Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0201100 Oryza sativa ssp. japonica HOM05D000144 ORTHO05D008375 1.3e-87 326.2 150 100.0
Zm00001eb007780 Zea mays HOM05D000144 ORTHO05D008375 2.9e-71 271.9 129 93.8
Prupe.6G220900 Prunus persica HOM05D000144 ORTHO05D008375 1.7e-68 262.7 129 89.1
RcHm_v2.0_Chr2g0108011 Rosa chinensis HOM05D000144 ORTHO05D008375 8.6e-68 260.4 129 86.8
Dinv26930 Davidia involucrata HOM05D000144 ORTHO05D008375 2.5e-67 258.8 129 87.6
Nn5g30589 Nelumbo nucifera HOM05D000144 ORTHO05D008375 9.5e-67 256.9 129 87.6
Oeu014248.1 Olea europaea HOM05D000144 ORTHO05D008375 9.5e-67 256.9 129 87.6
Ciclev10025214m.g Citrus clementina HOM05D000144 ORTHO05D008375 1.2e-66 256.5 129 87.6
SGA_v2.0_scaffold15G07454 Striga asiatica HOM05D000144 ORTHO05D008375 1.2e-66 256.5 129 86.8
GSVIVG01000108001 Vitis vinifera HOM05D000144 ORTHO05D008375 1.2e-66 256.5 129 86.8
THA.LOC104827618 Tarenaya hassleriana HOM05D000144 ORTHO05D008375 1.6e-66 256.1 129 86.8
arahy.Tifrunner.gnm1.ann1.ZP9CR3 Arachis hypogaea HOM05D000144 ORTHO05D008375 2.1e-66 255.8 129 88.4
Hma1.2p1_0852F.1_g228500 Hydrangea macrophylla HOM05D000144 ORTHO05D008375 2.1e-66 255.8 129 87.6
MD15G1307700 Malus domestica HOM05D000144 ORTHO05D008375 2.1e-66 255.8 129 87.6
TWI09G0055 Tripterygium wilfordii HOM05D000144 ORTHO05D008375 2.1e-66 255.8 129 86.0
Lj7A97T18 Lonicera japonica HOM05D000144 ORTHO05D008375 2.8e-66 255.4 129 86.8
TWI73G1111 Tripterygium wilfordii HOM05D000144 ORTHO05D008375 2.8e-66 255.4 129 83.7
Cfa004131 Carpinus fangiana HOM05D000144 ORTHO05D008375 3.6e-66 255.0 129 87.6
Haze_15284 Corylus avellana HOM05D000144 ORTHO05D008375 3.6e-66 255.0 129 87.6
Eucgr.I00705 Eucalyptus grandis HOM05D000144 ORTHO05D008375 4.7e-66 254.6 129 87.6
FvH4_1g17680 Fragaria vesca HOM05D000144 ORTHO05D008375 1.1e-65 253.4 129 86.0
FAN26G3316 Fragaria x ananassa HOM05D000144 ORTHO05D008375 1.1e-65 253.4 129 86.0
FAN28G1584 Fragaria x ananassa HOM05D000144 ORTHO05D008375 1.1e-65 253.4 129 86.0
CiPaw.01G004600 Carya illinoinensis HOM05D000144 ORTHO05D008375 1.4e-65 253.1 129 86.8
ClCG01G017550 Citrullus lanatus HOM05D000144 ORTHO05D008375 1.4e-65 253.1 129 85.3
Atru.chr3.1009 Acer truncatum HOM05D000144 ORTHO05D008375 2.3e-65 252.3 129 85.3
arahy.Tifrunner.gnm1.ann1.L6JH5D Arachis hypogaea HOM05D000144 ORTHO05D008375 2.3e-65 252.3 129 87.6
Thhalv10003864m.g Eutrema salsugineum HOM05D000144 ORTHO05D008375 2.3e-65 252.3 129 86.0
PGR004G0927 Punica granatum HOM05D000144 ORTHO05D008375 2.3e-65 252.3 129 86.8
