Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 8.9e-119 430.6 278 100.0
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 1.6e-72 276.9 213 85.4
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 2.6e-70 269.6 216 84.3
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 1.7e-69 266.9 279 71.3
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 1.4e-68 263.8 246 75.2
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 1.8e-66 256.9 215 82.3
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 3.0e-66 256.1 192 88.5
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 3.1e-63 246.1 215 80.5
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 2.6e-62 243.0 208 76.9
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 1.0e-61 241.1 215 79.1
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 1.1e-60 237.7 216 75.9
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 1.1e-60 237.7 215 78.6
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 1.4e-60 237.3 215 77.2
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 1.4e-60 237.3 246 68.7
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 1.2e-59 234.2 215 76.3
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 1.6e-59 233.8 194 81.4
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 1.0e-58 231.1 210 74.8
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 5.1e-58 228.8 247 68.8
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 6.7e-58 228.4 216 75.9
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 6.7e-58 228.4 214 75.7
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 1.1e-57 227.6 256 53.1
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 1.5e-57 227.3 215 75.8
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 2.6e-57 226.5 215 72.1
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 3.3e-57 226.1 247 68.8
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 4.4e-57 225.7 215 75.8
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 4.4e-57 225.7 215 75.8
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 5.7e-57 225.3 217 74.7
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 1.3e-56 224.2 286 61.5
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 1.7e-56 223.8 215 72.6
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 1.7e-56 223.8 283 62.2
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 2.2e-56 223.4 253 67.6
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 3.7e-56 222.6 216 70.4
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 4.8e-56 222.2 215 73.0
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 4.8e-56 222.2 215 74.4
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 1.1e-55 221.1 215 73.5
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 1.4e-55 220.7 215 74.9
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 1.8e-55 220.3 215 74.9
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 1.8e-55 220.3 215 73.5
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 1.8e-55 220.3 215 71.6
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 2.4e-55 219.9 206 64.1
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 2.4e-55 219.9 281 63.0
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 2.4e-55 219.9 215 73.5
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 3.1e-55 219.5 215 74.0
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 3.1e-55 219.5 215 73.5
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 4.1e-55 219.2 253 67.2
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 4.1e-55 219.2 215 73.5
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 5.3e-55 218.8 215 74.9
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 9.1e-55 218.0 215 73.5
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 9.1e-55 218.0 228 55.3
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 9.1e-55 218.0 215 74.4
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 1.2e-54 217.6 216 74.5
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 1.5e-54 217.2 215 73.5
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 1.5e-54 217.2 261 63.2
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 1.5e-54 217.2 253 67.6
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 1.5e-54 217.2 206 76.7
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 2.0e-54 216.9 259 65.3
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 2.6e-54 216.5 261 63.6
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 3.5e-54 216.1 253 66.0
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 3.5e-54 216.1 215 73.5
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 7.7e-54 214.9 276 62.3
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 7.7e-54 214.9 215 73.5
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 1.0e-53 214.5 286 61.2
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 1.3e-53 214.2 223 58.3
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 1.3e-53 214.2 215 73.5
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 1.3e-53 214.2 214 72.4
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 1.7e-53 213.8 214 70.1
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 2.2e-53 213.4 215 72.6
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 2.2e-53 213.4 217 68.2
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 2.9e-53 213.0 214 70.1
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.9e-53 213.0 216 73.1
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.9e-53 213.0 216 73.1
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 5.0e-53 212.2 213 72.8
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 5.0e-53 212.2 299 48.8
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 6.5e-53 211.8 217 73.7
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 2.5e-52 209.9 287 60.6
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 3.2e-52 209.5 219 70.3
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 5.5e-52 208.8 214 69.6
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 1.2e-51 207.6 211 71.1
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 2.1e-51 206.8 156 91.0
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 2.7e-51 206.5 216 72.2
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 1.8e-50 203.8 194 73.2
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 3.0e-50 203.0 252 53.6
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 3.9e-50 202.6 228 64.0
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 5.2e-50 202.2 182 74.7
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 5.2e-50 202.2 215 71.6
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 6.7e-50 201.8 187 60.4
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 1.5e-49 200.7 214 70.6
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 2.6e-49 199.9 206 70.4
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 8.2e-48 194.9 148 89.9
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 1.4e-47 194.1 288 57.6
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 7.0e-47 191.8 210 58.1
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 2.0e-46 190.3 179 63.7
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 2.2e-45 186.8 146 88.4
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 6.1e-43 178.7 146 80.1
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 6.1e-43 178.7 146 80.1
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 4.5e-38 162.5 85 88.2
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 1.3e-37 161.0 87 87.4
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 2.9e-37 159.8 85 90.6
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 4.8e-32 142.5 171 68.4
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 7.0e-31 138.7 178 53.4
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 8.6e-29 131.7 157 52.9
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 3.4e-25 119.8 86 73.3
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 9.8e-25 118.2 91 71.4
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 1.7e-24 117.5 142 53.5
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 1.5e-20 104.4 176 47.7
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 1.8e-18 97.4 151 68.2
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 3.1e-18 96.7 90 61.1
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 1.9e-15 87.4 150 65.3
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 4.6e-14 82.8 64 68.8
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 6.6e-13 79.0 108 72.2
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 2.0e-09 67.4 87 50.6
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 8.3e-08 62.0 51 68.6
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 8.3e-08 62.0 40 72.5
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 6.0e-06 55.8 51 54.9


User provided reference genes

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