Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0687500 Oryza sativa ssp. japonica HOM05D018866 ORTHO05D002963 2.5e-117 426.0 319 100.0
Zm00001eb187460 Zea mays HOM05D000410 ORTHO05D002963 8.3e-44 181.8 359 43.5
Zm00001eb251010 Zea mays HOM05D018866 ORTHO05D002963 1.3e-28 131.3 80 80.0
HPP92_020690 Vanilla planifolia HOM05D000410 ORTHO05D002963 3.2e-19 100.1 327 35.8
Zm00001eb103430 Zea mays HOM05D018866 ORTHO05D002963 3.9e-17 93.2 80 65.0
HPP92_014929 Vanilla planifolia HOM05D000410 ORTHO05D002963 3.3e-16 90.1 330 28.8
Actinidia10871 Actinidia chinensis HOM05D000410 ORTHO05D002963 4.3e-16 89.7 292 32.5
TAR636G3151 Trochodendron aralioides HOM05D000410 ORTHO05D002963 5.6e-16 89.4 320 29.7
Thecc.03G236500 Theobroma cacao HOM05D000410 ORTHO05D002963 1.2e-15 88.2 327 30.0
TWI60G0489 Tripterygium wilfordii HOM05D000410 ORTHO05D002963 4.7e-15 86.3 331 30.5
TAR629G2559 Trochodendron aralioides HOM05D000410 ORTHO05D002963 8.1e-15 85.5 300 31.7
HPP92_014648 Vanilla planifolia HOM05D000410 ORTHO05D002963 1.4e-14 84.7 106 51.9
PGR042G2973 Punica granatum HOM05D000410 ORTHO05D002963 1.8e-14 84.3 301 29.6
TWI81G0043 Tripterygium wilfordii HOM05D000410 ORTHO05D002963 4.0e-14 83.2 308 30.8
Nitab4.5_0007226g0020 Nicotiana tabacum HOM05D000410 ORTHO05D002963 5.2e-14 82.8 312 30.4
PGR031G3665 Punica granatum HOM05D000410 ORTHO05D002963 6.8e-14 82.4 277 30.3
Duzib068G0858 Durio zibethinus HOM05D000410 ORTHO05D002963 8.9e-14 82.0 309 29.8
TAR375G0421 Trochodendron aralioides HOM05D000410 ORTHO05D002963 8.9e-14 82.0 316 30.7
Dinv28900 Davidia involucrata HOM05D000410 ORTHO05D002963 2.6e-13 80.5 298 30.9
Manes.15G171500 Manihot esculenta HOM05D000410 ORTHO05D002963 2.6e-13 80.5 343 29.7
CDE12G0441 Ceratophyllum demersum HOM05D000410 ORTHO05D002963 3.4e-13 80.1 302 28.1
Nitab4.5_0001708g0030 Nicotiana tabacum HOM05D000410 ORTHO05D002963 3.4e-13 80.1 306 28.1
TAR374G1463 Trochodendron aralioides HOM05D000410 ORTHO05D002963 3.4e-13 80.1 302 30.5
MBI04_g44417_MAGBIO Magnolia biondii HOM05D000410 ORTHO05D002963 4.4e-13 79.7 261 30.3
MBI04_g45962_MAGBIO Magnolia biondii HOM05D000410 ORTHO05D002963 4.4e-13 79.7 261 30.3
Gohir.A12G211700 Gossypium hirsutum HOM05D000410 ORTHO05D002963 7.6e-13 79.0 298 32.2
Potri.001G148600 Populus trichocarpa HOM05D000410 ORTHO05D002963 7.6e-13 79.0 281 40.9
Zm00001eb311570 Zea mays HOM05D039816 ORTHO05D445245 7.6e-13 79.0 63 60.3
Manes.17G020100 Manihot esculenta HOM05D000410 ORTHO05D002963 9.9e-13 78.6 341 28.7
Peaxi162Scf00084g00027 Petunia axillaris HOM05D000410 ORTHO05D002963 1.3e-12 78.2 104 46.2
