 3.7e-66 257.3 355 53.0
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 2.1e-58 231.5 131 83.2
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 3.7e-58 230.7 384 38.5
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 1.9e-54 218.4 195 59.0
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 2.7e-53 214.5 165 66.7
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 3.0e-52 211.1 164 63.4
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 5.7e-51 206.8 196 56.1
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 3.3e-43 181.0 98 87.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.3e-42 179.1 421 29.7
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 4.1e-41 174.1 249 41.8
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 7.7e-40 169.9 124 63.7
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 4.4e-35 154.1 133 54.1
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 7.4e-35 153.3 117 65.0
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 4.8e-34 150.6 108 68.5
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 2.0e-32 145.2 89 79.8
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 7.2e-30 136.7 80 78.8
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 3.3e-27 127.9 124 53.2
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 5.7e-27 127.1 93 69.9
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 2.8e-26 124.8 74 79.7
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 1.4e-25 122.5 297 29.3
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 1.2e-24 119.4 105 59.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.6e-24 119.0 91 61.5
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 3.4e-11 74.7 47 70.2
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 7.5e-11 73.6 43 74.4
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 9.1e-09 66.6 56 55.4
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.0e-07 63.2 36 75.0
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 6.6e-07 60.5 35 74.3
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 1.9e-06 58.9 38 73.7
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 7.2e-06 57.0 34 73.5
SMO197G0092 Selaginella moellendorffii HOM05D003197 ORTHO05D003769 7.2e-06 57.0 223 28.3


User provided reference genes

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