Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 4.8e-32 140.6 73 100.0
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 4.8e-32 140.6 73 100.0
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 2.6e-25 118.2 62 98.4
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 9.8e-17 89.7 71 63.4
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 1.7e-16 89.0 56 78.6
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 4.9e-16 87.4 71 64.8
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 4.9e-16 87.4 71 64.8
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.1e-15 86.3 56 75.0
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.1e-15 86.3 56 75.0
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.1e-15 86.3 56 75.0
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 1.4e-15 85.9 56 76.8
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 1.4e-15 85.9 71 63.4
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.4e-15 85.9 56 73.2
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 1.8e-15 85.5 55 74.5
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 1.8e-15 85.5 56 75.0
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 2.4e-15 85.1 71 63.4
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 3.2e-15 84.7 56 73.2
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 3.2e-15 84.7 56 73.2
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 3.2e-15 84.7 56 73.2
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 4.1e-15 84.3 56 73.2
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 4.1e-15 84.3 60 71.7
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 4.1e-15 84.3 52 76.9
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 4.1e-15 84.3 56 75.0
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 4.1e-15 84.3 56 75.0
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 4.1e-15 84.3 52 78.8
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 5.4e-15 84.0 56 75.0
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 5.4e-15 84.0 63 61.9
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 5.4e-15 84.0 71 64.8
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 5.4e-15 84.0 56 73.2
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 5.4e-15 84.0 56 73.2
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 5.4e-15 84.0 56 73.2
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 5.4e-15 84.0 56 73.2
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 5.4e-15 84.0 56 73.2
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 5.4e-15 84.0 56 75.0
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 5.4e-15 84.0 56 73.2
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 7.0e-15 83.6 52 78.8
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 7.0e-15 83.6 56 75.0
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 7.0e-15 83.6 59 67.8
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 7.0e-15 83.6 52 78.8
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 7.0e-15 83.6 56 75.0
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.2e-14 82.8 53 71.7
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.2e-14 82.8 52 78.8
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 1.2e-14 82.8 56 71.4
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 1.6e-14 82.4 52 71.2
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.6e-14 82.4 71 62.0
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.6e-14 82.4 71 62.0
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.6e-14 82.4 56 75.0
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 2.0e-14 82.0 56 73.2
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 2.0e-14 82.0 59 66.1
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 2.7e-14 81.6 56 71.4
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 2.7e-14 81.6 52 78.8
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 3.5e-14 81.3 52 75.0
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 3.5e-14 81.3 52 76.9
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 3.5e-14 81.3 52 76.9
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 3.5e-14 81.3 56 71.4
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 4.6e-14 80.9 52 73.1
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 4.6e-14 80.9 56 69.6
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 4.6e-14 80.9 52 75.0
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 4.6e-14 80.9 52 76.9
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 4.6e-14 80.9 52 73.1
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 5.9e-14 80.5 51 76.5
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 7.8e-14 80.1 55 70.9
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 7.8e-14 80.1 56 71.4
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.0e-13 79.7 60 68.3
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 1.0e-13 79.7 56 71.4
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.0e-13 79.7 56 71.4
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 1.0e-13 79.7 51 76.5
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.0e-13 79.7 55 70.9
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 1.0e-13 79.7 52 75.0
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 1.0e-13 79.7 52 75.0
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 1.0e-13 79.7 56 67.9
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 1.0e-13 79.7 52 73.1
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 1.3e-13 79.3 52 71.2
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 1.3e-13 79.3 52 73.1
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 1.3e-13 79.3 56 69.6
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 1.3e-13 79.3 51 72.5
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 1.7e-13 79.0 52 73.1
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 1.7e-13 79.0 56 69.6
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 1.7e-13 79.0 51 74.5
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 1.7e-13 79.0 52 73.1
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 2.3e-13 78.6 52 75.0
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 2.9e-13 78.2 56 69.6
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 2.9e-13 78.2 56 69.6
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 2.9e-13 78.2 52 73.1
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 2.9e-13 78.2 52 73.1
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 2.9e-13 78.2 52 73.1
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 2.9e-13 78.2 56 69.6
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 2.9e-13 78.2 56 69.6
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.9e-13 77.8 56 67.9
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 5.0e-13 77.4 56 66.1
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 5.0e-13 77.4 52 71.2
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 6.6e-13 77.0 52 69.2
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 6.6e-13 77.0 52 69.2
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 8.6e-13 76.6 52 69.2
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 1.1e-12 76.3 52 69.2
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.1e-12 76.3 56 66.1
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.1e-12 76.3 52 71.2
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 1.5e-12 75.9 52 69.2
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 1.5e-12 75.9 52 69.2
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 1.5e-12 75.9 56 67.9
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 1.5e-12 75.9 52 71.2
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 1.5e-12 75.9 52 71.2
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 1.5e-12 75.9 52 76.9
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.9e-12 75.5 56 66.1
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 2.5e-12 75.1 52 69.2
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 2.5e-12 75.1 52 69.2
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 2.5e-12 75.1 52 69.2
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 2.5e-12 75.1 54 68.5
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 3.3e-12 74.7 52 67.3
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 3.3e-12 74.7 52 67.3
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 3.3e-12 74.7 52 67.3
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 3.3e-12 74.7 52 69.2
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 3.3e-12 74.7 52 67.3
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 3.3e-12 74.7 52 71.2
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 4.3e-12 74.3 54 66.7
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 4.3e-12 74.3 52 67.3
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 4.3e-12 74.3 56 66.1
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 5.6e-12 73.9 52 67.3
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 7.3e-12 73.6 52 65.4
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 7.3e-12 73.6 52 65.4
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 7.3e-12 73.6 52 65.4
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 7.3e-12 73.6 52 65.4
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 7.3e-12 73.6 52 65.4
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 7.3e-12 73.6 52 65.4
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 7.3e-12 73.6 52 65.4
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 9.5e-12 73.2 56 67.9
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 1.2e-11 72.8 56 64.3
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 1.6e-11 72.4 52 65.4
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 3.6e-11 71.2 50 72.0
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 3.6e-11 71.2 52 65.4
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 8.0e-11 70.1 67 58.2
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 1.4e-10 69.3 54 59.3
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 2.3e-10 68.6 51 64.7
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 2.3e-10 68.6 51 64.7
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 2.3e-10 68.6 51 64.7
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 2.3e-10 68.6 52 63.5
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 3.1e-10 68.2 54 64.8
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 3.1e-10 68.2 54 64.8
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 7.5e-09 63.5 52 63.5


User provided reference genes

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