HPP92_024498 Vanilla planifolia HOM05D000144 ORTHO05D008375 2.3e-65 252.3 129 86.8
A06p32890 Brassica napus HOM05D000144 ORTHO05D008375 3.1e-65 251.9 129 86.0
BolC3t18222H Brassica oleracea HOM05D000144 ORTHO05D008375 3.1e-65 251.9 129 86.0
BraA06t26220Z Brassica rapa HOM05D000144 ORTHO05D008375 3.1e-65 251.9 129 86.0
MELO3C007631.2 Cucumis melo HOM05D000144 ORTHO05D008375 3.1e-65 251.9 129 85.3
CsaV3_6G044090 Cucumis sativus L. HOM05D000144 ORTHO05D008375 3.1e-65 251.9 129 85.3
FAN19G2025 Fragaria x ananassa HOM05D000144 ORTHO05D008375 3.1e-65 251.9 129 85.3
BcaB02g09915 Brassica carinata HOM05D000144 ORTHO05D008375 4.0e-65 251.5 129 86.0
CAN.G1075.36 Capsicum annuum HOM05D000144 ORTHO05D008375 5.2e-65 251.1 129 83.7
Cc07_g07080 Coffea canephora HOM05D000144 ORTHO05D008375 6.8e-65 250.8 129 83.7
C03p59580 Brassica napus HOM05D000144 ORTHO05D008375 8.9e-65 250.4 129 85.3
Ca_24694_v3 Cicer arietinum L. HOM05D000144 ORTHO05D008375 8.9e-65 250.4 129 86.0
Thecc.01G072500 Theobroma cacao HOM05D000144 ORTHO05D008375 8.9e-65 250.4 129 83.7
VMungo1215G0773 Vigna mungo HOM05D000144 ORTHO05D008375 8.9e-65 250.4 129 85.3
Lalb_Chr16g0378861 Lupinus albus HOM05D000144 ORTHO05D008375 1.2e-64 250.0 129 86.0
Nitab4.5_0000142g0040 Nicotiana tabacum HOM05D000144 ORTHO05D008375 1.2e-64 250.0 129 83.7
vmacro05409 Vaccinium macrocarpon HOM05D000144 ORTHO05D008375 1.2e-64 250.0 130 86.2
MSTRG.23672 Avicennia marina HOM05D000144 ORTHO05D008375 1.5e-64 249.6 129 84.5
Solyc02g092380.4 Solanum lycopersicum HOM05D000144 ORTHO05D008375 1.5e-64 249.6 129 82.9
Sopen02g036930 Solanum pennellii HOM05D000144 ORTHO05D008375 1.5e-64 249.6 129 82.9
AL8G43770 Arabidopsis lyrata HOM05D000144 ORTHO05D008375 2.0e-64 249.2 129 84.5
AT5G67530 Arabidopsis thaliana HOM05D000144 ORTHO05D008375 2.0e-64 249.2 129 84.5
CSS0036973 Camellia sinensis var. sinensis HOM05D000144 ORTHO05D008375 2.0e-64 249.2 129 85.3
CDE07G1536 Ceratophyllum demersum HOM05D000144 ORTHO05D008375 2.0e-64 249.2 129 84.5
Gohir.D12G075500 Gossypium hirsutum HOM05D000144 ORTHO05D008375 2.0e-64 249.2 129 85.3
Gorai.008G083600 Gossypium raimondii HOM05D000144 ORTHO05D008375 2.0e-64 249.2 129 85.3
Sp2g29120 Schrenkiella parvula HOM05D000144 ORTHO05D008375 2.0e-64 249.2 129 85.3
Gohir.A12G077300 Gossypium hirsutum HOM05D000144 ORTHO05D008375 2.6e-64 248.8 129 84.5
SalBow3G3765 Salvia bowleyana HOM05D000144 ORTHO05D008375 2.6e-64 248.8 129 84.5
HanXRQChr15g0472631 Helianthus annuus HOM05D000144 ORTHO05D008375 3.4e-64 248.4 129 85.3
