Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 2.0e-161 572.4 288 100.0
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 1.7e-88 330.1 282 62.4
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 2.9e-88 329.3 296 58.1
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 6.5e-88 328.2 298 61.1
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 6.5e-88 328.2 293 59.4
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 6.5e-88 328.2 293 59.4
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 6.5e-88 328.2 281 61.9
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 6.5e-88 328.2 295 57.6
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 5.5e-87 325.1 261 62.8
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 9.3e-87 324.3 300 58.0
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 9.3e-87 324.3 301 57.5
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 1.2e-86 323.9 261 62.5
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 1.2e-86 323.9 283 61.1
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 3.5e-86 322.4 297 58.2
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 3.5e-86 322.4 284 59.5
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 4.6e-86 322.0 277 59.9
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 4.6e-86 322.0 277 59.9
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 4.6e-86 322.0 286 58.4
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 6.0e-86 321.6 260 61.5
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 6.0e-86 321.6 262 61.8
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 7.9e-86 321.2 303 55.4
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 7.9e-86 321.2 260 62.3
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 1.0e-85 320.9 261 61.7
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 1.0e-85 320.9 305 57.4
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 1.3e-85 320.5 252 63.1
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 1.8e-85 320.1 297 58.2
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 1.8e-85 320.1 262 61.5
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 2.3e-85 319.7 300 57.3
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 2.3e-85 319.7 262 61.5
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 3.0e-85 319.3 300 56.3
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 3.9e-85 318.9 260 60.8
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 5.1e-85 318.5 281 58.7
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 8.7e-85 317.8 291 57.4
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 8.7e-85 317.8 250 62.0
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.1e-84 317.4 290 56.6
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 1.9e-84 316.6 261 62.8
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 1.9e-84 316.6 252 61.5
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 2.5e-84 316.2 274 58.4
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 2.5e-84 316.2 274 58.4
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 2.5e-84 316.2 274 58.4
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.5e-84 316.2 294 58.2
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 4.3e-84 315.5 268 61.2
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 5.7e-84 315.1 304 54.9
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 5.7e-84 315.1 304 54.9
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 5.7e-84 315.1 268 61.2
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.4e-84 314.7 261 61.7
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 7.4e-84 314.7 299 57.9
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 7.4e-84 314.7 262 61.8
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 7.4e-84 314.7 278 58.6
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 1.3e-83 313.9 298 55.7
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 1.3e-83 313.9 261 62.5
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 2.8e-83 312.8 295 55.6
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 2.8e-83 312.8 252 62.3
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.7e-83 312.4 297 57.2
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 6.3e-83 311.6 271 58.3
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 6.3e-83 311.6 253 64.4
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 8.2e-83 311.2 304 55.3
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 1.8e-82 310.1 287 57.1
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 2.4e-82 309.7 297 56.9
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.4e-82 309.7 297 56.9
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.1e-82 308.9 266 59.4
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 5.3e-82 308.5 261 61.7
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 5.3e-82 308.5 287 57.1
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 6.9e-82 308.1 272 58.5
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 6.9e-82 308.1 294 55.1
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 6.9e-82 308.1 218 71.1
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.0e-82 307.8 294 56.8
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 1.5e-81 307.0 262 60.3
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 1.5e-81 307.0 262 60.7
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.6e-81 306.2 287 58.2
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 1.0e-80 304.3 262 58.8
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.0e-80 304.3 250 60.0
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.0e-80 304.3 282 58.2
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 1.3e-80 303.9 252 60.3
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 1.3e-80 303.9 318 52.5
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.7e-80 303.5 261 58.6
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.7e-80 303.5 262 58.0
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.7e-80 303.5 264 60.6
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.7e-80 303.5 293 56.7
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 5.0e-80 302.0 303 52.8
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 6.5e-80 301.6 264 58.3
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.1e-79 300.8 285 55.1
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 2.5e-79 299.7 334 50.6
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 3.2e-79 299.3 302 52.6
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 3.2e-79 299.3 275 57.5
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 4.2e-79 298.9 256 57.8
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 5.5e-79 298.5 264 58.0
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 5.5e-79 298.5 297 55.6
