Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.7e-192 675.2 356 100.0
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 2.8e-133 479.2 326 70.2
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 3.4e-86 322.8 326 49.1
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 5.7e-86 322.0 320 48.4
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 5.7e-86 322.0 331 48.9
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 2.2e-85 320.1 321 49.2
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 3.5e-83 312.8 315 50.2
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 2.2e-82 310.1 327 46.5
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 3.2e-81 306.2 326 48.5
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 4.2e-81 305.8 331 45.6
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 9.4e-81 304.7 331 46.5
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.3e-79 300.1 332 47.3
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 8.8e-79 298.1 323 45.8
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 8.8e-79 298.1 328 46.3
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.5e-78 297.4 318 45.9
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 2.0e-78 297.0 334 45.2
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 2.0e-78 297.0 333 44.7
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 1.3e-77 294.3 330 44.8
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 2.2e-77 293.5 321 45.2
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 2.2e-77 293.5 322 45.7
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 3.7e-77 292.7 326 45.1
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 4.9e-77 292.4 328 44.2
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 8.3e-77 291.6 321 44.5
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 3.1e-76 289.7 337 45.7
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 4.1e-76 289.3 321 44.2
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 7.0e-76 288.5 326 44.8
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 7.0e-76 288.5 324 43.8
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 1.2e-75 287.7 329 43.2
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 1.2e-75 287.7 316 44.9
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.6e-75 287.3 331 43.5
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 1.6e-75 287.3 320 46.6
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 2.0e-75 287.0 324 43.2
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 4.5e-75 285.8 324 43.2
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 4.5e-75 285.8 324 43.2
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 5.9e-75 285.4 319 46.1
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 7.7e-75 285.0 324 42.9
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 7.7e-75 285.0 324 43.2
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 7.7e-75 285.0 333 45.0
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 1.3e-74 284.3 316 44.6
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 1.3e-74 284.3 326 45.1
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 1.7e-74 283.9 337 45.4
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 5.0e-74 282.3 290 48.6
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 5.0e-74 282.3 325 44.6
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 5.0e-74 282.3 324 45.7
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 6.6e-74 282.0 322 44.1
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 1.1e-73 281.2 337 45.1
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 2.5e-73 280.0 327 45.0
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 3.3e-73 279.6 291 46.0
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 9.5e-73 278.1 335 43.3
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 9.5e-73 278.1 317 42.9
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.6e-72 277.3 321 45.2
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 1.6e-72 277.3 321 43.6
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 1.6e-72 277.3 324 44.1
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 1.6e-72 277.3 322 43.8
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 2.1e-72 276.9 297 44.8
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 2.1e-72 276.9 330 42.7
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 2.8e-72 276.6 319 43.9
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 2.8e-72 276.6 323 44.6
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 3.6e-72 276.2 292 45.5
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 4.7e-72 275.8 326 43.9
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 1.0e-71 274.6 318 43.1
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 1.8e-71 273.9 325 45.5
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 2.3e-71 273.5 296 43.9
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 2.3e-71 273.5 322 42.5
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 4.0e-71 272.7 322 42.9
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 5.2e-71 272.3 322 42.9
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 3.4e-70 269.6 332 42.5
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 1.7e-69 267.3 324 41.0
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 2.2e-69 266.9 334 41.6
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 2.2e-69 266.9 334 41.6
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 2.9e-69 266.5 286 44.8
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 8.3e-69 265.0 274 45.3
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 8.3e-69 265.0 318 42.5
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 1.1e-68 264.6 324 40.4
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 1.8e-68 263.8 375 39.2
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 1.2e-67 261.2 332 42.2
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 3.5e-67 259.6 320 40.3
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 3.5e-67 259.6 332 42.2
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 3.0e-66 256.5 324 39.8
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 5.0e-66 255.8 324 42.6
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 5.0e-66 255.8 325 41.2
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 1.9e-65 253.8 328 41.8
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 2.5e-65 253.4 249 49.8
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 3.3e-65 253.1 333 40.5
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 5.6e-65 252.3 315 41.3
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 2.1e-64 250.4 327 39.8
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 3.6e-64 249.6 311 42.1
