Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 3.3e-235 818.1 458 100.0
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 1.0e-71 275.0 233 63.5
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 1.1e-70 271.6 233 63.1
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 6.5e-66 255.8 234 61.1
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 9.4e-65 251.9 234 59.4
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 1.1e-57 228.4 232 53.0
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 2.5e-57 227.3 231 51.9
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.2e-56 224.9 232 54.7
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 6.1e-56 222.6 232 52.6
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 6.1e-56 222.6 231 52.4
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 1.8e-55 221.1 181 61.3
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.8e-55 221.1 242 51.2
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 1.8e-55 221.1 231 50.2
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 1.8e-55 221.1 235 53.2
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 1.8e-55 221.1 235 53.2
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 3.0e-55 220.3 232 51.7
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 3.0e-55 220.3 232 51.7
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.0e-55 220.3 232 53.0
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 3.9e-55 219.9 232 51.7
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 3.9e-55 219.9 232 51.3
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 8.8e-55 218.8 232 52.6
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 1.1e-54 218.4 232 50.9
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 2.0e-54 217.6 233 49.4
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 3.3e-54 216.9 232 50.0
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 4.4e-54 216.5 231 52.4
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 5.7e-54 216.1 181 60.8
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.3e-53 214.9 242 49.6
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.3e-53 214.9 242 49.6
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.7e-53 214.5 231 51.5
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.2e-53 214.2 232 52.2
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 2.2e-53 214.2 232 49.1
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 2.8e-53 213.8 231 51.5
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 4.8e-53 213.0 182 59.3
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 4.8e-53 213.0 181 59.7
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 6.3e-53 212.6 232 49.1
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 8.2e-53 212.2 181 60.2
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 1.1e-52 211.8 181 59.1
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 2.4e-52 210.7 231 50.6
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 3.1e-52 210.3 231 51.1
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 5.3e-52 209.5 181 58.0
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 9.1e-52 208.8 231 49.4
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 9.1e-52 208.8 231 49.4
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 1.2e-51 208.4 231 48.5
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 2.0e-51 207.6 231 49.8
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 2.0e-51 207.6 231 49.8
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 4.5e-51 206.5 181 56.9
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 5.9e-51 206.1 181 56.4
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 1.7e-50 204.5 181 56.9
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.2e-50 204.1 240 47.9
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 2.2e-50 204.1 242 46.7
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 2.9e-50 203.8 210 51.9
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 2.9e-50 203.8 181 56.9
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 3.8e-50 203.4 233 48.9
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 5.0e-50 203.0 181 57.5
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 5.0e-50 203.0 181 56.9
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.4e-49 201.4 181 56.9
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 1.4e-49 201.4 183 56.3
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 2.5e-49 200.7 231 48.5
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.5e-49 200.7 232 47.8
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 3.2e-49 200.3 247 46.6
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 4.2e-49 199.9 183 56.3
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 7.2e-49 199.1 210 50.5
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 1.2e-48 198.4 164 60.4
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 1.2e-48 198.4 183 55.2
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.6e-48 198.0 183 55.2
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 1.6e-48 198.0 181 56.4
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 2.7e-48 197.2 177 56.5
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 4.7e-48 196.4 181 56.4
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.4e-47 194.9 182 54.4
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.3e-47 194.1 182 54.9
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.9e-47 193.4 182 53.8
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 3.9e-47 193.4 182 53.8
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 5.2e-47 193.0 181 55.2
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 5.2e-47 193.0 242 47.1
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 6.7e-47 192.6 232 45.3
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 6.7e-47 192.6 166 58.4
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 8.8e-47 192.2 182 53.8
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.1e-46 191.8 181 53.6
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 1.1e-46 191.8 181 56.4
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 1.5e-46 191.4 177 57.1
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 1.5e-46 191.4 181 54.7
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 1.5e-46 191.4 181 55.2
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 2.0e-46 191.0 181 53.6