MD02G1185800 Malus domestica HOM05D000144 ORTHO05D008375 3.4e-64 248.4 129 85.3
Carub.0008s2694 Capsella rubella HOM05D000144 ORTHO05D008375 4.4e-64 248.1 129 84.5
COL.COLO4_11575 Corchorus olitorius HOM05D000144 ORTHO05D008375 5.8e-64 247.7 129 84.5
Potri.005G148900 Populus trichocarpa HOM05D000144 ORTHO05D008375 5.8e-64 247.7 129 84.5
TAR381G1456 Trochodendron aralioides HOM05D000144 ORTHO05D008375 5.8e-64 247.7 129 83.7
Sed0012214 Sechium edule HOM05D000144 ORTHO05D008375 7.5e-64 247.3 129 82.9
PGSC0003DMG400021445 Solanum tuberosum HOM05D000144 ORTHO05D008375 7.5e-64 247.3 129 82.2
Lsat_1_v5_gn_3_86200 Lactuca sativa HOM05D000144 ORTHO05D008375 9.9e-64 246.9 129 82.9
Nitab4.5_0002119g0110 Nicotiana tabacum HOM05D000144 ORTHO05D008375 9.9e-64 246.9 129 82.2
CARHR280050 Cardamine hirsuta HOM05D000144 ORTHO05D008375 1.3e-63 246.5 129 82.2
ECA246G5277 Erigeron canadensis HOM05D000144 ORTHO05D008375 1.7e-63 246.1 129 83.7
Glyma.01G194100 Glycine max HOM05D000144 ORTHO05D008375 2.2e-63 245.7 129 83.7
Lj2g0027160 Lotus japonicus HOM05D000144 ORTHO05D008375 2.2e-63 245.7 129 84.5
PSO541G5893 Papaver somniferum HOM05D000144 ORTHO05D008375 2.9e-63 245.4 129 86.0
PSO675G3797 Papaver somniferum HOM05D000144 ORTHO05D008375 2.9e-63 245.4 129 86.0
Phvul.002G010800 Phaseolus vulgaris HOM05D000144 ORTHO05D008375 3.7e-63 245.0 129 83.7
Glyma.11G047800 Glycine max HOM05D000144 ORTHO05D008375 4.9e-63 244.6 129 83.7
Aa31LG1G16080 Aethionema arabicum HOM05D000144 ORTHO05D008375 8.3e-63 243.8 129 84.5
Medtr5g015500 Medicago truncatula HOM05D000144 ORTHO05D008375 1.1e-62 243.4 129 83.7
Sabra05G0118600 Salix brachista HOM05D000144 ORTHO05D008375 1.4e-62 243.0 129 82.9
Actinidia36432 Actinidia chinensis HOM05D000144 ORTHO05D008375 1.9e-62 242.7 129 83.7
Hund16400 Selenicereus undatus HOM05D000144 ORTHO05D008375 1.9e-62 242.7 129 82.9
Manes.12G114000 Manihot esculenta HOM05D000144 ORTHO05D008375 4.1e-62 241.5 129 85.3
Aqoxy6G02612 Aquilegia oxysepala HOM05D000144 ORTHO05D008375 5.4e-62 241.1 129 82.9
Psat2g171520 Pisum sativum HOM05D000144 ORTHO05D008375 5.4e-62 241.1 129 83.7
EL10Ac6g15620 Beta vulgaris HOM05D000144 ORTHO05D008375 7.1e-62 240.7 129 83.7
Ah.03g140560 Amaranthus hybridus HOM05D000144 ORTHO05D008375 2.1e-61 239.2 129 82.9
TPR.G34857 Trifolium pratense HOM05D000144 ORTHO05D008375 2.1e-61 239.2 129 82.9
Cpa.g.sc6.18 Carica papaya HOM05D000144 ORTHO05D008375 2.7e-61 238.8 133 79.7
Migut.H00349 Erythranthe guttata HOM05D000144 ORTHO05D008375 3.5e-61 238.4 129 81.4