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 7.2e-79 298.1 278 56.1
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 9.3e-79 297.7 298 53.7
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 9.3e-79 297.7 289 56.1
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.6e-78 297.0 262 58.4
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 2.1e-78 296.6 296 54.7
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 2.7e-78 296.2 231 61.0
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.6e-78 295.8 316 53.2
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 3.0e-77 292.7 299 51.8
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 3.0e-77 292.7 265 57.4
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 3.0e-77 292.7 260 58.5
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 1.9e-76 290.0 260 58.1
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 4.3e-76 288.9 287 54.4
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 4.3e-76 288.9 269 53.9
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 5.7e-76 288.5 291 56.0
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 9.7e-76 287.7 269 53.9
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.3e-75 287.3 223 63.2
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 2.4e-74 283.1 294 52.7
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 5.3e-74 282.0 300 50.3
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 2.0e-73 280.0 320 51.9
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 2.0e-73 280.0 241 58.9
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 2.0e-73 280.0 312 49.7
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 4.5e-73 278.9 262 56.5
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 1.0e-72 277.7 290 53.1
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 1.0e-72 277.7 290 53.1
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 3.8e-72 275.8 291 50.2
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 5.5e-71 271.9 266 53.8
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 7.2e-71 271.6 260 55.0
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 2.1e-70 270.0 266 54.5
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 3.0e-69 266.2 262 53.1
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 4.4e-68 262.3 273 53.5
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 4.1e-66 255.8 265 51.7
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 1.0e-64 251.1 239 55.2
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 1.4e-63 247.3 237 54.4
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 1.6e-62 243.8 260 48.5
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.1e-62 243.4 292 46.6
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 3.6e-62 242.7 217 56.7
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.1e-60 237.7 194 58.8
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 8.2e-59 231.5 269 45.4
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 1.6e-57 227.3 313 43.1
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.8e-53 213.8 213 56.3
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 3.3e-52 209.5 142 69.7
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 4.4e-52 209.1 180 62.2
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.5e-49 199.1 187 56.1
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 1.0e-48 198.0 142 65.5
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 1.5e-47 194.1 142 61.3
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.7e-43 180.6 239 43.9
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 1.2e-41 174.5 124 67.7
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 3.5e-41 172.9 283 39.9
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 3.8e-40 169.5 114 70.2
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.8e-37 158.7 173 51.4
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.1e-34 149.8 112 62.5
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 4.5e-33 146.0 130 56.2
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 7.8e-33 145.2 241 38.6
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 2.8e-30 136.7 163 50.3
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 3.5e-25 119.8 260 35.4
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 2.3e-24 117.1 84 63.1
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 3.7e-19 99.8 81 55.6
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.9e-19 99.4 61 72.1
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 4.9e-19 99.4 86 55.8
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 8.3e-19 98.6 147 41.5
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 1.6e-17 94.4 173 32.9
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 2.5e-15 87.0 108 50.9
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.4e-13 81.3 62 61.3
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 5.2e-13 79.3 50 74.0
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 8.9e-13 78.6 70 54.3
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 4.4e-12 76.3 161 29.8
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 7.5e-12 75.5 194 28.9
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 2.9e-11 73.6 156 32.1
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 3.7e-11 73.2 142 29.6
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 4.9e-11 72.8 146 37.0
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 1.1e-10 71.6 166 27.7
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 1.2e-09 68.2 163 25.2
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 5.1e-08 62.8 84 48.8
CANSAT11G1196 Cannabis sativa HOM05D000565 ORTHO05D005648 5.1e-08 62.8 226 27.9
CANSAT11G0092 Cannabis sativa HOM05D000565 ORTHO05D005648 4.3e-07 59.7 218 27.1
Thhalv10007988m.g Eutrema salsugineum HOM05D000565 ORTHO05D004389 5.6e-07 59.3 167 25.1
Mapoly0062s0041 Marchantia polymorpha HOM05D000565 ORTHO05D004389 1.2e-06 58.2 165 26.1
CARHR020500 Cardamine hirsuta HOM05D000565 ORTHO05D004389 2.1e-06 57.4 167 24.6
AL1G32800 Arabidopsis lyrata HOM05D000565 ORTHO05D004389 2.8e-06 57.0 167 25.1
AT1G20020 Arabidopsis thaliana HOM05D000565 ORTHO05D004389 2.8e-06 57.0 167 25.1
Carub.0001s1955 Capsella rubella HOM05D000565 ORTHO05D004389 2.8e-06 57.0 167 24.6
SalBow3G3951 Salvia bowleyana HOM05D000565 ORTHO05D004389 3.6e-06 56.6 165 24.8
Aa31LG7G4470 Aethionema arabicum HOM05D000565 ORTHO05D004389 4.7e-06 56.2 165 24.8
A08p29530 Brassica napus HOM05D000565 ORTHO05D004389 4.7e-06 56.2 171 24.6
BraA08t34890Z Brassica rapa HOM05D000565 ORTHO05D004389 4.7e-06 56.2 171 24.6
THA.LOC104811414 Tarenaya hassleriana HOM05D000565 ORTHO05D004389 6.2e-06 55.8 165 24.2
A07p16060 Brassica napus HOM05D000565 ORTHO05D004389 8.1e-06 55.5 167 24.6


User provided reference genes

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