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 2.0e-46 191.0 181 54.7
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 4.4e-46 189.9 238 47.9
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 4.4e-46 189.9 181 53.0
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 5.7e-46 189.5 181 53.0
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 5.7e-46 189.5 182 52.7
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 7.4e-46 189.1 180 53.3
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 7.4e-46 189.1 182 53.3
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 7.4e-46 189.1 182 52.7
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 7.4e-46 189.1 182 53.8
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 9.7e-46 188.7 181 54.1
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 9.7e-46 188.7 183 53.0
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.7e-45 188.0 182 54.9
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 2.2e-45 187.6 181 53.6
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 2.8e-45 187.2 183 51.9
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 2.8e-45 187.2 241 45.2
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 3.7e-45 186.8 183 51.9
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 4.8e-45 186.4 181 52.5
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 4.8e-45 186.4 180 54.4
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.3e-45 186.0 181 54.7
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 8.2e-45 185.7 183 51.4
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 1.1e-44 185.3 226 46.9
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.1e-44 185.3 181 52.5
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 1.4e-44 184.9 181 52.5
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 1.4e-44 184.9 181 54.7
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 1.8e-44 184.5 181 54.1
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 1.8e-44 184.5 170 55.9
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 3.1e-44 183.7 181 54.1
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 4.1e-44 183.3 180 53.3
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 7.0e-44 182.6 180 53.9
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 7.0e-44 182.6 182 51.1
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 7.0e-44 182.6 182 51.1
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 1.2e-43 181.8 166 57.2
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.2e-43 181.8 181 51.9
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 1.2e-43 181.8 181 51.9
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.6e-43 181.4 186 51.6
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 7.7e-43 179.1 187 51.9
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 1.0e-42 178.7 186 50.0
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.3e-42 178.3 209 48.8
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.9e-42 177.2 182 52.2
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 2.9e-42 177.2 168 53.6
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 1.5e-41 174.9 208 47.1
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 1.5e-41 174.9 208 47.1
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 1.5e-41 174.9 208 47.1
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 1.5e-41 174.9 208 47.1
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 1.5e-41 174.9 208 47.1
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 3.2e-41 173.7 186 50.5
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 3.2e-41 173.7 208 46.2
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 7.2e-41 172.6 231 42.9
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.4e-39 168.3 229 44.1
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 2.3e-39 167.5 172 51.2
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 2.3e-39 167.5 186 47.8
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 6.7e-39 166.0 231 42.9
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 2.2e-37 161.0 179 48.0
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 2.8e-37 160.6 182 47.3
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 3.7e-37 160.2 182 46.2
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 1.4e-36 158.3 182 45.6
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 1.6e-35 154.8 181 46.4
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.6e-35 154.8 184 48.9
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.0e-34 152.1 241 40.2
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 2.9e-34 150.6 169 46.2
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.1e-33 148.7 180 41.7
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 4.2e-33 146.7 179 43.0
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 5.5e-33 146.4 121 57.9
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 1.2e-32 145.2 181 44.8
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 2.1e-32 144.4 179 40.8
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 4.0e-31 140.2 181 45.3
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 4.4e-30 136.7 182 44.0
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 9.8e-30 135.6 104 62.5
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 5.4e-28 129.8 120 50.0
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 9.1e-28 129.0 96 60.4
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 3.3e-25 120.6 181 41.4
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.8e-23 114.8 202 35.1
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 4.9e-21 106.7 140 40.7
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 2.9e-18 97.4 106 50.0
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 2.6e-14 84.3 150 32.7
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 7.5e-14 82.8 89 49.4
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 7.5e-14 82.8 89 49.4
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 3.0e-10 70.9 243 27.6
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 1.1e-07 62.4 185 28.6
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 3.4e-06 57.4 186 29.6
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 9.8e-06 55.8 186 30.1
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 9.8e-06 55.8 48 50.0


User provided reference genes

Program Settings