Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0750100 Oryza sativa ssp. japonica HOM05D003160 ORTHO05D005967 7.4e-47 190.3 101 100.0
Thecc.07G148800 Theobroma cacao HOM05D003160 ORTHO05D005967 3.4e-28 128.3 99 65.7
Lj4g0003489 Lotus japonicus HOM05D003160 ORTHO05D005967 7.7e-28 127.1 99 62.6
SGA_v2.0_scaffold315G48377 Striga asiatica HOM05D003160 ORTHO05D005967 1.3e-27 126.3 99 64.6
COL.COLO4_17389 Corchorus olitorius HOM05D003160 ORTHO05D005967 1.7e-27 125.9 99 64.6
Migut.C00219 Erythranthe guttata HOM05D003160 ORTHO05D005967 1.7e-27 125.9 96 65.6
Gohir.A01G040600 Gossypium hirsutum HOM05D003160 ORTHO05D005967 1.7e-27 125.9 99 64.6
Gohir.D01G028200 Gossypium hirsutum HOM05D003160 ORTHO05D005967 1.7e-27 125.9 99 64.6
Gorai.002G037600 Gossypium raimondii HOM05D003160 ORTHO05D005967 1.7e-27 125.9 99 64.6
Prupe.8G048900 Prunus persica HOM05D003160 ORTHO05D005967 1.7e-27 125.9 98 63.3
MD17G1003000 Malus domestica HOM05D003160 ORTHO05D005967 2.2e-27 125.6 99 61.6
Phvul.003G211100 Phaseolus vulgaris HOM05D003160 ORTHO05D005967 2.9e-27 125.2 101 61.4
Sc04g0010380 Simmondsia chinensis HOM05D003160 ORTHO05D005967 2.9e-27 125.2 98 64.3
VMungo1215G3266 Vigna mungo HOM05D003160 ORTHO05D005967 2.9e-27 125.2 101 62.4
Atru.chr13.1881 Acer truncatum HOM05D003160 ORTHO05D005967 3.8e-27 124.8 98 65.3
Sabra19G0097900 Salix brachista HOM05D003160 ORTHO05D005967 3.8e-27 124.8 98 64.3
Sabra19G0101400 Salix brachista HOM05D003160 ORTHO05D005967 3.8e-27 124.8 98 64.3
CSS0043683 Camellia sinensis var. sinensis HOM05D003160 ORTHO05D005967 5.0e-27 124.4 99 64.6
Ciclev10002351m.g Citrus clementina HOM05D003160 ORTHO05D005967 6.5e-27 124.0 98 64.3
Duzib213G0606 Durio zibethinus HOM05D003160 ORTHO05D005967 6.5e-27 124.0 96 64.6
Hma1.2p1_0276F.1_g111290 Hydrangea macrophylla HOM05D003160 ORTHO05D005967 8.5e-27 123.6 98 61.2
Lsat_1_v5_gn_6_101941 Lactuca sativa HOM05D003160 ORTHO05D005967 8.5e-27 123.6 99 64.6
Lj4P109T42 Lonicera japonica HOM05D003160 ORTHO05D005967 8.5e-27 123.6 98 63.3
PGR102G2401 Punica granatum HOM05D003160 ORTHO05D005967 8.5e-27 123.6 98 63.3
RcHm_v2.0_Chr6g0272941 Rosa chinensis HOM05D003160 ORTHO05D005967 8.5e-27 123.6 98 62.2
THA.LOC104816203 Tarenaya hassleriana HOM05D003160 ORTHO05D005967 8.5e-27 123.6 98 62.2
TWI34G1175 Tripterygium wilfordii HOM05D003160 ORTHO05D005967 8.5e-27 123.6 91 65.9
Aa31LG9G14960 Aethionema arabicum HOM05D003160 ORTHO05D005967 1.1e-26 123.2 98 62.2
Ah.02g131050 Amaranthus hybridus HOM05D003160 ORTHO05D005967 1.1e-26 123.2 98 64.3
arahy.Tifrunner.gnm1.ann1.2I1I1C Arachis hypogaea HOM05D003160 ORTHO05D005967 1.1e-26 123.2 98 60.2
