Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0201700 Oryza sativa ssp. japonica HOM05D006028 ORTHO05D007784 3.5e-214 748.0 385 100.0
Zm00001eb007750 Zea mays HOM05D006028 ORTHO05D007784 1.6e-163 579.7 385 77.1
CANSAT78G1220 Cannabis sativa HOM05D006028 ORTHO05D007784 3.5e-97 359.4 386 52.1
Aqoxy4G02499 Aquilegia oxysepala HOM05D006028 ORTHO05D007784 2.3e-96 356.7 385 50.9
Prupe.3G142900 Prunus persica HOM05D006028 ORTHO05D007784 1.5e-95 354.0 388 49.7
Gorai.008G055200 Gossypium raimondii HOM05D006028 ORTHO05D007784 5.6e-95 352.1 385 50.1
Gohir.A12G053400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.2e-94 350.9 385 50.1
Gohir.D12G052100 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.2e-94 350.9 385 50.1
TAR629G2682 Trochodendron aralioides HOM05D006028 ORTHO05D007784 2.1e-94 350.1 385 49.6
QL02p051229 Quercus lobata HOM05D006028 ORTHO05D007784 4.7e-94 349.0 384 49.0
Cfa007919 Carpinus fangiana HOM05D006028 ORTHO05D007784 3.1e-93 346.3 387 48.8
PGR004G1556 Punica granatum HOM05D006028 ORTHO05D007784 4.0e-93 345.9 385 49.6
CsaV3_3G020280 Cucumis sativus L. HOM05D006028 ORTHO05D007784 5.2e-93 345.5 385 49.1
PSO017G5051 Papaver somniferum HOM05D006028 ORTHO05D007784 2.0e-92 343.6 386 48.4
Atru.chr1.1685 Acer truncatum HOM05D006028 ORTHO05D007784 2.6e-92 343.2 385 49.1
Ciclev10011993m.g Citrus clementina HOM05D006028 ORTHO05D007784 2.6e-92 343.2 385 48.3
TWI53G1478 Tripterygium wilfordii HOM05D006028 ORTHO05D007784 5.8e-92 342.0 385 48.8
Thecc.04G133100 Theobroma cacao HOM05D006028 ORTHO05D007784 7.5e-92 341.7 385 48.1
GSVIVG01031016001 Vitis vinifera HOM05D006028 ORTHO05D007784 7.5e-92 341.7 385 47.8
Rhsim10G0067700 Rhododendron simsii HOM05D006028 ORTHO05D007784 1.3e-91 340.9 385 48.6
Hma1.2p1_1109F.1_g258060 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 2.2e-91 340.1 385 48.1
PSO478G1932 Papaver somniferum HOM05D006028 ORTHO05D007784 2.2e-91 340.1 386 49.0
Potri.004G099000 Populus trichocarpa HOM05D006028 ORTHO05D007784 3.7e-91 339.3 388 48.5
CiPaw.03G061900 Carya illinoinensis HOM05D006028 ORTHO05D007784 8.3e-91 338.2 388 47.2
Haze_14158 Corylus avellana HOM05D006028 ORTHO05D007784 8.3e-91 338.2 395 47.8
Manes.02G069100 Manihot esculenta HOM05D006028 ORTHO05D007784 1.9e-90 337.0 385 46.2
MELO3C023751.2 Cucumis melo HOM05D006028 ORTHO05D007784 5.4e-90 335.5 386 48.4
HPP92_018993 Vanilla planifolia HOM05D006028 ORTHO05D007784 7.1e-90 335.1 388 49.5
ECA246G2307 Erigeron canadensis HOM05D006028 ORTHO05D007784 1.6e-89 334.0 387 46.5
Sopen02g030790 Solanum pennellii HOM05D006028 ORTHO05D007784 7.8e-89 331.6 387 46.3
PGSC0003DMG400026405 Solanum tuberosum HOM05D006028 ORTHO05D007784 6.6e-88 328.6 387 45.7
