Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 1.0e-266 922.9 486 100.0
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 4.0e-215 751.5 484 82.0
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 1.5e-161 573.5 459 66.2
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 1.5e-161 573.5 480 63.1
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 1.4e-159 567.0 457 64.3
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 2.0e-158 563.1 457 63.9
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 5.9e-158 561.6 457 64.1
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 7.6e-158 561.2 455 64.4
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 7.6e-158 561.2 459 64.7
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 1.3e-157 560.5 466 64.4
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.3e-157 560.5 458 64.8
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 2.9e-157 559.3 457 63.5
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 6.5e-157 558.1 455 63.3
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 2.5e-156 556.2 468 62.0
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 3.2e-156 555.8 458 63.5
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 1.6e-155 553.5 458 63.5
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 4.6e-155 552.0 463 62.2
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 7.9e-155 551.2 445 64.5
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 1.3e-154 550.4 458 62.7
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 1.8e-154 550.1 458 62.2
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 3.0e-154 549.3 455 62.6
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 6.7e-154 548.1 471 62.8
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 1.9e-153 546.6 458 62.7
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 2.5e-153 546.2 459 63.8
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 5.7e-153 545.0 458 64.2
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 7.4e-153 544.7 454 62.6
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 9.7e-153 544.3 471 62.6
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 3.7e-152 542.3 456 63.2
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 4.8e-152 542.0 455 61.5
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 8.2e-152 541.2 479 60.1
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 1.1e-151 540.8 464 61.2
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 2.4e-151 539.7 484 59.1
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.4e-151 539.7 458 62.9
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.4e-151 539.7 458 62.7
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 3.1e-151 539.3 461 62.3
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 4.1e-151 538.9 459 63.6
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 6.9e-151 538.1 471 60.3
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 3.4e-150 535.8 458 62.2
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 4.5e-150 535.4 463 61.6
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 4.5e-150 535.4 460 60.9
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 1.3e-149 533.9 456 61.4
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 1.7e-149 533.5 450 62.2
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 2.9e-149 532.7 468 60.3
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 1.9e-148 530.0 468 60.0
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 2.5e-148 529.6 469 60.3
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 4.2e-148 528.9 427 64.9
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 5.5e-148 528.5 461 61.0
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 7.2e-148 528.1 476 59.2
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 9.4e-148 527.7 480 59.4
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 2.1e-147 526.6 461 62.3
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 3.6e-147 525.8 484 59.3
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 6.1e-147 525.0 458 61.1
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 7.9e-147 524.6 455 61.5
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 1.0e-146 524.2 455 60.4
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 1.0e-146 524.2 456 61.2
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.4e-146 523.9 508 57.7
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 1.4e-146 523.9 457 60.0
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 1.8e-146 523.5 427 64.4
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 5.1e-146 521.9 477 58.9
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 8.8e-146 521.2 480 60.4
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 8.8e-146 521.2 457 59.5
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 4.4e-145 518.8 457 59.7
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 9.7e-145 517.7 458 61.4
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 9.7e-145 517.7 458 61.6
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 2.8e-144 516.2 468 57.5
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 2.8e-144 516.2 477 58.3
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 8.2e-144 514.6 459 59.3
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 1.1e-143 514.2 461 60.7
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 1.1e-143 514.2 463 59.2
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.4e-143 513.8 457 59.7
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 1.8e-143 513.5 457 58.6
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 3.1e-143 512.7 457 58.6
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 4.1e-143 512.3 455 59.3
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 9.1e-143 511.1 462 59.5
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 9.1e-143 511.1 477 57.7
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 9.1e-143 511.1 457 59.7
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 2.6e-142 509.6 457 59.3
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 3.6e-139 499.2 457 58.4
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 3.6e-139 499.2 465 58.7
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 1.8e-138 496.9 455 58.5
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 2.0e-137 493.4 471 57.1
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 6.3e-136 488.4 473 56.9
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 8.2e-136 488.0 459 57.7
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.8e-135 486.9 485 55.7
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 3.1e-135 486.1 466 57.1
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 3.1e-135 486.1 476 57.4
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 5.3e-135 485.3 475 55.6
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 7.0e-135 485.0 485 56.3
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 1.2e-134 484.2 475 56.0
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 5.9e-134 481.9 477 56.0
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 5.9e-134 481.9 467 55.9
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 7.7e-134 481.5 488 54.7
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 2.2e-133 479.9 452 57.7
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 8.5e-133 478.0 474 54.6
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 1.1e-132 477.6 467 55.7
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 5.5e-132 475.3 461 57.5
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 2.7e-131 473.0 465 55.5
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 1.0e-130 471.1 458 55.0
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 1.4e-130 470.7 489 55.2
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 1.2e-129 467.6 485 51.8
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 1.2e-129 467.6 485 51.8
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 2.0e-129 466.8 448 57.1
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 2.6e-129 466.5 484 56.0
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 2.6e-129 466.5 484 56.0
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 2.6e-129 466.5 484 56.0
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 4.4e-129 465.7 460 56.3
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 1.3e-128 464.2 460 56.1
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.4e-127 460.7 482 54.4
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 3.1e-127 459.5 408 58.3
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 3.1e-127 459.5 486 53.9
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 7.0e-127 458.4 456 55.3
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 3.5e-126 456.1 466 54.5
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 4.5e-126 455.7 464 54.5
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.7e-125 453.8 464 54.7
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 8.5e-125 451.4 450 54.9
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 7.2e-124 448.4 463 53.1
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 4.4e-121 439.1 461 54.2
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 1.4e-119 434.1 412 57.5
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 5.4e-119 432.2 450 52.7
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 3.2e-116 422.9 449 51.9
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.8e-114 417.2 466 51.9
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 2.4e-111 406.8 449 51.0
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 2.0e-110 403.7 458 50.0
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 4.5e-110 402.5 458 50.0
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 6.1e-107 392.1 455 50.3
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 4.4e-105 386.0 482 47.1
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 3.0e-101 373.2 459 46.6
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 2.5e-100 370.2 460 46.5
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 6.4e-96 355.5 372 50.5
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 9.2e-95 351.7 454 46.5
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 9.5e-92 341.7 296 60.5
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.1e-90 338.2 452 43.8
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 8.9e-90 335.1 426 46.2
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.4e-87 327.8 315 57.8
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.4e-87 327.8 315 57.8
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 3.5e-86 323.2 315 57.8
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 2.3e-85 320.5 407 47.7
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.2e-78 298.1 258 60.9
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 6.2e-75 285.8 235 65.1
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 6.0e-70 269.2 197 70.1
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 3.9e-61 240.0 317 47.3
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 3.4e-57 226.9 358 37.7
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 1.1e-55 221.9 480 33.8
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 4.2e-55 219.9 232 51.7
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 2.5e-47 194.1 182 56.6
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 4.6e-46 189.9 144 63.9
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 4.6e-46 189.9 144 63.9
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 1.1e-42 178.7 425 30.8
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 8.2e-35 152.5 148 53.4
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 7.4e-20 102.8 86 60.5
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 5.3e-18 96.7 94 59.6
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 8.5e-08 62.8 54 55.6


User provided reference genes

Program Settings