Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0622500 Oryza sativa ssp. japonica HOM05D003677 ORTHO05D004231 3.0e-58 228.4 125 100.0
Zm00001eb185100 Zea mays HOM05D003677 ORTHO05D004231 8.0e-43 177.2 125 78.4
Nitab4.5_0001372g0020 Nicotiana tabacum HOM05D003677 ORTHO05D004231 8.6e-29 130.6 129 58.9
FAN05G3813 Fragaria x ananassa HOM05D003677 ORTHO05D004231 5.6e-28 127.9 132 55.3
COL.COLO4_15475 Corchorus olitorius HOM05D003677 ORTHO05D004231 4.7e-27 124.8 136 52.9
Duzib106G0879 Durio zibethinus HOM05D003677 ORTHO05D004231 8.0e-27 124.0 134 53.0
Gohir.A11G247500 Gossypium hirsutum HOM05D003677 ORTHO05D004231 8.0e-27 124.0 132 53.8
Gohir.D11G257800 Gossypium hirsutum HOM05D003677 ORTHO05D004231 8.0e-27 124.0 132 53.8
Gorai.007G276100 Gossypium raimondii HOM05D003677 ORTHO05D004231 8.0e-27 124.0 132 53.8
Gorai.013G187700 Gossypium raimondii HOM05D003677 ORTHO05D004231 8.0e-27 124.0 136 50.7
Thecc.05G271100 Theobroma cacao HOM05D003677 ORTHO05D004231 2.3e-26 122.5 132 51.5
FAN09G1189 Fragaria x ananassa HOM05D003677 ORTHO05D004231 3.0e-26 122.1 123 56.1
PGR004G1803 Punica granatum HOM05D003677 ORTHO05D004231 3.0e-26 122.1 142 53.5
Hund22161 Selenicereus undatus HOM05D003677 ORTHO05D004231 3.0e-26 122.1 124 55.6
Oeu039587.1 Olea europaea HOM05D003677 ORTHO05D004231 4.0e-26 121.7 132 53.0
Gohir.A13G167400 Gossypium hirsutum HOM05D003677 ORTHO05D004231 5.2e-26 121.3 137 51.1
RcHm_v2.0_Chr3g0449621 Rosa chinensis HOM05D003677 ORTHO05D004231 5.2e-26 121.3 134 53.7
EL10Ac4g09010 Beta vulgaris HOM05D003677 ORTHO05D004231 6.8e-26 120.9 131 55.0
Hma1.2p1_1512F.1_g287960 Hydrangea macrophylla HOM05D003677 ORTHO05D004231 6.8e-26 120.9 131 51.9
Manes.09G148000 Manihot esculenta HOM05D003677 ORTHO05D004231 8.9e-26 120.6 128 52.3
FAN02G0354 Fragaria x ananassa HOM05D000329 ORTHO05D000833 1.2e-25 120.2 134 53.7
Actinidia38938 Actinidia chinensis HOM05D003677 ORTHO05D004231 1.5e-25 119.8 131 54.2
Peaxi162Scf00528g00119 Petunia axillaris HOM05D003677 ORTHO05D004231 5.8e-25 117.9 136 54.4
Cc02_g08860 Coffea canephora HOM05D003677 ORTHO05D004231 7.5e-25 117.5 114 57.9
Sabra13G0042900 Salix brachista HOM05D003677 ORTHO05D004231 9.8e-25 117.1 127 51.2
Sed0020318 Sechium edule HOM05D003677 ORTHO05D004231 9.8e-25 117.1 148 48.0
CANSAT54G2642 Cannabis sativa HOM05D003677 ORTHO05D004231 1.3e-24 116.7 129 54.3
Nitab4.5_0003780g0080 Nicotiana tabacum HOM05D003677 ORTHO05D004231 1.3e-24 116.7 139 54.0
Atru.chr4.2875 Acer truncatum HOM05D003677 ORTHO05D004231 1.7e-24 116.3 140 49.3
ClCG11G010570 Citrullus lanatus HOM05D003677 ORTHO05D004231 1.7e-24 116.3 148 48.0
Cfa006347 Carpinus fangiana HOM05D003677 ORTHO05D004231 2.2e-24 115.9 132 50.0
Haze_04435 Corylus avellana HOM05D003677 ORTHO05D004231 2.2e-24 115.9 132 50.0
Hund06908 Selenicereus undatus HOM05D003677 ORTHO05D004231 2.2e-24 115.9 135 51.1