CAN.G625.27 Capsicum annuum HOM05D006028 ORTHO05D007784 8.6e-88 328.2 385 46.2
Actinidia15886 Actinidia chinensis HOM05D006028 ORTHO05D007784 3.3e-87 326.2 388 47.4
Cc07_g08770 Coffea canephora HOM05D006028 ORTHO05D007784 3.3e-87 326.2 387 48.6
Nitab4.5_0000912g0170 Nicotiana tabacum HOM05D006028 ORTHO05D007784 5.6e-87 325.5 387 46.0
RcHm_v2.0_Chr6g0273571 Rosa chinensis HOM05D006028 ORTHO05D007784 5.6e-87 325.5 379 46.7
Lj2A441T56 Lonicera japonica HOM05D006028 ORTHO05D007784 7.3e-87 325.1 385 46.2
FAN07G0954 Fragaria x ananassa HOM05D006028 ORTHO05D007784 2.8e-86 323.2 384 46.6
Nitab4.5_0004416g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 2.8e-86 323.2 387 45.7
FvH4_4g11350 Fragaria vesca HOM05D006028 ORTHO05D007784 3.6e-86 322.8 384 46.6
ATR1125G043 Amborella trichopoda HOM05D006028 ORTHO05D007784 4.7e-86 322.4 393 47.8
CSS0038458 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 6.2e-86 322.0 385 45.5
CSS0040274 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 6.2e-86 322.0 385 45.7
Glyma.02G226700 Glycine max HOM05D006028 ORTHO05D007784 1.1e-85 321.2 386 47.7
Phvul.008G261300 Phaseolus vulgaris HOM05D006028 ORTHO05D007784 1.1e-85 321.2 385 47.8
Migut.H00221 Erythranthe guttata HOM05D006028 ORTHO05D007784 2.4e-85 320.1 387 46.3
TPR.G23017 Trifolium pratense HOM05D006028 ORTHO05D007784 1.2e-84 317.8 385 47.3
ClCG05G012120 Citrullus lanatus HOM05D006028 ORTHO05D007784 2.0e-84 317.0 385 47.3
Duzib138G1322 Durio zibethinus HOM05D006028 ORTHO05D007784 3.4e-84 316.2 389 46.0
Glyma.14G193600 Glycine max HOM05D006028 ORTHO05D007784 3.4e-84 316.2 390 46.2
VMungo0647G1142 Vigna mungo HOM05D006028 ORTHO05D007784 3.4e-84 316.2 386 47.9
COL.COLO4_09340 Corchorus olitorius HOM05D006028 ORTHO05D007784 9.9e-84 314.7 389 47.0
AUR62023297 Chenopodium quinoa HOM05D006028 ORTHO05D007784 1.7e-83 313.9 389 47.3
Oeu008432.1 Olea europaea HOM05D006028 ORTHO05D007784 4.9e-83 312.4 387 44.4
Nn3g17886 Nelumbo nucifera HOM05D006028 ORTHO05D007784 1.1e-82 311.2 385 46.5
Lsat_1_v5_gn_3_79681 Lactuca sativa HOM05D006028 ORTHO05D007784 7.1e-82 308.5 385 43.6
Eucgr.F02499 Eucalyptus grandis HOM05D006028 ORTHO05D007784 1.2e-81 307.8 338 49.1
LjContig00155g0021894 Lotus japonicus HOM05D006028 ORTHO05D007784 1.2e-81 307.8 391 47.1
HanXRQChr12g0375811 Helianthus annuus HOM05D006028 ORTHO05D007784 2.7e-81 306.6 385 43.9
Hund13711 Selenicereus undatus HOM05D006028 ORTHO05D007784 7.8e-81 305.1 387 45.7
Medtr5g070860 Medicago truncatula HOM05D006028 ORTHO05D007784 2.3e-80 303.5 385 45.7
Lalb_Chr10g0103311 Lupinus albus HOM05D006028 ORTHO05D007784 3.0e-80 303.1 386 45.9