Cpa.g.sc66.121 Carica papaya HOM05D003160 ORTHO05D005967 1.1e-26 123.2 98 62.2
MD10G1043200 Malus domestica HOM05D003160 ORTHO05D005967 1.1e-26 123.2 98 61.2
Medtr4g103330 Medicago truncatula HOM05D003160 ORTHO05D005967 1.1e-26 123.2 99 61.6
unitig_37.g13119 Utricularia gibba HOM05D003160 ORTHO05D005967 1.1e-26 123.2 96 63.5
Cfa018797 Carpinus fangiana HOM05D003160 ORTHO05D005967 1.4e-26 122.9 101 62.4
AUR62028884 Chenopodium quinoa HOM05D003160 ORTHO05D005967 1.4e-26 122.9 95 62.1
Cc10_g06080 Coffea canephora HOM05D003160 ORTHO05D005967 1.4e-26 122.9 101 62.4
Potri.013G117000 Populus trichocarpa HOM05D003160 ORTHO05D005967 1.4e-26 122.9 95 65.3
TWI34G0437 Tripterygium wilfordii HOM05D003160 ORTHO05D005967 1.4e-26 122.9 96 62.5
TAR625G0523 Trochodendron aralioides HOM05D003160 ORTHO05D005967 1.4e-26 122.9 96 63.5
QL10p002938 Quercus lobata HOM05D003160 ORTHO05D005967 1.9e-26 122.5 97 63.9
SalBow7G2604 Salvia bowleyana HOM05D003160 ORTHO05D005967 1.9e-26 122.5 99 63.6
Haze_07136 Corylus avellana HOM05D003160 ORTHO05D005967 2.5e-26 122.1 101 62.4
Manes.02G188100 Manihot esculenta HOM05D003160 ORTHO05D005967 2.5e-26 122.1 93 64.5
Nn2g14435 Nelumbo nucifera HOM05D003160 ORTHO05D005967 2.5e-26 122.1 95 65.3
Nitab4.5_0006745g0030 Nicotiana tabacum HOM05D003160 ORTHO05D005967 2.5e-26 122.1 99 62.6
Aqoxy6G00501 Aquilegia oxysepala HOM05D003160 ORTHO05D005967 3.2e-26 121.7 98 63.3
AL6G43270 Arabidopsis lyrata HOM05D003160 ORTHO05D005967 3.2e-26 121.7 98 63.3
MSTRG.22135 Avicennia marina HOM05D003160 ORTHO05D005967 3.2e-26 121.7 96 63.5
AUR62005671 Chenopodium quinoa HOM05D003160 ORTHO05D005967 3.2e-26 121.7 95 61.1
FvH4_2g12490 Fragaria vesca HOM05D003160 ORTHO05D005967 3.2e-26 121.7 98 60.2
FAN15G0653 Fragaria x ananassa HOM05D003160 ORTHO05D005967 3.2e-26 121.7 98 60.2
FAN24G0582 Fragaria x ananassa HOM05D003160 ORTHO05D005967 3.2e-26 121.7 98 60.2
FAN27G2017 Fragaria x ananassa HOM05D003160 ORTHO05D005967 3.2e-26 121.7 98 60.2
Potri.019G087300 Populus trichocarpa HOM05D003160 ORTHO05D005967 3.2e-26 121.7 95 63.2
Solyc12g056830.1 Solanum lycopersicum HOM05D003160 ORTHO05D005967 3.2e-26 121.7 98 64.3
Sopen12g029510 Solanum pennellii HOM05D003160 ORTHO05D005967 3.2e-26 121.7 98 64.3
CAN.G47.5 Capsicum annuum HOM05D003160 ORTHO05D005967 4.2e-26 121.3 98 64.3
CARHR260570 Cardamine hirsuta HOM05D003160 ORTHO05D005967 4.2e-26 121.3 98 62.2
ClCG08G002530 Citrullus lanatus HOM05D003160 ORTHO05D005967 4.2e-26 121.3 101 58.4
MELO3C025005.2 Cucumis melo HOM05D003160 ORTHO05D005967 4.2e-26 121.3 101 58.4
