Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0300300 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 0.0e+00 1188.7 638 100.0
Zm00001eb013980 Zea mays HOM05D002282 ORTHO05D002403 1.7e-258 896.0 641 72.5
CSS0020497 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 5.7e-153 545.4 643 46.2
TAR365G0623 Trochodendron aralioides HOM05D002282 ORTHO05D002403 9.7e-153 544.7 639 45.7
GSVIVG01035079001 Vitis vinifera HOM05D002282 ORTHO05D002403 5.5e-148 528.9 643 44.0
Cfa006257 Carpinus fangiana HOM05D002282 ORTHO05D004557 2.7e-147 526.6 643 47.1
Thecc.04G291300 Theobroma cacao HOM05D002282 ORTHO05D002403 4.7e-147 525.8 644 46.4
Nn8g40612 Nelumbo nucifera HOM05D002282 ORTHO05D002403 1.8e-146 523.9 637 47.4
HPP92_021476 Vanilla planifolia HOM05D002282 ORTHO05D002403 1.8e-146 523.9 637 49.0
THA.LOC104805829 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 3.0e-146 523.1 641 45.7
TWI09G1448 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 5.2e-146 522.3 639 46.2
Ciclev10004544m.g Citrus clementina HOM05D002282 ORTHO05D002403 1.5e-145 520.8 643 45.4
MBI19_g05149_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 2.6e-145 520.0 612 46.2
Manes.15G008900 Manihot esculenta HOM05D002282 ORTHO05D002403 2.8e-144 516.5 642 47.2
vmacro02293 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 1.4e-143 514.2 660 43.8
ClCG06G004860 Citrullus lanatus HOM05D002282 ORTHO05D002403 1.2e-142 511.1 645 45.9
Prupe.1G129200 Prunus persica HOM05D002282 ORTHO05D002403 1.2e-142 511.1 646 45.5
Potri.010G005400 Populus trichocarpa HOM05D002282 ORTHO05D002403 2.0e-142 510.4 636 45.4
Cfa015451 Carpinus fangiana HOM05D002282 ORTHO05D002403 2.7e-142 510.0 643 44.5
DCAR_027041 Daucus carota HOM05D002282 ORTHO05D002403 4.5e-142 509.2 649 44.5
Haze_04567 Corylus avellana HOM05D002282 ORTHO05D002403 5.9e-142 508.8 666 43.5
MD13G1161900 Malus domestica HOM05D002282 ORTHO05D002403 1.0e-141 508.1 647 45.4
MD16G1161700 Malus domestica HOM05D002282 ORTHO05D002403 1.0e-141 508.1 642 45.5
CiPaw.01G144200 Carya illinoinensis HOM05D002282 ORTHO05D002403 2.2e-141 506.9 641 45.7
FAN02G0515 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.2e-141 506.9 638 47.3
FAN09G1184 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.5e-140 504.2 638 45.6
Sabra10G0004600 Salix brachista HOM05D002282 ORTHO05D002403 1.9e-140 503.8 605 45.5
FAN05G0042 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.5e-140 503.4 638 45.8
Dinv29708 Davidia involucrata HOM05D002282 ORTHO05D002403 7.2e-140 501.9 612 44.6
RcHm_v2.0_Chr4g0423831 Rosa chinensis HOM05D002282 ORTHO05D002403 7.2e-140 501.9 645 44.5
CANSAT35G1122 Cannabis sativa HOM05D002282 ORTHO05D002403 9.4e-140 501.5 640 44.5
Gohir.D09G062700 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.2e-139 501.1 643 44.6
Peaxi162Scf00065g01016 Petunia axillaris HOM05D002282 ORTHO05D002403 1.6e-139 500.7 642 45.0
arahy.Tifrunner.gnm1.ann1.3PI56D Arachis hypogaea HOM05D002282 ORTHO05D002403 4.7e-139 499.2 638 43.9
Gorai.006G077500 Gossypium raimondii HOM05D002282 ORTHO05D002403 4.7e-139 499.2 637 45.4
Lalb_Chr12g0201081 Lupinus albus HOM05D002282 ORTHO05D002403 8.0e-139 498.4 641 43.8
QL06p010943 Quercus lobata HOM05D002282 ORTHO05D002403 8.0e-139 498.4 649 45.3
Lj3A826G75 Lonicera japonica HOM05D002282 ORTHO05D002403 1.0e-138 498.0 583 44.4
Rhsim02G0006600 Rhododendron simsii HOM05D002282 ORTHO05D002403 6.8e-138 495.4 626 45.4
arahy.Tifrunner.gnm1.ann1.C0TKG5 Arachis hypogaea HOM05D002282 ORTHO05D002403 1.2e-137 494.6 638 45.3
Carub.0006s0971 Capsella rubella HOM05D002282 ORTHO05D002403 1.2e-137 494.6 641 43.7
Lj4g0005439 Lotus japonicus HOM05D002282 ORTHO05D002403 1.2e-137 494.6 636 44.5
Lj4g0022588 Lotus japonicus HOM05D002282 ORTHO05D002403 1.2e-137 494.6 636 44.5
Glyma.07G244100 Glycine max HOM05D002282 ORTHO05D002403 2.0e-137 493.8 640 45.8