Ah.16g101740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 3.3e-79 299.7 386 44.8
MD00G1149900 Malus domestica HOM05D006028 ORTHO05D007784 5.6e-79 298.9 331 48.9
EL10Ac2g04560 Beta vulgaris HOM05D006028 ORTHO05D007784 7.3e-79 298.5 385 44.2
MSTRG.17981 Avicennia marina HOM05D006028 ORTHO05D007784 2.8e-78 296.6 391 44.2
AUR62009005 Chenopodium quinoa HOM05D006028 ORTHO05D007784 4.7e-78 295.8 407 43.7
Sabra04G0080900 Salix brachista HOM05D006028 ORTHO05D007784 4.7e-78 295.8 386 44.8
THA.LOC104820944 Tarenaya hassleriana HOM05D006028 ORTHO05D007784 1.8e-77 293.9 389 42.2
SalBow3G3202 Salvia bowleyana HOM05D006028 ORTHO05D007784 2.0e-76 290.4 406 42.4
Thhalv10022737m.g Eutrema salsugineum HOM05D006028 ORTHO05D007784 5.8e-76 288.9 387 42.6
Aa31LG8G15620 Aethionema arabicum HOM05D006028 ORTHO05D007784 1.7e-75 287.3 387 42.9
AT2G18410 Arabidopsis thaliana HOM05D006028 ORTHO05D007784 4.9e-75 285.8 388 42.8
SGA_v2.0_scaffold33G13509 Striga asiatica HOM05D006028 ORTHO05D007784 4.9e-75 285.8 387 43.7
A07p02330 Brassica napus HOM05D006028 ORTHO05D007784 1.4e-74 284.3 392 41.3
Carub.0003s3256 Capsella rubella HOM05D006028 ORTHO05D007784 1.4e-74 284.3 388 42.0
Dinv34819 Davidia involucrata HOM05D006028 ORTHO05D007784 2.4e-74 283.5 385 43.6
BcaC06g36407 Brassica carinata HOM05D006028 ORTHO05D007784 3.2e-74 283.1 388 42.0
BraA07t28024Z Brassica rapa HOM05D006028 ORTHO05D007784 3.2e-74 283.1 392 41.3
AL3G51690 Arabidopsis lyrata HOM05D006028 ORTHO05D007784 5.4e-74 282.3 388 42.0
arahy.Tifrunner.gnm1.ann1.QNRR2Z Arachis hypogaea HOM05D006028 ORTHO05D007784 5.4e-74 282.3 389 43.4
Sp3g31820 Schrenkiella parvula HOM05D006028 ORTHO05D007784 2.7e-73 280.0 387 41.3
SpUn0030_0010 Schrenkiella parvula HOM05D006028 ORTHO05D007784 2.7e-73 280.0 387 41.3
C07p04450 Brassica napus HOM05D006028 ORTHO05D007784 7.8e-73 278.5 392 42.1
BolC7t40839H Brassica oleracea HOM05D006028 ORTHO05D007784 2.3e-72 276.9 392 41.8
CARHR109010 Cardamine hirsuta HOM05D006028 ORTHO05D007784 8.7e-72 275.0 389 41.4
arahy.Tifrunner.gnm1.ann1.I9N3Y5 Arachis hypogaea HOM05D006028 ORTHO05D007784 1.1e-71 274.6 389 42.7
vmacro05550 Vaccinium macrocarpon HOM05D006028 ORTHO05D007784 2.5e-71 273.5 385 43.1
BcaB03g16641 Brassica carinata HOM05D006028 ORTHO05D007784 7.3e-71 271.9 412 40.0
CDE05G1052 Ceratophyllum demersum HOM05D006028 ORTHO05D007784 1.7e-67 260.8 385 41.6
Peaxi162Scf00394g00620 Petunia axillaris HOM05D006028 ORTHO05D007784 1.1e-66 258.1 385 41.8
Sed0006429 Sechium edule HOM05D006028 ORTHO05D007784 9.3e-66 255.0 293 48.5
Ca_05599_v3 Cicer arietinum L. HOM05D006028 ORTHO05D007784 2.9e-59 233.4 326 45.4
Pp3c5_13580 Physcomitrium patens HOM05D006028 ORTHO05D007784 7.1e-58 228.8 398 38.7