Actinidia31483 Actinidia chinensis HOM05D000410 ORTHO05D002963 1.7e-12 77.8 259 29.3
Gorai.008G229800 Gossypium raimondii HOM05D000410 ORTHO05D002963 1.7e-12 77.8 302 32.1
Zm00001eb390750 Zea mays HOM05D000410 ORTHO05D002963 2.2e-12 77.4 329 28.0
COL.COLO4_06707 Corchorus olitorius HOM05D000410 ORTHO05D002963 2.9e-12 77.0 308 37.0
CiPaw.12G058700 Carya illinoinensis HOM05D000410 ORTHO05D002963 3.7e-12 76.6 315 27.3
PGSC0003DMG400001841 Solanum tuberosum HOM05D000410 ORTHO05D002963 3.7e-12 76.6 314 28.3
CDE04G1820 Ceratophyllum demersum HOM05D000410 ORTHO05D002963 4.9e-12 76.3 302 33.4
Glyma.01G203300 Glycine max HOM05D000410 ORTHO05D002963 4.9e-12 76.3 306 29.4
Gohir.D12G214200 Gossypium hirsutum HOM05D000410 ORTHO05D002963 4.9e-12 76.3 302 35.8
PGSC0003DMG400026593 Solanum tuberosum HOM05D000410 ORTHO05D002963 4.9e-12 76.3 107 45.8
CsaV3_3G002110 Cucumis sativus L. HOM05D000410 ORTHO05D002963 6.4e-12 75.9 309 28.5
Gohir.A08G161400 Gossypium hirsutum HOM05D000410 ORTHO05D002963 6.4e-12 75.9 316 32.6
Solyc08g077460.3 Solanum lycopersicum HOM05D000410 ORTHO05D002963 6.4e-12 75.9 318 28.0
Ciclev10020548m.g Citrus clementina HOM05D000410 ORTHO05D002963 8.4e-12 75.5 289 31.1
CSS0004938 Camellia sinensis var. sinensis HOM05D000410 ORTHO05D002963 1.1e-11 75.1 306 35.9
Nitab4.5_0000506g0240 Nicotiana tabacum HOM05D000410 ORTHO05D002963 1.1e-11 75.1 106 47.2
Solyc06g061020.3 Solanum lycopersicum HOM05D000410 ORTHO05D002963 1.1e-11 75.1 107 45.8
Sopen06g021170 Solanum pennellii HOM05D000410 ORTHO05D002963 1.1e-11 75.1 107 45.8
Sopen08g026050 Solanum pennellii HOM05D000410 ORTHO05D002963 1.1e-11 75.1 316 29.7
Dinv25169 Davidia involucrata HOM05D000410 ORTHO05D002963 1.4e-11 74.7 103 48.5
Thhalv10008231m.g Eutrema salsugineum HOM05D000410 ORTHO05D002963 1.4e-11 74.7 114 48.2
Gohir.D08G181300 Gossypium hirsutum HOM05D000410 ORTHO05D002963 1.4e-11 74.7 316 39.2
HPP92_014926 Vanilla planifolia HOM05D000410 ORTHO05D002963 1.4e-11 74.7 90 51.1
Actinidia03400 Actinidia chinensis HOM05D000410 ORTHO05D002963 1.9e-11 74.3 295 27.5
Cfa012361 Carpinus fangiana HOM05D000410 ORTHO05D002963 1.9e-11 74.3 303 32.7
Gorai.004G190300 Gossypium raimondii HOM05D000410 ORTHO05D002963 1.9e-11 74.3 318 44.0
Lalb_Chr09g0329641 Lupinus albus HOM05D000410 ORTHO05D002963 1.9e-11 74.3 343 28.9
Sed0019352 Sechium edule HOM05D000410 ORTHO05D002963 1.9e-11 74.3 320 27.2
VMungo1215G2465 Vigna mungo HOM05D000410 ORTHO05D002963 1.9e-11 74.3 302 29.5
Potri.003G085800 Populus trichocarpa HOM05D000410 ORTHO05D002963 2.4e-11 73.9 288 30.2