Sed0017061 Sechium edule HOM05D002282 ORTHO05D002403 5.7e-137 492.3 648 43.7
Solyc02g030080.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 5.7e-137 492.3 642 44.4
Sopen02g009400 Solanum pennellii HOM05D002282 ORTHO05D002403 5.7e-137 492.3 638 44.8
Thhalv10012983m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 7.5e-137 491.9 636 44.5
Gohir.A09G063800 Gossypium hirsutum HOM05D002282 ORTHO05D002403 9.8e-137 491.5 595 46.6
Aqoxy7G01538 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 2.2e-136 490.3 645 43.9
Oeu006431.1 Olea europaea HOM05D002282 ORTHO05D002403 2.2e-136 490.3 641 43.1
PGSC0003DMG400011805 Solanum tuberosum HOM05D002282 ORTHO05D002403 2.2e-136 490.3 636 44.3
Cc03_g01330 Coffea canephora HOM05D002282 ORTHO05D002403 2.8e-136 490.0 638 42.6
Glyma.17G029800 Glycine max HOM05D002282 ORTHO05D002403 4.8e-136 489.2 640 45.5
Cpa.g.sc9.113 Carica papaya HOM05D002282 ORTHO05D002403 3.1e-135 486.5 641 42.9
PSO407G0173 Papaver somniferum HOM05D002282 ORTHO05D002403 3.1e-135 486.5 642 45.2
BraA02t05075Z Brassica rapa HOM05D002282 ORTHO05D002403 5.4e-135 485.7 638 44.2
Migut.G00119 Erythranthe guttata HOM05D002282 ORTHO05D002403 5.4e-135 485.7 637 41.8
A10p26480 Brassica napus HOM05D002282 ORTHO05D002403 7.0e-135 485.3 642 42.7
PSO170G5250 Papaver somniferum HOM05D002282 ORTHO05D002403 1.2e-134 484.6 616 44.5
BraA10t44705Z Brassica rapa HOM05D002282 ORTHO05D002403 2.0e-134 483.8 637 43.2
Ca_21469_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 2.0e-134 483.8 615 43.6
BcaB08g37077 Brassica carinata HOM05D002282 ORTHO05D002403 7.7e-134 481.9 588 44.7
Sp6g32320 Schrenkiella parvula HOM05D002282 ORTHO05D002403 7.7e-134 481.9 636 42.5
AL6G21870 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 1.3e-133 481.1 585 45.1
Psat4g024880 Pisum sativum HOM05D002282 ORTHO05D002403 1.7e-133 480.7 609 44.0
BolC9t59386H Brassica oleracea HOM05D002282 ORTHO05D002403 2.3e-133 480.3 638 42.8
CsaV3_6G022650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 2.9e-133 479.9 652 43.4
BcaC04g19248 Brassica carinata HOM05D002282 ORTHO05D002403 5.0e-133 479.2 638 42.8
C09p65630 Brassica napus HOM05D002282 ORTHO05D002403 6.6e-133 478.8 638 42.8
CAN.G306.6 Capsicum annuum HOM05D002282 ORTHO05D002403 8.6e-133 478.4 639 42.6
AT5G11240 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 1.1e-132 478.0 641 42.6
VMungo1215G3370 Vigna mungo HOM05D002282 ORTHO05D002403 9.5e-132 474.9 641 45.6
HanXRQChr03g0084951 Helianthus annuus HOM05D002282 ORTHO05D002403 1.2e-131 474.6 603 43.6
BcaNung01920 Brassica carinata HOM05D002282 ORTHO05D002403 4.7e-131 472.6 636 43.2
A02p00910 Brassica napus HOM05D002282 ORTHO05D002403 8.0e-131 471.9 638 42.8
TPR.G4827 Trifolium pratense HOM05D002282 ORTHO05D002403 1.0e-130 471.5 642 41.7
MSTRG.10121 Avicennia marina HOM05D002282 ORTHO05D002403 1.4e-130 471.1 642 41.7
Eucgr.A01301 Eucalyptus grandis HOM05D002282 ORTHO05D002403 1.4e-130 471.1 640 41.1
Phvul.003G108800 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 1.8e-130 470.7 645 44.8
PGR031G2323 Punica granatum HOM05D002282 ORTHO05D002403 2.3e-130 470.3 618 45.1
ECA240G0914 Erigeron canadensis HOM05D002282 ORTHO05D002403 1.5e-129 467.6 592 43.9
Medtr4g120740 Medicago truncatula HOM05D002282 ORTHO05D002403 2.0e-126 457.2 613 41.8
vmacro13795 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 3.5e-126 456.4 552 44.9
EL10Ac3g04935 Beta vulgaris HOM05D002282 ORTHO05D002403 1.7e-125 454.1 645 40.0
Lsat_1_v5_gn_6_76141 Lactuca sativa HOM05D002282 ORTHO05D002403 2.9e-125 453.4 598 41.5
Atru.chr4.2932 Acer truncatum HOM05D002282 ORTHO05D002403 3.8e-125 453.0 637 42.4
Lj5A688G9 Lonicera japonica HOM05D002282 ORTHO05D002403 3.3e-124 449.9 558 42.1
ATR0693G215 Amborella trichopoda HOM05D002282 ORTHO05D002403 2.1e-123 447.2 655 42.1
AUR62016160 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.6e-121 440.3 598 41.8