Mapoly0156s0014 Marchantia polymorpha HOM05D006028 ORTHO05D007784 3.4e-52 209.9 401 36.9
Haze_14159 Corylus avellana HOM05D006028 ORTHO05D007784 4.9e-51 206.1 229 51.5
Sc10g0001120 Simmondsia chinensis HOM05D006028 ORTHO05D007784 3.2e-50 203.4 262 43.1
Psat0s2922g0040 Pisum sativum HOM05D006028 ORTHO05D007784 1.2e-49 201.4 262 42.7
SMO351G0506 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 6.0e-49 199.1 391 35.5
SEGI_33346 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 4.1e-45 186.4 240 47.5
Hma1.2p1_1109F.1_g258050 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 8.5e-43 178.7 203 44.8
SMO009G0016 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 2.7e-41 173.7 386 33.2
QL02p051191 Quercus lobata HOM05D006028 ORTHO05D007784 2.8e-38 163.7 174 52.9
Hma1.2p1_1109F.1_g258070 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 4.8e-38 162.9 172 52.9
Solyc02g086100.4 Solanum lycopersicum HOM05D006028 ORTHO05D007784 3.1e-37 160.2 172 50.6
RcHm_v2.0_Chr1g0332721 Rosa chinensis HOM05D006028 ORTHO05D007784 2.2e-30 137.5 182 42.9
Potri.017G115566 Populus trichocarpa HOM05D006028 ORTHO05D007784 1.0e-27 128.6 163 41.1
SHI29124 Sapria himalayana HOM05D006028 ORTHO05D007784 9.4e-26 122.1 280 32.5
unitig_748.g7283 Utricularia gibba HOM05D006028 ORTHO05D007784 5.2e-24 116.3 390 28.5
AagrBONN_evm.TU.Sc2ySwM_368.1688 Anthoceros agrestis HOM05D006028 ORTHO05D007784 1.3e-19 101.7 147 44.9
Gohir.A09G249300 Gossypium hirsutum HOM05D006028 ORTHO05D007784 5.0e-19 99.8 191 34.0
Gohir.1Z049310 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.9e-18 97.8 191 33.5
Gorai.007G000700 Gossypium raimondii HOM05D006028 ORTHO05D007784 4.2e-18 96.7 176 36.4
FAN17G0046 Fragaria x ananassa HOM05D006028 ORTHO05D007784 3.6e-17 93.6 165 37.0
Sabra17G0095800 Salix brachista HOM05D006028 ORTHO05D007784 3.0e-16 90.5 173 34.7
AagrBONN_evm.TU.Sc2ySwM_368.1687 Anthoceros agrestis HOM05D006028 ORTHO05D007784 7.0e-13 79.3 171 32.2
Cpa.g.sc282.2 Carica papaya HOM05D006028 ORTHO05D007784 1.3e-11 75.1 163 31.9
Gohir.A06G000200 Gossypium hirsutum HOM05D006028 ORTHO05D007784 2.9e-11 73.9 96 40.6
Gohir.A12G000400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 2.9e-11 73.9 96 40.6
QL02p051195 Quercus lobata HOM05D006028 ORTHO05D007784 4.2e-10 70.1 75 40.0
Gohir.A01G231820 Gossypium hirsutum HOM05D006028 ORTHO05D007784 5.2e-08 63.2 81 44.4
SEGI_36511 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 5.7e-07 59.7 84 41.7
Nitab4.5_0014016g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 1.7e-06 58.2 85 31.8


User provided reference genes

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