Solyc08g007120.3 Solanum lycopersicum HOM05D000410 ORTHO05D002963 2.4e-11 73.9 105 47.6
Gohir.A03G003100 Gossypium hirsutum HOM05D000410 ORTHO05D002963 3.2e-11 73.6 323 39.0
MELO3C003360.2 Cucumis melo HOM05D000410 ORTHO05D002963 4.1e-11 73.2 319 28.5
Aa31LG9G15200 Aethionema arabicum HOM05D000410 ORTHO05D002963 5.4e-11 72.8 320 26.2
AL1G47020 Arabidopsis lyrata HOM05D000410 ORTHO05D002963 5.4e-11 72.8 106 46.2
Gohir.D11G028100 Gossypium hirsutum HOM05D000410 ORTHO05D002963 5.4e-11 72.8 116 45.7
MD06G1043600 Malus domestica HOM05D000410 ORTHO05D002963 5.4e-11 72.8 280 29.3
Sp1g28230 Schrenkiella parvula HOM05D000410 ORTHO05D002963 5.4e-11 72.8 104 47.1
AT4G17680 Arabidopsis thaliana HOM05D000410 ORTHO05D002963 7.1e-11 72.4 103 45.6
Sopen08g003070 Solanum pennellii HOM05D000410 ORTHO05D002963 7.1e-11 72.4 105 47.6
CsaV3_3G049650 Cucumis sativus L. HOM05D000410 ORTHO05D002963 9.2e-11 72.0 319 28.5
Duzib205G1992 Durio zibethinus HOM05D000410 ORTHO05D002963 9.2e-11 72.0 306 33.7
GSVIVG01013266001 Vitis vinifera HOM05D000410 ORTHO05D002963 9.2e-11 72.0 270 28.5
BraA09t38905Z Brassica rapa HOM05D000410 ORTHO05D002963 1.2e-10 71.6 111 47.7
Gorai.007G030800 Gossypium raimondii HOM05D000410 ORTHO05D002963 1.2e-10 71.6 116 44.8
Nitab4.5_0000185g0300 Nicotiana tabacum HOM05D000410 ORTHO05D002963 1.2e-10 71.6 307 26.7
Nitab4.5_0009819g0010 Nicotiana tabacum HOM05D000410 ORTHO05D002963 1.2e-10 71.6 106 46.2
Zm00001eb179670 Zea mays HOM05D018866 ORTHO05D002963 1.2e-10 71.6 67 61.2
A03p50610 Brassica napus HOM05D000410 ORTHO05D002963 1.6e-10 71.2 307 27.7
Carub.0001s3107 Capsella rubella HOM05D000410 ORTHO05D002963 1.6e-10 71.2 112 45.5
Prupe.5G050300 Prunus persica HOM05D000410 ORTHO05D002963 1.6e-10 71.2 111 43.2
THA.LOC104812822 Tarenaya hassleriana HOM05D000410 ORTHO05D002963 1.6e-10 71.2 235 28.9
Ah.12g053780 Amaranthus hybridus HOM05D000410 ORTHO05D002963 2.1e-10 70.9 108 47.2
EL10Ac5g12214 Beta vulgaris HOM05D000410 ORTHO05D002963 2.1e-10 70.9 107 45.8
Glyma.11G039700 Glycine max HOM05D000410 ORTHO05D002963 2.1e-10 70.9 306 27.8
Haze_08322 Corylus avellana HOM05D000410 ORTHO05D002963 2.7e-10 70.5 308 31.8
FAN13G1868 Fragaria x ananassa HOM05D000410 ORTHO05D002963 2.7e-10 70.5 323 28.2
Atru.chr9.1140 Acer truncatum HOM05D000410 ORTHO05D002963 4.6e-10 69.7 111 45.9
AUR62007204 Chenopodium quinoa HOM05D000410 ORTHO05D002963 4.6e-10 69.7 108 46.3
MELO3C013883.2 Cucumis melo HOM05D000410 ORTHO05D002963 4.6e-10 69.7 304 28.6
Gohir.D03G169300 Gossypium hirsutum HOM05D000410 ORTHO05D002963 4.6e-10 69.7 108 46.3
Medtr4g099060 Medicago truncatula HOM05D000410 ORTHO05D002963 4.6e-10 69.7 301 28.9