SGA_v2.0_scaffold28G12049 Striga asiatica HOM05D003677 ORTHO05D004231 2.2e-24 115.9 142 50.7
MSTRG.24694 Avicennia marina HOM05D003677 ORTHO05D004231 3.7e-24 115.2 131 52.7
Duzib128G0961 Durio zibethinus HOM05D003677 ORTHO05D004231 4.9e-24 114.8 108 56.5
Lj2A42G39 Lonicera japonica HOM05D003677 ORTHO05D004231 4.9e-24 114.8 149 47.7
Sopen04g005150 Solanum pennellii HOM05D003677 ORTHO05D004231 4.9e-24 114.8 136 52.2
Actinidia34752 Actinidia chinensis HOM05D003677 ORTHO05D004231 8.3e-24 114.0 136 50.7
Cc11_g04280 Coffea canephora HOM05D003677 ORTHO05D004231 8.3e-24 114.0 114 57.0
Atru.chr2.953 Acer truncatum HOM05D003677 ORTHO05D004231 1.1e-23 113.6 111 57.7
arahy.Tifrunner.gnm1.ann1.5GL5JK Arachis hypogaea HOM05D003677 ORTHO05D004231 1.1e-23 113.6 134 49.3
Sc20g0000650 Simmondsia chinensis HOM05D003677 ORTHO05D004231 1.1e-23 113.6 139 48.9
CiPaw.02G020400 Carya illinoinensis HOM05D003677 ORTHO05D004231 1.9e-23 112.8 132 51.5
Nitab4.5_0000687g0030 Nicotiana tabacum HOM05D003677 ORTHO05D004231 2.4e-23 112.5 135 53.3
Nitab4.5_0000718g0030 Nicotiana tabacum HOM05D003677 ORTHO05D004231 2.4e-23 112.5 113 57.5
Nitab4.5_0010738g0010 Nicotiana tabacum HOM05D003677 ORTHO05D004231 2.4e-23 112.5 141 52.5
Potri.019G018900 Populus trichocarpa HOM05D003677 ORTHO05D004231 2.4e-23 112.5 129 50.4
Atru.chr2.976 Acer truncatum HOM05D003677 ORTHO05D004231 3.2e-23 112.1 111 56.8
Cpa.g.c35686 Carica papaya HOM05D003677 ORTHO05D004231 3.2e-23 112.1 129 52.7
Lsat_1_v5_gn_1_9200 Lactuca sativa HOM05D003677 ORTHO05D004231 3.2e-23 112.1 136 50.7
Solyc04g010000.3 Solanum lycopersicum HOM05D003677 ORTHO05D004231 3.2e-23 112.1 136 50.0
CDE04G2392 Ceratophyllum demersum HOM05D003677 ORTHO05D004231 4.1e-23 111.7 130 50.0
CDE07G1504 Ceratophyllum demersum HOM05D003677 ORTHO05D004231 4.1e-23 111.7 99 60.6
DCAR_009653 Daucus carota HOM05D003677 ORTHO05D004231 4.1e-23 111.7 122 50.8
Potri.013G046900 Populus trichocarpa HOM05D003677 ORTHO05D004231 4.1e-23 111.7 130 51.5
Ciclev10021882m.g Citrus clementina HOM05D003677 ORTHO05D004231 5.4e-23 111.3 134 49.3
Eucgr.H04231 Eucalyptus grandis HOM05D003677 ORTHO05D004231 5.4e-23 111.3 150 47.3
TWI81G0231 Tripterygium wilfordii HOM05D003677 ORTHO05D004231 5.4e-23 111.3 135 51.9
arahy.Tifrunner.gnm1.ann1.U10W7S Arachis hypogaea HOM05D003677 ORTHO05D004231 7.0e-23 110.9 134 49.3
CsaV3_2G009740 Cucumis sativus L. HOM05D003677 ORTHO05D004231 7.0e-23 110.9 140 47.9
Dinv24683 Davidia involucrata HOM05D003677 ORTHO05D004231 7.0e-23 110.9 137 48.2
Nitab4.5_0002915g0010 Nicotiana tabacum HOM05D003677 ORTHO05D004231 7.0e-23 110.9 113 57.5
TAR633G1327 Trochodendron aralioides HOM05D003677 ORTHO05D004231 7.0e-23 110.9 152 46.1
unitig_61.g26069 Utricularia gibba HOM05D003677 ORTHO05D004231 7.0e-23 110.9 108 56.5