Mapoly0005s0265 Marchantia polymorpha HOM05D000144 ORTHO05D008375 5.1e-60 234.6 129 79.1
unitig_699.g19438 Utricularia gibba HOM05D000144 ORTHO05D008375 5.1e-60 234.6 137 77.4
ATR1153G005 Amborella trichopoda HOM05D000144 ORTHO05D008375 3.3e-59 231.9 129 79.8
AagrBONN_evm.TU.Sc2ySwM_368.588 Anthoceros agrestis HOM05D000144 ORTHO05D008375 3.3e-59 231.9 129 78.3
EL10As2g23225 Beta vulgaris HOM05D000144 ORTHO05D008375 8.1e-58 227.3 132 80.3
Oeu013322.1 Olea europaea HOM05D000144 ORTHO05D008375 2.4e-57 225.7 192 57.8
SMO356G0468 Selaginella moellendorffii HOM05D000144 ORTHO05D008375 3.4e-56 221.9 129 73.6
Pp3c18_21660 Physcomitrium patens HOM05D000144 ORTHO05D008375 9.9e-56 220.3 129 73.6
Actinidia11983 Actinidia chinensis HOM05D000144 ORTHO05D008375 2.5e-51 205.7 121 77.7
Cre10.g457000 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D008375 1.6e-50 203.0 129 67.4
MCO14G312 Micromonas commoda HOM05D000144 ORTHO05D008375 1.6e-50 203.0 129 68.2
Rhsim10G0099600 Rhododendron simsii HOM05D000144 ORTHO05D008375 1.6e-50 203.0 129 73.6
CBR_g31965 Chara braunii HOM05D000144 ORTHO05D008375 4.7e-50 201.4 119 70.6
Peaxi162Scf00548g00659 Petunia axillaris HOM05D000144 ORTHO05D008375 3.1e-49 198.7 129 70.5
GSVIVG01000117001 Vitis vinifera HOM05D000144 ORTHO05D008375 2.0e-48 196.1 101 84.2
AUR62040239 Chenopodium quinoa HOM05D000144 ORTHO05D008375 3.4e-48 195.3 129 70.5
Hma1.2p1_0852F.1_g228490 Hydrangea macrophylla HOM05D000144 ORTHO05D008375 2.9e-47 192.2 101 82.2
FAN23G2810 Fragaria x ananassa HOM05D000144 ORTHO05D008375 1.1e-46 190.3 129 69.0
Sc16g0002880 Simmondsia chinensis HOM05D000144 ORTHO05D008375 2.3e-36 156.0 92 75.0
DCAR_025800 Daucus carota HOM05D000144 ORTHO05D008375 1.8e-33 146.4 174 47.1
PRCOL_00004771 Prasinoderma coloniale HOM05D000144 ORTHO05D008375 1.7e-23 113.2 108 45.4
SEGI_30666 Sequoiadendron giganteum HOM05D000144 ORTHO05D008375 1.1e-22 110.5 64 73.4
AUR62004008 Chenopodium quinoa HOM05D000144 ORTHO05D008375 2.5e-22 109.4 133 49.6
MBI12_g43206_MAGBIO Magnolia biondii HOM05D000144 ORTHO05D008375 2.7e-21 105.9 66 68.2
MBI12_g04926_MAGBIO Magnolia biondii HOM05D000144 ORTHO05D008375 6.0e-21 104.8 63 69.8
Lj3g0021449 Lotus japonicus HOM05D000144 ORTHO05D008375 1.9e-19 99.8 60 71.7
Lsat_1_v5_gn_8_75860 Lactuca sativa HOM05D000144 ORTHO05D008375 3.2e-14 82.4 42 81.0
Hma1.2p1_0852F.1_g228510 Hydrangea macrophylla HOM05D000144 ORTHO05D008375 6.3e-10 68.2 30 100.0


User provided reference genes

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