CsaV3_6G002740 Cucumis sativus L. HOM05D003160 ORTHO05D005967 4.2e-26 121.3 101 58.4
Nitab4.5_0000425g0240 Nicotiana tabacum HOM05D003160 ORTHO05D005967 4.2e-26 121.3 99 62.6
THA.LOC104806778 Tarenaya hassleriana HOM05D003160 ORTHO05D005967 4.2e-26 121.3 98 60.2
Eucgr.F04149 Eucalyptus grandis HOM05D003160 ORTHO05D005967 5.5e-26 120.9 98 63.3
Sed0000690 Sechium edule HOM05D003160 ORTHO05D005967 5.5e-26 120.9 99 60.6
TAR381G0896 Trochodendron aralioides HOM05D003160 ORTHO05D005967 5.5e-26 120.9 98 63.3
MSTRG.24477 Avicennia marina HOM05D003160 ORTHO05D005967 7.2e-26 120.6 99 62.6
Lj4A710G52 Lonicera japonica HOM05D003160 ORTHO05D005967 7.2e-26 120.6 96 63.5
AT4G09650 Arabidopsis thaliana HOM05D003160 ORTHO05D005967 9.4e-26 120.2 98 62.2
CiPaw.12G043000 Carya illinoinensis HOM05D003160 ORTHO05D005967 9.4e-26 120.2 101 57.4
Thhalv10028838m.g Eutrema salsugineum HOM05D003160 ORTHO05D005967 9.4e-26 120.2 98 61.2
CDE02G4562 Ceratophyllum demersum HOM05D003160 ORTHO05D005967 1.2e-25 119.8 96 59.4
Sp6g07950 Schrenkiella parvula HOM05D003160 ORTHO05D005967 1.2e-25 119.8 98 61.2
PGSC0003DMG400016959 Solanum tuberosum HOM05D003160 ORTHO05D005967 1.2e-25 119.8 98 63.3
EL10Ac6g13555 Beta vulgaris HOM05D003160 ORTHO05D005967 1.6e-25 119.4 95 62.1
Ca_26100_v3 Cicer arietinum L. HOM05D003160 ORTHO05D005967 1.6e-25 119.4 101 59.4
Glyma.05G048000 Glycine max HOM05D003160 ORTHO05D005967 1.6e-25 119.4 101 61.4
CANSAT25G2288 Cannabis sativa HOM05D003160 ORTHO05D005967 2.1e-25 119.0 101 56.4
FAN26G1927 Fragaria x ananassa HOM05D003160 ORTHO05D005967 2.1e-25 119.0 98 59.2
Glyma.17G130100 Glycine max HOM05D003160 ORTHO05D005967 2.1e-25 119.0 101 61.4
TPR.G19210 Trifolium pratense HOM05D003160 ORTHO05D005967 2.1e-25 119.0 101 58.4
vmacro04777 Vaccinium macrocarpon HOM05D003160 ORTHO05D005967 2.1e-25 119.0 88 67.0
Aa31LG7G6640 Aethionema arabicum HOM05D003160 ORTHO05D005967 2.7e-25 118.6 96 60.4
BcaB01g02780 Brassica carinata HOM05D003160 ORTHO05D005967 2.7e-25 118.6 98 60.2
A09p29470 Brassica napus HOM05D003160 ORTHO05D005967 2.7e-25 118.6 98 60.2
BraA09t38512Z Brassica rapa HOM05D003160 ORTHO05D005967 2.7e-25 118.6 98 60.2
BcaC01g04706 Brassica carinata HOM05D003160 ORTHO05D005967 3.6e-25 118.2 98 60.2
C03p34700 Brassica napus HOM05D003160 ORTHO05D005967 3.6e-25 118.2 98 60.2
BolC3t15780H Brassica oleracea HOM05D003160 ORTHO05D005967 3.6e-25 118.2 98 60.2
Rhsim07G0198600 Rhododendron simsii HOM05D003160 ORTHO05D005967 3.6e-25 118.2 88 67.0
ATR0605G225 Amborella trichopoda HOM05D003160 ORTHO05D005967 4.6e-25 117.9 90 65.6