Nn1g02804 Nelumbo nucifera HOM05D003677 ORTHO05D004231 9.2e-23 110.5 150 46.7
Sopen04g005130 Solanum pennellii HOM05D003677 ORTHO05D004231 9.2e-23 110.5 136 50.7
Migut.F01271 Erythranthe guttata HOM05D003677 ORTHO05D004231 1.2e-22 110.2 134 49.3
Peaxi162Scf00015g00308 Petunia axillaris HOM05D003677 ORTHO05D004231 1.6e-22 109.8 99 60.6
Rhsim09G0137200 Rhododendron simsii HOM05D003677 ORTHO05D004231 1.6e-22 109.8 132 50.0
Nn3g19689 Nelumbo nucifera HOM05D003677 ORTHO05D004231 2.0e-22 109.4 143 49.0
SEGI_18661 Sequoiadendron giganteum HOM05D003677 ORTHO05D004231 2.0e-22 109.4 179 39.7
AagrBONN_evm.TU.Sc2ySwM_228.2901 Anthoceros agrestis HOM05D003677 ORTHO05D004231 2.7e-22 109.0 134 47.0
Glyma.20G223000 Glycine max HOM05D003677 ORTHO05D004231 2.7e-22 109.0 131 50.4
ECA238G1929 Erigeron canadensis HOM05D003677 ORTHO05D004231 3.5e-22 108.6 108 60.2
Phvul.008G151836 Phaseolus vulgaris HOM05D003677 ORTHO05D004231 3.5e-22 108.6 136 50.0
Pp3c23_14650 Physcomitrium patens HOM05D003677 ORTHO05D004231 3.5e-22 108.6 160 47.5
MD04G1229900 Malus domestica HOM05D003677 ORTHO05D004231 4.6e-22 108.2 130 50.8
Lsat_1_v5_gn_2_16040 Lactuca sativa HOM05D003677 ORTHO05D004231 6.0e-22 107.8 153 45.1
AUR62004836 Chenopodium quinoa HOM05D003677 ORTHO05D004231 7.8e-22 107.5 135 48.9
MD12G1247000 Malus domestica HOM05D003677 ORTHO05D004231 7.8e-22 107.5 130 50.8
MD12G1247300 Malus domestica HOM05D003677 ORTHO05D004231 7.8e-22 107.5 130 50.8
THA.LOC104805782 Tarenaya hassleriana HOM05D003677 ORTHO05D004231 7.8e-22 107.5 132 50.8
VMungo0720G1875 Vigna mungo HOM05D003677 ORTHO05D004231 7.8e-22 107.5 136 49.3
MSTRG.24142 Avicennia marina HOM05D003677 ORTHO05D004231 1.0e-21 107.1 127 49.6
Oeu002000.1 Olea europaea HOM05D003677 ORTHO05D004231 1.3e-21 106.7 128 51.6
TAR362G0866 Trochodendron aralioides HOM05D003677 ORTHO05D004231 1.3e-21 106.7 154 44.8
Dinv35470 Davidia involucrata HOM05D003677 ORTHO05D004231 1.7e-21 106.3 139 46.8
Aqoxy5G00213 Aquilegia oxysepala HOM05D003677 ORTHO05D004231 2.3e-21 105.9 148 43.9
Mapoly0213s0004 Marchantia polymorpha HOM05D003677 ORTHO05D004231 2.3e-21 105.9 98 60.2
TPR.G9915 Trifolium pratense HOM05D003677 ORTHO05D004231 3.9e-21 105.1 132 48.5
MBI07_g16912_MAGBIO Magnolia biondii HOM05D003677 ORTHO05D004231 8.6e-21 104.0 157 42.7
Medtr1g080150 Medicago truncatula HOM05D003677 ORTHO05D004231 1.1e-20 103.6 135 49.6
Migut.I00390 Erythranthe guttata HOM05D003677 ORTHO05D004231 1.5e-20 103.2 115 49.6
FAN05G1443 Fragaria x ananassa HOM05D003677 ORTHO05D004231 1.5e-20 103.2 132 50.8
Glyma.10G166200 Glycine max HOM05D003677 ORTHO05D004231 1.5e-20 103.2 138 45.7
Gohir.D13G172900 Gossypium hirsutum HOM05D003677 ORTHO05D004231 1.5e-20 103.2 78 62.8
CSS0027708 Camellia sinensis var. sinensis HOM05D003677 ORTHO05D004231 1.9e-20 102.8 150 45.3