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 8.0e-64 248.4 315 41.3
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 1.0e-63 248.1 323 43.3
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 1.0e-63 248.1 288 45.1
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.0e-63 248.1 294 43.2
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 1.4e-63 247.7 323 43.3
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 1.8e-63 247.3 323 43.0
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 4.0e-63 246.1 334 40.1
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 5.2e-63 245.7 323 43.0
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 6.8e-63 245.4 319 41.4
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 8.9e-63 245.0 319 38.9
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 1.2e-62 244.6 330 39.4
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 3.4e-62 243.0 277 43.3
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 4.4e-62 242.7 332 40.1
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 4.4e-62 242.7 334 39.2
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 5.8e-62 242.3 236 49.2
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 2.2e-61 240.4 322 38.2
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 4.9e-61 239.2 326 38.7
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 3.2e-60 236.5 329 40.1
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 4.6e-59 232.6 328 40.5
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 6.0e-59 232.3 350 39.4
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 7.8e-59 231.9 328 37.2
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 3.0e-58 229.9 326 37.7
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 3.3e-57 226.5 328 40.2
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 1.2e-56 224.6 317 37.5
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 1.6e-56 224.2 324 38.6
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 2.8e-56 223.4 319 37.3
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 2.3e-55 220.3 326 37.4
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 6.8e-55 218.8 326 38.3
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 2.0e-54 217.2 332 36.7
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 7.5e-54 215.3 324 37.0
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 9.8e-54 214.9 272 41.5
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 1.7e-53 214.2 324 38.9
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 1.7e-53 214.2 283 38.9
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 1.7e-53 214.2 316 36.4
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.2e-53 213.8 323 38.1
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 2.9e-53 213.4 324 38.6
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 2.9e-53 213.4 326 38.7
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 1.4e-52 211.1 324 38.6
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 2.4e-52 210.3 324 38.0
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 2.4e-52 210.3 323 37.5
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 5.4e-52 209.1 328 36.6
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 9.2e-52 208.4 323 35.3
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 9.2e-52 208.4 320 36.9
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 1.2e-51 208.0 324 37.0
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.2e-51 208.0 323 37.2
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 3.5e-51 206.5 328 36.3
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 6.0e-51 205.7 320 36.6
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 7.8e-51 205.3 326 36.8
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.0e-50 204.9 320 36.6
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 1.0e-50 204.9 289 37.0
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 1.0e-50 204.9 321 36.8
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.3e-50 203.8 323 36.8
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 3.9e-50 203.0 326 35.6
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 1.5e-49 201.1 334 34.7
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 1.9e-49 200.7 330 34.5
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 2.1e-48 197.2 206 48.5
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 1.1e-47 194.9 326 36.5
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 1.8e-47 194.1 324 36.4
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 1.8e-47 194.1 324 36.4
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.8e-47 194.1 274 39.8
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 2.3e-47 193.7 326 36.2
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 2.3e-47 193.7 324 36.7
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 5.2e-47 192.6 291 37.1
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 5.8e-46 189.1 293 35.8
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 5.4e-44 182.6 201 45.3
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 2.1e-43 180.6 184 45.7
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 3.5e-43 179.9 292 35.6
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 3.5e-43 179.9 314 33.4
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 3.5e-43 179.9 314 33.4
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 5.6e-41 172.6 195 43.1
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 6.2e-40 169.1 193 43.0
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 1.1e-33 148.3 274 34.3
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 6.2e-32 142.5 133 46.6
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 9.0e-31 138.7 240 34.2
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.9e-29 133.7 154 40.9
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.1e-23 115.2 138 44.2
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 2.0e-22 110.9 116 45.7
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.4e-20 104.0 123 43.9
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 9.3e-20 102.1 76 56.6
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 7.9e-19 99.0 139 37.4
MCO14G045 Micromonas commoda HOM05D000861 ORTHO05D004749 1.5e-17 94.7 345 24.9
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 2.1e-16 90.9 104 49.0
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 5.8e-14 82.8 165 29.7
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 1.3e-13 81.6 91 39.6
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 4.3e-09 66.6 46 58.7
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.3e-08 65.1 70 42.9
CBR_g4192 Chara braunii HOM05D000019 ORTHO05D022303 6.3e-08 62.8 82 30.5


User provided reference genes

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