Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 5.5e-306 1053.5 544 100.0
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.7e-252 875.2 484 94.0
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.6e-220 769.6 485 81.0
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 7.9e-212 740.7 484 79.3
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 1.5e-191 673.3 484 75.2
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 6.1e-164 581.6 481 64.0
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.2e-162 577.4 483 63.1
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 5.7e-162 575.1 472 63.1
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.3e-161 573.9 482 62.7
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 2.4e-160 569.7 490 61.8
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 7.0e-160 568.2 471 63.1
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 1.6e-159 567.0 472 62.9
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 2.7e-159 566.2 470 63.4
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 4.5e-159 565.5 480 63.1
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 4.5e-159 565.5 475 62.9
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 5.9e-159 565.1 472 62.3
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 1.3e-158 563.9 470 63.0
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 2.3e-158 563.1 489 61.3
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 2.3e-158 563.1 491 61.1
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 2.9e-158 562.8 479 62.8
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 2.9e-158 562.8 475 62.5
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 3.8e-158 562.4 476 62.4
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 6.6e-158 561.6 474 63.1
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 1.1e-157 560.8 477 61.8
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.1e-157 560.8 475 61.5
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 1.9e-157 560.1 478 62.1
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.9e-157 560.1 485 61.9
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 2.5e-157 559.7 491 60.9
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 3.3e-157 559.3 478 63.4
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 4.2e-157 558.9 477 61.6
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 7.2e-157 558.1 475 61.5
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 9.5e-157 557.8 479 61.8
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.0e-155 554.3 487 60.0
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 1.0e-155 554.3 486 61.3
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 1.8e-155 553.5 475 61.9
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 4.0e-155 552.4 475 61.7
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 4.0e-155 552.4 469 61.4
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 6.8e-155 551.6 479 61.4
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 8.9e-155 551.2 508 57.5
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 8.9e-155 551.2 477 61.4
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 1.2e-154 550.8 486 60.1
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 1.2e-154 550.8 474 62.2
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 2.6e-154 549.7 475 61.5
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 2.6e-154 549.7 472 61.7
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 2.6e-154 549.7 475 61.1
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 7.5e-154 548.1 475 61.3
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 7.5e-154 548.1 479 59.7
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 9.8e-154 547.7 469 61.8
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.8e-153 546.2 469 61.6
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 2.8e-153 546.2 474 60.8
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.9e-153 545.4 469 61.6
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 6.3e-153 545.0 471 60.9
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 6.3e-153 545.0 476 61.1
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 8.3e-153 544.7 475 61.3
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 8.3e-153 544.7 473 61.3
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 1.1e-152 544.3 474 60.3
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 1.4e-152 543.9 474 61.2
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.1e-152 542.7 469 61.0
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 5.4e-152 542.0 473 60.9
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 5.4e-152 542.0 478 60.7
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 9.2e-152 541.2 469 61.0
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 1.2e-151 540.8 471 61.1
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 2.7e-151 539.7 508 58.3
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 3.5e-151 539.3 478 59.6
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 1.7e-150 537.0 496 57.9
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 2.9e-150 536.2 473 60.3
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 3.9e-150 535.8 476 61.6
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 5.0e-150 535.4 471 60.3
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 5.0e-150 535.4 471 60.1
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.1e-149 534.3 475 60.6
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 3.3e-149 532.7 475 58.7
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 3.6e-148 529.3 477 57.7
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 1.0e-147 527.7 557 54.0
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 1.8e-147 526.9 475 59.6
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 2.3e-147 526.6 430 64.2
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 1.5e-146 523.9 472 57.6
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 2.0e-146 523.5 506 57.9
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 2.0e-146 523.5 473 59.6
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 1.7e-145 520.4 477 58.5
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 2.9e-145 519.6 476 57.1
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 6.4e-145 518.5 472 57.4
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.1e-144 517.7 477 57.0
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 1.4e-144 517.3 472 57.2
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 3.2e-144 516.2 433 63.7
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 7.0e-144 515.0 498 57.0
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 2.0e-143 513.5 477 56.6
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 2.0e-143 513.5 477 56.6
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.2e-140 504.2 474 56.3
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 1.2e-140 504.2 497 54.3
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 2.1e-140 503.4 472 56.4
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 1.8e-139 500.4 513 54.8
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 3.4e-138 496.1 493 56.2
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 1.3e-137 494.2 440 60.7
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 2.7e-135 486.5 446 57.6
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 3.5e-135 486.1 477 54.5
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 1.3e-134 484.2 504 52.8
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 3.0e-134 483.0 435 58.4
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.9e-134 482.6 469 56.3
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 7.3e-133 478.4 475 54.9
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 1.7e-129 467.2 438 55.5
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 2.4e-128 463.4 428 58.4
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.0e-126 458.0 486 53.5
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 3.0e-126 456.4 493 52.3
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.1e-125 454.5 418 58.9
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 2.5e-125 453.4 486 52.1
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.2e-122 444.5 499 50.5
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 9.9e-122 441.4 505 49.3
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 5.4e-120 435.6 450 52.9
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.1e-119 433.7 391 59.1
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.7e-118 430.6 474 53.0
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 1.5e-117 427.6 533 48.2
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 3.3e-117 426.4 481 49.9
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.4e-115 420.2 363 63.4
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 5.3e-115 419.1 305 69.2
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 9.0e-115 418.3 385 59.0
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 1.7e-113 414.1 497 48.7
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 5.4e-112 409.1 360 61.9
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 1.0e-110 404.8 360 61.9
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.2e-106 391.3 397 55.7
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 9.3e-104 381.7 355 58.6
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 3.5e-103 379.8 258 71.7
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 3.9e-94 349.7 369 54.7
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 1.1e-91 341.7 518 40.7
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 2.0e-90 337.4 338 56.2
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 5.1e-86 322.8 433 46.7
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 7.7e-74 282.3 373 48.3
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 9.4e-72 275.4 320 51.2
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.5e-66 258.1 218 62.8
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 7.7e-66 255.8 326 49.7
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 1.4e-59 235.0 405 36.8
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 4.7e-55 219.9 215 54.9
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 1.4e-54 218.4 312 41.3
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 9.8e-53 212.2 284 45.4
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 9.1e-51 205.7 181 56.4
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.7e-47 193.4 127 71.7
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 4.7e-47 193.4 343 37.9
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.8e-38 164.9 110 70.0
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 8.9e-38 162.5 110 69.1
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 9.8e-37 159.1 207 47.3
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.9e-36 157.5 110 68.2
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 6.8e-30 136.3 94 66.0
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.2e-27 127.5 87 66.7
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 4.3e-24 117.1 334 28.1
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 2.1e-23 114.8 128 48.4
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.7e-20 105.1 68 70.6
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 6.4e-20 103.2 195 38.5
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 3.7e-12 77.4 65 58.5
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 5.4e-11 73.6 80 50.0
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 5.1e-09 67.0 42 69.0
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 5.6e-08 63.5 72 47.2
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 1.2e-07 62.4 38 73.7
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.2e-07 62.4 67 49.3
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.1e-06 57.8 37 67.6
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 4.0e-06 57.4 45 57.8


User provided reference genes

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