HanXRQChr02g0043721 Helianthus annuus HOM05D003160 ORTHO05D005967 4.6e-25 117.9 98 61.2
BcaC04g20948 Brassica carinata HOM05D003160 ORTHO05D005967 6.1e-25 117.5 98 59.2
C09p37610 Brassica napus HOM05D003160 ORTHO05D005967 6.1e-25 117.5 98 59.2
BolC9t56592H Brassica oleracea HOM05D003160 ORTHO05D005967 6.1e-25 117.5 98 59.2
Carub.0006s2810 Capsella rubella HOM05D003160 ORTHO05D005967 7.9e-25 117.1 98 61.2
Dinv44718 Davidia involucrata HOM05D003160 ORTHO05D005967 1.0e-24 116.7 95 61.1
Oeu001061.1 Olea europaea HOM05D003160 ORTHO05D005967 1.0e-24 116.7 96 61.5
A03p28680 Brassica napus HOM05D003160 ORTHO05D005967 1.4e-24 116.3 95 61.1
BraA03t12067Z Brassica rapa HOM05D003160 ORTHO05D005967 1.4e-24 116.3 95 61.1
HanXRQChr10g0278581 Helianthus annuus HOM05D003160 ORTHO05D005967 1.8e-24 115.9 99 59.6
MBI05_g36578_MAGBIO Magnolia biondii HOM05D003160 ORTHO05D005967 2.3e-24 115.5 92 62.0
Actinidia33169 Actinidia chinensis HOM05D003160 ORTHO05D005967 3.0e-24 115.2 99 59.6
Lsat_1_v5_gn_1_4801 Lactuca sativa HOM05D003160 ORTHO05D005967 3.0e-24 115.2 91 64.8
PSO541G2449 Papaver somniferum HOM05D003160 ORTHO05D005967 3.9e-24 114.8 89 62.9
PSO675G8510 Papaver somniferum HOM05D003160 ORTHO05D005967 3.9e-24 114.8 89 62.9
Sabra13G0099100 Salix brachista HOM05D003160 ORTHO05D005967 3.9e-24 114.8 95 62.1
Psat4g066200 Pisum sativum HOM05D006563 ORTHO05D008154 6.7e-24 114.0 98 57.1
Hund25486 Selenicereus undatus HOM05D003160 ORTHO05D005967 2.0e-23 112.5 98 60.2
DCAR_017152 Daucus carota HOM05D003160 ORTHO05D005967 3.3e-23 111.7 95 60.0
Actinidia29568 Actinidia chinensis HOM05D003160 ORTHO05D005967 4.3e-23 111.3 88 62.5
HPP92_004308 Vanilla planifolia HOM05D003160 ORTHO05D005967 7.4e-23 110.5 90 62.2
DCAR_013172 Daucus carota HOM05D003160 ORTHO05D005967 1.7e-22 109.4 90 61.1
A07p14220 Brassica napus HOM05D003160 ORTHO05D005967 2.8e-22 108.6 91 58.2
BraA07t29180Z Brassica rapa HOM05D003160 ORTHO05D005967 2.8e-22 108.6 91 58.2
BcaC06g34989 Brassica carinata HOM05D003160 ORTHO05D005967 3.7e-22 108.2 91 57.1
C07p20940 Brassica napus HOM05D003160 ORTHO05D005967 3.7e-22 108.2 91 57.1
BolC7t42626H Brassica oleracea HOM05D003160 ORTHO05D005967 3.7e-22 108.2 91 57.1
Peaxi162Scf00160g01617 Petunia axillaris HOM05D003160 ORTHO05D005967 6.3e-22 107.5 95 60.0
AagrBONN_evm.TU.Sc2ySwM_362.1478 Anthoceros agrestis HOM05D003160 ORTHO05D005967 3.1e-21 105.1 89 55.1
ECA246G5055 Erigeron canadensis HOM05D003160 ORTHO05D005967 3.1e-21 105.1 93 61.3
BcaB03g14186 Brassica carinata HOM05D003160 ORTHO05D005967 6.9e-21 104.0 88 60.2