PGSC0003DMG400020510 Solanum tuberosum HOM05D000410 ORTHO05D002963 4.6e-10 69.7 267 28.1
Actinidia25931 Actinidia chinensis HOM05D000410 ORTHO05D002963 6.0e-10 69.3 102 46.1
Gorai.003G179400 Gossypium raimondii HOM05D000410 ORTHO05D002963 6.0e-10 69.3 108 46.3
Psat2g174360 Pisum sativum HOM05D000410 ORTHO05D002963 6.0e-10 69.3 295 29.2
CARHR224400 Cardamine hirsuta HOM05D000410 ORTHO05D002963 7.8e-10 68.9 307 27.0
ClCG09G012480 Citrullus lanatus HOM05D000410 ORTHO05D002963 7.8e-10 68.9 320 26.9
Eucgr.D02146 Eucalyptus grandis HOM05D000410 ORTHO05D002963 7.8e-10 68.9 329 28.6
AUR62018798 Chenopodium quinoa HOM05D000410 ORTHO05D002963 1.0e-09 68.6 103 47.6
FvH4_5g20850 Fragaria vesca HOM05D000410 ORTHO05D002963 1.0e-09 68.6 320 27.5
FAN18G0369 Fragaria x ananassa HOM05D000410 ORTHO05D002963 1.0e-09 68.6 320 27.5
CARHR032120 Cardamine hirsuta HOM05D000410 ORTHO05D002963 1.3e-09 68.2 111 41.4
FAN04G2418 Fragaria x ananassa HOM05D000410 ORTHO05D002963 1.7e-09 67.8 323 27.9
Peaxi162Scf00190g00029 Petunia axillaris HOM05D000410 ORTHO05D002963 1.7e-09 67.8 104 44.2
vmacro14113 Vaccinium macrocarpon HOM05D000410 ORTHO05D002963 1.7e-09 67.8 104 45.2
AT1G32740 Arabidopsis thaliana HOM05D000410 ORTHO05D002963 2.3e-09 67.4 112 42.9
FAN08G2615 Fragaria x ananassa HOM05D000410 ORTHO05D002963 2.3e-09 67.4 323 27.9
Sabra03G0055700 Salix brachista HOM05D000410 ORTHO05D002963 2.3e-09 67.4 115 42.6
vmacro00369 Vaccinium macrocarpon HOM05D000410 ORTHO05D002963 2.3e-09 67.4 99 44.4
Os10g0565500 Oryza sativa ssp. japonica HOM05D000410 ORTHO05D002963 3.0e-09 67.0 114 38.6
Sabra01G0118500 Salix brachista HOM05D000410 ORTHO05D002963 3.9e-09 66.6 111 43.2
Sed0020068 Sechium edule HOM05D000410 ORTHO05D002963 3.9e-09 66.6 292 26.0
CANSAT21G1942 Cannabis sativa HOM05D000410 ORTHO05D002963 5.1e-09 66.2 113 40.7
HanXRQChr17g0535651 Helianthus annuus HOM05D000410 ORTHO05D002963 5.1e-09 66.2 102 41.2
Hma1.2p1_0414F.1_g147550 Hydrangea macrophylla HOM05D000410 ORTHO05D002963 5.1e-09 66.2 113 40.7
Zm00001eb023970 Zea mays HOM05D000410 ORTHO05D002963 5.1e-09 66.2 108 43.5
Phvul.002G002700 Phaseolus vulgaris HOM05D000410 ORTHO05D002963 6.6e-09 65.9 320 30.0
QL12p007792 Quercus lobata HOM05D000410 ORTHO05D002963 6.6e-09 65.9 77 50.6
Hund11297 Selenicereus undatus HOM05D000410 ORTHO05D002963 6.6e-09 65.9 111 43.2
Sc01g0007850 Simmondsia chinensis HOM05D000410 ORTHO05D002963 6.6e-09 65.9 78 48.7
Cc08_g01570 Coffea canephora HOM05D000410 ORTHO05D002963 8.6e-09 65.5 79 46.8
Lj2g0008503 Lotus japonicus HOM05D000410 ORTHO05D002963 8.6e-09 65.5 103 41.7