AUR62035074 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.6e-121 440.3 587 41.4
FvH4_6g31810 Fragaria vesca HOM05D002282 ORTHO05D002403 3.4e-121 439.9 537 46.9
CDE05G3405 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 2.9e-120 436.8 635 39.2
Hund11944 Selenicereus undatus HOM05D002282 ORTHO05D002403 8.3e-120 435.3 642 40.5
SGA_v2.0_scaffold146G36232 Striga asiatica HOM05D002282 ORTHO05D002403 8.3e-120 435.3 630 43.2
Aa31LG3G15950 Aethionema arabicum HOM05D002282 ORTHO05D002403 1.1e-119 434.9 663 39.4
Nitab4.5_0000378g0050 Nicotiana tabacum HOM05D002282 ORTHO05D002403 9.2e-119 431.8 634 40.4
Duzib052G0572 Durio zibethinus HOM05D002282 ORTHO05D002403 1.5e-116 424.5 636 41.4
MELO3C021295.2 Cucumis melo HOM05D002282 ORTHO05D002403 2.5e-116 423.7 645 40.9
Nitab4.5_0001298g0020 Nicotiana tabacum HOM05D002282 ORTHO05D002403 3.3e-116 423.3 645 39.7
Sc19g0003390 Simmondsia chinensis HOM05D002282 ORTHO05D002403 1.5e-113 414.5 529 43.3
Ah.04g155130 Amaranthus hybridus HOM05D002282 ORTHO05D002403 6.6e-109 399.1 627 39.1
FAN14G3556 Fragaria x ananassa HOM05D002282 ORTHO05D002403 6.6e-109 399.1 409 51.8
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 1.2e-99 368.2 584 38.0
CDE11G1255 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 3.2e-95 353.6 595 36.3
Nitab4.5_0004432g0020 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.2e-94 351.7 644 34.6
Actinidia14272 Actinidia chinensis HOM05D002282 ORTHO05D002403 2.1e-94 350.9 464 40.9
Actinidia02885 Actinidia chinensis HOM05D002282 ORTHO05D002403 2.5e-92 344.0 378 46.3
unitig_37.g12403 Utricularia gibba HOM05D002282 ORTHO05D002403 5.1e-85 319.7 640 35.6
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 6.0e-78 296.2 662 32.8
Haze_01137 Corylus avellana HOM05D002282 ORTHO05D002403 5.3e-74 283.1 466 41.0
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 1.7e-72 278.1 617 30.5
AUR62044456 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.2e-72 277.7 251 52.2
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 4.9e-72 276.6 618 30.7
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 1.6e-62 245.0 595 31.3
CARHR202100 Cardamine hirsuta HOM05D002282 ORTHO05D002403 2.5e-60 237.7 181 61.9
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 3.3e-60 237.3 575 32.9
Actinidia13378 Actinidia chinensis HOM05D002282 ORTHO05D002403 7.4e-60 236.1 185 59.5
Haze_01140 Corylus avellana HOM05D002282 ORTHO05D002403 1.6e-54 218.4 167 61.1
COL.COLO4_03675 Corchorus olitorius HOM05D002282 ORTHO05D002403 2.1e-54 218.0 176 59.1
Glyma.10G110200 Glycine max HOM05D002282 ORTHO05D002403 7.4e-52 209.5 186 53.8
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 2.2e-51 208.0 639 25.7
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 1.2e-49 202.2 625 26.6
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 5.9e-49 199.9 612 27.0
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 7.7e-49 199.5 657 27.1
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 3.8e-48 197.2 660 25.3
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 6.5e-48 196.4 612 27.9
Actinidia13377 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.1e-47 195.7 264 41.3
CAN.G14.16 Capsicum annuum HOM05D002282 ORTHO05D002403 2.5e-47 194.5 304 37.8
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 2.5e-47 194.5 561 28.9
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 1.2e-46 192.2 619 25.5
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 7.9e-46 189.5 625 25.1
COL.COLO4_34694 Corchorus olitorius HOM05D002282 ORTHO05D002403 7.9e-46 189.5 283 41.7
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 1.0e-45 189.1 614 24.8
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 5.1e-45 186.8 639 26.9
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 4.4e-44 183.7 684 27.0
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 7.4e-44 183.0 626 25.1