Pp3c23_11680 Physcomitrium patens HOM05D003160 ORTHO05D005967 1.5e-20 102.8 89 53.9
SEGI_07127 Sequoiadendron giganteum HOM05D003160 ORTHO05D005967 2.0e-20 102.4 90 54.4
SEGI_11516 Sequoiadendron giganteum HOM05D003160 ORTHO05D005967 2.0e-20 102.4 90 54.4
Pp3c24_12520 Physcomitrium patens HOM05D003160 ORTHO05D005967 2.6e-20 102.1 89 52.8
Pp3c23_6060 Physcomitrium patens HOM05D003160 ORTHO05D005967 3.4e-20 101.7 99 50.5
SEGI_06406 Sequoiadendron giganteum HOM05D003160 ORTHO05D005967 1.3e-19 99.8 88 51.1
Mapoly0006s0050 Marchantia polymorpha HOM05D003160 ORTHO05D005967 7.2e-18 94.0 92 46.7
HanXRQChr01g0001181 Helianthus annuus HOM05D003160 ORTHO05D005967 1.0e-16 90.1 75 62.7
Mapoly0173s0013 Marchantia polymorpha HOM05D003160 ORTHO05D005967 1.0e-16 90.1 95 42.1
MCO11G452 Micromonas commoda HOM05D003160 ORTHO05D005967 1.4e-16 89.7 87 47.1
CiPaw.11G007300 Carya illinoinensis HOM05D003160 ORTHO05D005967 2.3e-16 89.0 64 70.3
Aqoxy7G00951 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 5.1e-16 87.8 66 68.2
Dinv13072 Davidia involucrata HOM05D003160 ORTHO05D005967 8.8e-16 87.0 69 66.7
Lalb_Chr07g0183411 Lupinus albus HOM05D003160 ORTHO05D005967 1.5e-15 86.3 63 66.7
CBR_g87784 Chara braunii HOM05D003160 ORTHO05D005967 7.4e-15 84.0 92 40.2
SMO013G0019 Selaginella moellendorffii HOM05D003160 ORTHO05D005967 9.7e-15 83.6 88 40.9
PRCOL_00001524 Prasinoderma coloniale HOM05D003160 ORTHO05D005967 3.1e-13 78.6 90 44.4
Cre11.g467569 Chlamydomonas reinhardtii HOM05D003160 ORTHO05D005967 2.6e-12 75.5 88 45.5
MBI18_g28945_MAGBIO Magnolia biondii HOM05D003160 ORTHO05D023424 2.2e-11 72.4 73 45.2
Nn6g35751 Nelumbo nucifera HOM05D003160 ORTHO05D005967 2.9e-11 72.0 60 63.3
HanXRQChr13g0423141 Helianthus annuus HOM05D003160 ORTHO05D005967 8.5e-11 70.5 55 69.1
Nn4g25263 Nelumbo nucifera HOM05D003160 ORTHO05D023424 8.5e-11 70.5 75 46.7
CDE02G1156 Ceratophyllum demersum HOM05D000950 ORTHO05D000774 2.1e-09 65.9 92 34.8
ATR0796G229 Amborella trichopoda HOM05D003160 ORTHO05D023424 8.0e-09 63.9 89 37.1
Hma1.2p1_1361F.1_g278140 Hydrangea macrophylla HOM05D003160 ORTHO05D005967 1.0e-08 63.5 55 60.0
Hma1.2p1_1723F.1_g299390 Hydrangea macrophylla HOM05D003160 ORTHO05D005967 1.0e-08 63.5 55 60.0
Hma1.2p1_0883F.1_g232270 Hydrangea macrophylla HOM05D003160 ORTHO05D005967 1.4e-08 63.2 55 60.0
MD10G1172700 Malus domestica HOM05D003160 ORTHO05D005967 5.2e-08 61.2 52 50.0
TAR636G1756 Trochodendron aralioides HOM05D003160 ORTHO05D023424 2.6e-07 58.9 76 39.5
CDE11G0013 Ceratophyllum demersum HOM05D000538 ORTHO05D000614 4.4e-07 58.2 66 43.9


User provided reference genes

Program Settings