BcaC06g33572 Brassica carinata HOM05D000410 ORTHO05D002963 1.1e-08 65.1 307 26.4
C07p48930 Brassica napus HOM05D000410 ORTHO05D002963 1.1e-08 65.1 307 26.4
BolC7t45401H Brassica oleracea HOM05D000410 ORTHO05D002963 1.1e-08 65.1 307 26.4
Lsat_1_v5_gn_6_89121 Lactuca sativa HOM05D000410 ORTHO05D002963 1.5e-08 64.7 270 30.4
Rhsim07G0120500 Rhododendron simsii HOM05D000410 ORTHO05D002963 1.5e-08 64.7 104 45.2
CiPaw.11G085800 Carya illinoinensis HOM05D000410 ORTHO05D002963 2.5e-08 63.9 112 42.0
PSO782G0633 Papaver somniferum HOM05D000410 ORTHO05D002963 2.5e-08 63.9 325 28.3
VMungo0251G2888 Vigna mungo HOM05D000410 ORTHO05D002963 2.5e-08 63.9 296 28.0
Carub.0007s2370 Capsella rubella HOM05D000410 ORTHO05D002963 3.3e-08 63.5 246 27.6
Eucgr.E00327 Eucalyptus grandis HOM05D000410 ORTHO05D002963 3.3e-08 63.5 298 33.9
Lsat_1_v5_gn_3_15981 Lactuca sativa HOM05D000410 ORTHO05D002963 4.3e-08 63.2 106 40.6
Oeu017311.1 Olea europaea HOM05D000410 ORTHO05D002963 5.6e-08 62.8 102 39.2
PSO063G3541 Papaver somniferum HOM05D000410 ORTHO05D002963 5.6e-08 62.8 326 27.9
arahy.Tifrunner.gnm1.ann1.6R4MXJ Arachis hypogaea HOM05D000410 ORTHO05D002963 7.3e-08 62.4 110 40.0
arahy.Tifrunner.gnm1.ann1.Y6VK3W Arachis hypogaea HOM05D000410 ORTHO05D002963 7.3e-08 62.4 110 40.0
AL7G36910 Arabidopsis lyrata HOM05D000410 ORTHO05D002963 9.6e-08 62.0 105 42.9
Lalb_Chr16g0386211 Lupinus albus HOM05D000410 ORTHO05D002963 9.6e-08 62.0 112 42.0
Hma1.2p1_0311F.1_g121150 Hydrangea macrophylla HOM05D000410 ORTHO05D002963 1.2e-07 61.6 308 37.3
DCAR_008308 Daucus carota HOM05D000410 ORTHO05D002963 1.6e-07 61.2 106 40.6
Lalb_Chr05g0220741 Lupinus albus HOM05D000410 ORTHO05D002963 1.6e-07 61.2 328 25.0
Medtr5g013690 Medicago truncatula HOM05D000410 ORTHO05D002963 1.6e-07 61.2 324 25.0
ClCG10G002020 Citrullus lanatus HOM05D000410 ORTHO05D002963 2.1e-07 60.8 308 24.7
Sp7g16460 Schrenkiella parvula HOM05D000410 ORTHO05D002963 2.1e-07 60.8 99 41.4
AL8G11180 Arabidopsis lyrata HOM05D000410 ORTHO05D002963 2.8e-07 60.5 105 43.8
BraA03t14152Z Brassica rapa HOM05D000410 ORTHO05D002963 2.8e-07 60.5 305 27.2
RcHm_v2.0_Chr7g0207871 Rosa chinensis HOM05D000410 ORTHO05D002963 2.8e-07 60.5 100 39.0
AL8G11200 Arabidopsis lyrata HOM05D000410 ORTHO05D002963 3.6e-07 60.1 102 44.1
arahy.Tifrunner.gnm1.ann1.D5YLID Arachis hypogaea HOM05D000410 ORTHO05D002963 3.6e-07 60.1 114 41.2
arahy.Tifrunner.gnm1.ann1.I1CICT Arachis hypogaea HOM05D000410 ORTHO05D002963 3.6e-07 60.1 114 41.2
HanXRQChr06g0167201 Helianthus annuus HOM05D000410 ORTHO05D002963 3.6e-07 60.1 102 39.2
