Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 1.4e-119 433.0 221 100.0
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 9.6e-92 340.5 220 76.8
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 1.4e-77 293.5 214 68.7
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 1.4e-77 293.5 214 68.7
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 2.0e-76 289.7 214 68.7
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 2.6e-76 289.3 215 67.0
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 2.6e-76 289.3 213 67.1
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 3.3e-76 288.9 214 67.8
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 7.4e-76 287.7 215 67.0
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 9.7e-76 287.3 214 65.4
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 9.7e-76 287.3 214 66.8
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 3.7e-75 285.4 215 67.9
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 3.7e-75 285.4 215 65.6
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 3.7e-75 285.4 215 65.6
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 6.3e-75 284.6 214 64.5
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 6.3e-75 284.6 214 65.0
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 8.2e-75 284.3 215 65.6
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 8.2e-75 284.3 215 65.6
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 8.2e-75 284.3 215 67.9
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 1.1e-74 283.9 215 66.0
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.4e-74 283.5 214 65.4
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 1.8e-74 283.1 215 67.0
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 1.8e-74 283.1 214 64.5
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 2.4e-74 282.7 214 67.3
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 2.4e-74 282.7 215 67.4
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 2.4e-74 282.7 215 67.0
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 3.1e-74 282.3 214 65.4
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 4.1e-74 282.0 215 67.4
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 5.3e-74 281.6 215 66.5
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 5.3e-74 281.6 213 66.7
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 9.1e-74 280.8 214 67.3
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 1.2e-73 280.4 215 66.0
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 1.2e-73 280.4 215 67.4
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 1.2e-73 280.4 215 67.4
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 1.5e-73 280.0 215 67.0
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 1.5e-73 280.0 215 67.0
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 2.0e-73 279.6 215 66.0
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 2.0e-73 279.6 214 64.0
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 4.5e-73 278.5 214 65.4
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 1.0e-72 277.3 214 63.1
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 1.3e-72 276.9 214 64.0
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 1.7e-72 276.6 213 65.3
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 2.2e-72 276.2 213 63.8
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.2e-72 276.2 218 63.3
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 2.2e-72 276.2 214 65.0
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 2.9e-72 275.8 213 63.8
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 2.9e-72 275.8 213 64.3
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.9e-72 275.8 218 62.8
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 2.9e-72 275.8 214 64.5
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 5.0e-72 275.0 213 63.4
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 5.0e-72 275.0 213 63.8
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 6.5e-72 274.6 213 63.8
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 6.5e-72 274.6 213 65.3
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 1.9e-71 273.1 213 64.3
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 2.5e-71 272.7 217 65.0
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 3.2e-71 272.3 214 63.1
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 7.2e-71 271.2 213 62.9
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 7.2e-71 271.2 214 61.2
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 7.2e-71 271.2 214 61.2
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 7.2e-71 271.2 218 63.3
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 7.2e-71 271.2 218 63.3
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 9.4e-71 270.8 215 62.8
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 1.6e-70 270.0 213 62.9
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 1.6e-70 270.0 214 63.6
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 2.1e-70 269.6 214 65.0
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 2.1e-70 269.6 213 63.8
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 2.7e-70 269.2 214 64.5
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 3.6e-70 268.9 218 62.4
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 3.6e-70 268.9 178 72.5
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 3.6e-70 268.9 213 62.0
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 6.1e-70 268.1 179 71.5
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 6.1e-70 268.1 214 63.6
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.4e-69 266.9 213 63.4
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 1.8e-69 266.5 214 64.0
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 2.3e-69 266.2 218 64.2
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 3.0e-69 265.8 213 62.0
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 5.2e-69 265.0 218 61.5
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 6.7e-69 264.6 178 71.9
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 9.7e-68 260.8 214 61.7
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 1.3e-67 260.4 218 58.7
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 1.1e-66 257.3 182 67.0
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 2.6e-65 252.7 179 66.5
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 2.1e-62 243.0 193 63.2
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 2.2e-59 233.0 216 57.4
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 1.4e-58 230.3 222 54.5
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 5.9e-57 224.9 178 61.2
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 6.5e-56 221.5 178 59.0
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 1.0e-53 214.2 215 54.0
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 2.3e-53 213.0 215 54.0
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 1.3e-51 207.2 168 67.3
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 3.7e-51 205.7 214 51.9
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 1.1e-50 204.1 213 53.5
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 5.7e-44 181.8 104 80.8
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 2.2e-43 179.9 105 77.1
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 1.1e-42 177.6 178 50.0
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 3.1e-42 176.0 111 74.8
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 8.6e-40 167.9 148 54.1
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 3.2e-34 149.4 151 47.0
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 3.5e-33 146.0 212 40.1
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 6.2e-30 135.2 153 43.1
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 8.9e-21 104.8 109 50.5
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 3.4e-20 102.8 52 90.4
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 8.3e-19 98.2 110 47.3
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.9e-11 73.2 87 43.7
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 5.4e-10 68.9 171 29.2
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 2.8e-06 56.6 142 29.6


User provided reference genes

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