Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 2.1e-302 1041.6 533 100.0
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 6.4e-190 667.9 476 70.0
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 2.0e-119 433.7 479 50.3
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 1.0e-118 431.4 477 48.8
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 3.9e-115 419.5 483 47.6
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 4.4e-114 416.0 492 46.3
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 9.7e-114 414.8 483 48.2
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 9.7e-114 414.8 477 46.8
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 2.2e-113 413.7 477 46.5
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 2.8e-113 413.3 474 46.2
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 6.3e-113 412.1 481 47.0
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 8.2e-113 411.8 474 46.0
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 1.4e-112 411.0 474 45.1
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 3.5e-111 406.4 472 47.2
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 7.7e-111 405.2 482 47.1
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 1.3e-110 404.4 475 46.7
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 6.5e-110 402.1 476 45.8
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 8.5e-110 401.7 482 47.5
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 8.5e-110 401.7 475 46.5
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 2.5e-109 400.2 481 44.7
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 5.5e-109 399.1 526 43.5
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 2.1e-108 397.1 488 45.5
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 2.7e-108 396.7 484 44.2
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 4.7e-108 396.0 478 47.9
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 8.0e-108 395.2 461 46.0
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 1.8e-107 394.0 477 44.4
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 3.9e-107 392.9 477 44.9
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 3.9e-107 392.9 463 45.8
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 8.8e-107 391.7 484 43.8
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 8.8e-107 391.7 488 44.9
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 1.1e-106 391.3 478 46.2
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 2.0e-106 390.6 469 45.0
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 3.3e-106 389.8 489 44.8
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 7.4e-106 388.7 474 44.7
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 1.3e-105 387.9 485 45.2
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 6.3e-105 385.6 482 45.2
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 8.2e-105 385.2 486 44.2
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 1.8e-104 384.0 481 44.7
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.3e-102 377.9 462 44.6
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 1.7e-102 377.5 479 45.1
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 8.5e-102 375.2 483 41.4
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 1.5e-101 374.4 483 49.1
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 1.9e-101 374.0 472 45.3
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 3.2e-101 373.2 462 47.2
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 1.2e-100 371.3 478 44.1
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 1.2e-98 364.8 490 41.6
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 1.2e-98 364.8 471 42.3
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 3.4e-98 363.2 473 44.6
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 7.5e-98 362.1 474 44.9
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 2.4e-96 357.1 476 43.9
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 2.4e-96 357.1 484 44.6
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 5.4e-96 355.9 475 42.9
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 5.4e-96 355.9 477 42.3
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 3.5e-95 353.2 512 40.2
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 4.5e-95 352.8 536 40.1
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 2.9e-94 350.1 477 43.0
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 6.5e-94 349.0 480 43.5
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 6.5e-94 349.0 480 42.3
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.1e-93 348.2 517 41.8
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 1.9e-93 347.4 447 44.1
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 1.9e-93 347.4 389 47.8
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 4.2e-93 346.3 481 42.4
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 1.2e-92 344.7 476 43.5
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 2.7e-92 343.6 465 41.9
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 6.8e-91 339.0 518 40.9
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 9.8e-90 335.1 521 39.9
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 2.2e-89 334.0 519 40.3
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 3.7e-89 333.2 493 40.0
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 4.9e-89 332.8 470 43.0
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 6.3e-89 332.4 388 45.1
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 1.4e-88 331.3 537 38.2
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 3.5e-87 326.6 498 39.2
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 1.0e-86 325.1 486 39.7
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 1.7e-86 324.3 461 42.3
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 2.9e-86 323.6 373 46.1
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 4.0e-83 313.2 391 45.8
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 2.6e-82 310.5 418 42.1
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 2.9e-81 307.0 470 41.3
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 2.4e-80 303.9 462 38.7
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 5.4e-80 302.8 565 35.2
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 2.0e-79 300.8 434 40.8
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 7.8e-79 298.9 462 40.7
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 1.0e-78 298.5 464 38.6
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 6.6e-78 295.8 493 37.7
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 6.2e-76 289.3 324 46.0
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 1.0e-75 288.5 483 37.7
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 4.4e-74 283.1 337 46.3
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 3.7e-73 280.0 532 35.3
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 4.6e-71 273.1 489 36.0
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 6.2e-68 262.7 308 46.1
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 7.3e-61 239.2 259 47.9
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 4.7e-60 236.5 513 32.4
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 3.1e-59 233.8 273 46.2
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 1.3e-54 218.4 275 42.9
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 5.6e-53 213.0 326 42.9
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 8.9e-51 205.7 271 41.7
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 2.0e-50 204.5 296 38.9
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 9.6e-45 185.7 195 49.7
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 4.0e-43 180.3 483 30.2
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 9.9e-42 175.6 278 37.8
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 3.8e-41 173.7 174 53.4
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 1.2e-39 168.7 139 60.4
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 5.1e-38 163.3 234 42.3
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 5.6e-37 159.8 192 45.8
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 1.4e-35 155.2 191 41.9
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 7.4e-29 132.9 184 39.7
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 2.1e-28 131.3 165 43.6
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 4.2e-24 117.1 133 46.6
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-23 115.2 347 26.2
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 4.5e-18 97.1 136 41.2
MCO05G648 Micromonas commoda HOM05D006389 ORTHO05D007863 1.9e-16 91.7 300 31.0
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 5.5e-16 90.1 88 53.4
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 1.2e-15 89.0 295 34.2
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 1.9e-13 81.6 146 32.9
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 2.8e-12 77.8 121 38.8
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 1.1e-08 65.9 53 56.6
SEGI_11371 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 3.6e-07 60.8 48 58.3
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 3.0e-06 57.8 111 37.8


User provided reference genes

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