Lalb_Chr09g0324001 Lupinus albus HOM05D000410 ORTHO05D002963 3.6e-07 60.1 304 27.0
Ah.07g199690 Amaranthus hybridus HOM05D000410 ORTHO05D002963 4.7e-07 59.7 104 39.4
BcaNung00069 Brassica carinata HOM05D000410 ORTHO05D002963 8.1e-07 58.9 98 37.8
Glyma.17G150900 Glycine max HOM05D000410 ORTHO05D002963 8.1e-07 58.9 283 26.5
THA.LOC104806686 Tarenaya hassleriana HOM05D000410 ORTHO05D002963 8.1e-07 58.9 253 25.7
Manes.14G064700 Manihot esculenta HOM05D000410 ORTHO05D003410 1.1e-06 58.5 56 48.2
CDE02G1513 Ceratophyllum demersum HOM05D000410 ORTHO05D002963 1.4e-06 58.2 98 37.8
Glyma.05G068400 Glycine max HOM05D000410 ORTHO05D002963 1.4e-06 58.2 283 38.9
Psat4g077520 Pisum sativum HOM05D000410 ORTHO05D002963 1.4e-06 58.2 109 39.4
TPR.G19186 Trifolium pratense HOM05D000410 ORTHO05D002963 1.4e-06 58.2 109 39.4
Oeu037542.1 Olea europaea HOM05D000410 ORTHO05D002963 1.8e-06 57.8 104 39.4
Aqoxy3G02584 Aquilegia oxysepala HOM05D000410 ORTHO05D002963 3.1e-06 57.0 78 42.3
unitig_26.g10076 Utricularia gibba HOM05D000410 ORTHO05D001514 3.1e-06 57.0 99 42.4
A06p45330 Brassica napus HOM05D000410 ORTHO05D002963 4.0e-06 56.6 296 27.0
Lj2P250T9 Lonicera japonica HOM05D000410 ORTHO05D002963 4.0e-06 56.6 83 41.0
Thhalv10000973m.g Eutrema salsugineum HOM05D000410 ORTHO05D002963 5.2e-06 56.2 104 43.3
FAN22G0263 Fragaria x ananassa HOM05D000410 ORTHO05D003410 6.8e-06 55.8 75 36.0
Lalb_Chr16g0382191 Lupinus albus HOM05D000410 ORTHO05D003410 6.8e-06 55.8 329 22.8
Nn3g16829 Nelumbo nucifera HOM05D000410 ORTHO05D003410 6.8e-06 55.8 320 24.1
RcHm_v2.0_Chr4g0441971 Rosa chinensis HOM05D000410 ORTHO05D003410 6.8e-06 55.8 75 36.0
Zm00001eb037720 Zea mays HOM05D000411 ORTHO05D000310 6.8e-06 55.8 46 65.2
ATR0829G036 Amborella trichopoda HOM05D000410 ORTHO05D002963 8.9e-06 55.5 321 24.6
AT5G47050 Arabidopsis thaliana HOM05D000410 ORTHO05D002963 8.9e-06 55.5 105 41.0
BcaB07g30798 Brassica carinata HOM05D000410 ORTHO05D002963 8.9e-06 55.5 102 45.1
BcaC04g21656 Brassica carinata HOM05D000410 ORTHO05D002963 8.9e-06 55.5 105 43.8
C09p29270 Brassica napus HOM05D000410 ORTHO05D002963 8.9e-06 55.5 105 43.8
BolC9t55787H Brassica oleracea HOM05D000410 ORTHO05D002963 8.9e-06 55.5 105 43.8
CSS0025021 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D002963 8.9e-06 55.5 104 38.5
FAN17G0301 Fragaria x ananassa HOM05D000410 ORTHO05D003410 8.9e-06 55.5 75 36.0
Lj4g0007315 Lotus japonicus HOM05D000410 ORTHO05D002963 8.9e-06 55.5 74 43.2
HPP92_017678 Vanilla planifolia HOM05D000410 ORTHO05D001514 8.9e-06 55.5 54 48.1


User provided reference genes

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