CSS0028631 Camellia sinensis var. sinensis HOM05D003677 ORTHO05D004231 1.9e-20 102.8 150 45.3
vmacro10364 Vaccinium macrocarpon HOM05D003677 ORTHO05D004231 1.9e-20 102.8 149 45.0
ATR0736G218 Amborella trichopoda HOM05D003677 ORTHO05D004231 2.5e-20 102.4 89 59.6
Ca_10015_v3 Cicer arietinum L. HOM05D003677 ORTHO05D004231 2.5e-20 102.4 134 50.0
ClCG06G009560 Citrullus lanatus HOM05D003677 ORTHO05D004231 2.5e-20 102.4 126 50.0
Psat6g142680 Pisum sativum HOM05D003677 ORTHO05D004231 3.3e-20 102.1 134 49.3
TPR.G22331 Trifolium pratense HOM05D003677 ORTHO05D004231 3.3e-20 102.1 116 50.9
CAN.G1465.9 Capsicum annuum HOM05D003677 ORTHO05D004231 4.3e-20 101.7 110 55.5
PSO210G0146 Papaver somniferum HOM05D003677 ORTHO05D004231 4.3e-20 101.7 113 50.4
PSO210G7560 Papaver somniferum HOM05D003677 ORTHO05D004231 4.3e-20 101.7 113 50.4
THA.LOC104827474 Tarenaya hassleriana HOM05D003677 ORTHO05D004231 5.6e-20 101.3 136 45.6
PSO832G1483 Papaver somniferum HOM05D003677 ORTHO05D004231 7.3e-20 100.9 150 42.7
Prupe.6G350000 Prunus persica HOM05D003677 ORTHO05D004231 7.3e-20 100.9 71 71.8
PSO210G2652 Papaver somniferum HOM05D003677 ORTHO05D004231 9.5e-20 100.5 113 49.6
Sopen04g005170 Solanum pennellii HOM05D003677 ORTHO05D004231 9.5e-20 100.5 102 52.0
THA.LOC104802833 Tarenaya hassleriana HOM05D003677 ORTHO05D004231 9.5e-20 100.5 121 50.4
GSVIVG01016104001 Vitis vinifera HOM05D003677 ORTHO05D004231 9.5e-20 100.5 111 51.4
GSVIVG01023509001 Vitis vinifera HOM05D003677 ORTHO05D004231 9.5e-20 100.5 68 70.6
Glyma.11G011000 Glycine max HOM05D003677 ORTHO05D004231 1.6e-19 99.8 144 48.6
BcaC05g29937 Brassica carinata HOM05D003677 ORTHO05D004231 2.8e-19 99.0 129 47.3
C05p62750 Brassica napus HOM05D003677 ORTHO05D004231 2.8e-19 99.0 129 47.3
BolC5t34928H Brassica oleracea HOM05D003677 ORTHO05D004231 2.8e-19 99.0 129 47.3
FvH4_6g01880 Fragaria vesca HOM05D003677 ORTHO05D004231 2.8e-19 99.0 132 47.0
FAN14G1798 Fragaria x ananassa HOM05D003677 ORTHO05D004231 2.8e-19 99.0 132 47.0
FAN14G5891 Fragaria x ananassa HOM05D003677 ORTHO05D004231 2.8e-19 99.0 132 47.0
HanXRQChr13g0397681 Helianthus annuus HOM05D003677 ORTHO05D004231 2.8e-19 99.0 92 59.8
Lj5g0022615 Lotus japonicus HOM05D003677 ORTHO05D004231 2.8e-19 99.0 128 51.6
Lalb_Chr02g0149101 Lupinus albus HOM05D003677 ORTHO05D004231 2.8e-19 99.0 134 47.8
Sopen05g033470 Solanum pennellii HOM05D003677 ORTHO05D004231 2.8e-19 99.0 124 49.2
PGSC0003DMG400023407 Solanum tuberosum HOM05D003677 ORTHO05D004231 3.6e-19 98.6 129 46.5
Aa31LG5G14940 Aethionema arabicum HOM05D003677 ORTHO05D004231 4.7e-19 98.2 78 61.5
AT3G04500 Arabidopsis thaliana HOM05D003677 ORTHO05D004231 6.2e-19 97.8 114 48.2
Solyc04g010040.3 Solanum lycopersicum HOM05D003677 ORTHO05D004231 6.2e-19 97.8 109 47.7
HPP92_002516 Vanilla planifolia HOM05D003677 ORTHO05D004231 8.0e-19 97.4 88 56.8