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 2.8e-43 181.0 607 26.5
MSTRG.21910 Avicennia marina HOM05D002282 ORTHO05D002403 4.8e-43 180.3 214 45.3
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 8.2e-43 179.5 348 31.9
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 1.5e-41 175.3 596 24.5
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 2.0e-41 174.9 607 26.4
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 3.5e-41 174.1 606 26.7
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 7.7e-41 172.9 611 24.5
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.3e-40 172.2 608 25.2
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 1.3e-40 172.2 613 26.3
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 5.0e-40 170.2 604 24.3
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 6.5e-40 169.9 650 24.3
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 4.2e-39 167.2 608 21.9
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 5.5e-39 166.8 654 26.0
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 5.5e-39 166.8 618 26.7
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 7.2e-39 166.4 611 23.1
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 6.1e-38 163.3 616 24.7
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 1.8e-37 161.8 654 24.6
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 1.5e-36 158.7 636 24.1
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 3.3e-36 157.5 551 24.7
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 4.4e-36 157.1 608 23.5
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 9.7e-36 156.0 599 23.4
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 3.7e-35 154.1 634 24.3
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 8.2e-35 152.9 609 23.5
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 3.1e-34 151.0 560 24.8
TPR.G38626 Trifolium pratense HOM05D002282 ORTHO05D002403 3.1e-34 151.0 381 28.6
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 1.6e-33 148.7 560 25.0
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 3.5e-33 147.5 557 24.4
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 3.5e-33 147.5 579 24.9
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 7.7e-33 146.4 604 23.5
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 2.2e-32 144.8 434 28.3
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 3.8e-32 144.1 668 26.2
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 4.7e-30 137.1 652 23.2
Zm00001eb396530 Zea mays HOM05D002282 ORTHO05D002403 3.0e-29 134.4 213 40.4
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 1.5e-28 132.1 584 22.4
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 3.4e-28 131.0 609 25.6
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 7.5e-28 129.8 499 25.5
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 3.5e-25 120.9 587 23.7
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 4.5e-25 120.6 360 26.1
CARHR202090 Cardamine hirsuta HOM05D002282 ORTHO05D002403 4.7e-22 110.5 297 30.3
C02p04930 Brassica napus HOM05D002282 ORTHO05D002403 8.8e-21 106.3 84 57.1
BolC2t06451H Brassica oleracea HOM05D002282 ORTHO05D002403 8.8e-21 106.3 84 57.1
SalBow2G2202 Salvia bowleyana HOM05D002282 ORTHO05D002403 5.4e-18 97.1 202 33.2
PRCOL_00005222 Prasinoderma coloniale HOM05D002282 ORTHO05D002403 1.5e-15 89.0 299 25.4
Actinidia15800 Actinidia chinensis HOM05D002282 ORTHO05D002403 5.2e-13 80.5 132 29.5
Nn3g21580 Nelumbo nucifera HOM05D002282 ORTHO05D002403 4.4e-12 77.4 67 49.3
PRCOL_00000654 Prasinoderma coloniale HOM05D002282 ORTHO05D002403 4.9e-11 73.9 183 30.1
CAN.G385.14 Capsicum annuum HOM05D002282 ORTHO05D002403 2.0e-09 68.6 220 29.1
Eucgr.A01314 Eucalyptus grandis HOM05D002282 ORTHO05D002403 3.5e-09 67.8 75 46.7
Actinidia14273 Actinidia chinensis HOM05D000338 ORTHO05D002403 4.3e-07 60.8 43 60.5


User provided reference genes

Program Settings