HPP92_002535 Vanilla planifolia HOM05D003677 ORTHO05D004231 8.0e-19 97.4 88 56.8
Peaxi162Scf00152g00828 Petunia axillaris HOM05D003677 ORTHO05D004231 1.8e-18 96.3 77 64.9
Lalb_Chr16g0386451 Lupinus albus HOM05D003677 ORTHO05D004231 2.3e-18 95.9 105 51.4
AL3G14510 Arabidopsis lyrata HOM05D003677 ORTHO05D004231 3.1e-18 95.5 144 44.4
Zm00001eb108490 Zea mays HOM05D003677 ORTHO05D004231 6.8e-18 94.4 108 51.9
Sp3g03350 Schrenkiella parvula HOM05D003677 ORTHO05D004231 8.9e-18 94.0 132 43.9
A05p42980 Brassica napus HOM05D003677 ORTHO05D004231 1.2e-17 93.6 119 48.7
HanXRQChr04g0108621 Helianthus annuus HOM05D003677 ORTHO05D004231 1.2e-17 93.6 91 54.9
Solyc05g055010.4 Solanum lycopersicum HOM05D003677 ORTHO05D004231 1.5e-17 93.2 124 46.8
BraA05t23042Z Brassica rapa HOM05D003677 ORTHO05D004231 2.0e-17 92.8 140 45.0
Thhalv10021407m.g Eutrema salsugineum HOM05D003677 ORTHO05D004231 3.4e-17 92.0 134 43.3
Carub.0003s0366 Capsella rubella HOM05D003677 ORTHO05D004231 5.8e-17 91.3 63 68.3
CARHR078690 Cardamine hirsuta HOM05D003677 ORTHO05D004231 5.8e-17 91.3 63 68.3
QL03p030537 Quercus lobata HOM05D003677 ORTHO05D004231 5.8e-17 91.3 58 75.9
Lj4g0016038 Lotus japonicus HOM05D003677 ORTHO05D004231 2.2e-16 89.4 107 52.3
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 4.9e-16 88.2 62 66.1
CBR_g52330 Chara braunii HOM05D003677 ORTHO05D004231 6.4e-16 87.8 76 61.8
Os08g0567200 Oryza sativa ssp. japonica HOM05D003677 ORTHO05D004231 1.1e-15 87.0 108 49.1
AUR62040925 Chenopodium quinoa HOM05D003677 ORTHO05D004231 1.4e-15 86.7 57 71.9
Migut.I00391 Erythranthe guttata HOM05D003677 ORTHO05D004231 1.9e-15 86.3 83 55.4
DCAR_024364 Daucus carota HOM05D003677 ORTHO05D004231 4.1e-15 85.1 70 61.4
Nitab4.5_0003780g0100 Nicotiana tabacum HOM05D003677 ORTHO05D004231 4.1e-15 85.1 136 46.3
SMO367G0071 Selaginella moellendorffii HOM05D003677 ORTHO05D004231 7.0e-15 84.3 60 66.7
Zm00001eb326740 Zea mays HOM05D003677 ORTHO05D004231 9.2e-15 84.0 106 46.2
Lalb_Chr09g0329801 Lupinus albus HOM05D003677 ORTHO05D004231 2.7e-14 82.4 61 62.3
C03p40840 Brassica napus HOM05D003677 ORTHO05D004231 1.3e-13 80.1 55 69.1
BcaC05g30193 Brassica carinata HOM05D003677 ORTHO05D004231 1.7e-13 79.7 129 42.6
arahy.Tifrunner.gnm1.ann1.64W5EF Arachis hypogaea HOM05D003677 ORTHO05D004231 8.6e-13 77.4 122 41.0
Aqoxy2G03669 Aquilegia oxysepala HOM05D003677 ORTHO05D004231 2.5e-12 75.9 116 45.7
BolC3t16355H Brassica oleracea HOM05D003677 ORTHO05D004231 6.8e-10 67.8 45 68.9
Dinv36116 Davidia involucrata HOM05D003677 ORTHO05D004231 9.9e-09 63.9 107 43.9
A03p33640 Brassica napus HOM05D003677 ORTHO05D004231 7.8e-06 54.3 47 59.6
BraA03t12539Z Brassica rapa HOM05D003677 ORTHO05D004231 7.8e-06 54.3 47 59.6


User provided reference genes

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