Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.3e-51 206.1 104 100.0
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 8.4e-30 133.7 97 68.0
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 2.5e-29 132.1 84 73.8
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 3.2e-29 131.7 84 73.8
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 4.2e-29 131.3 83 74.7
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 4.2e-29 131.3 80 78.8
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 5.5e-29 131.0 84 73.8
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 9.3e-29 130.2 84 73.8
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 9.3e-29 130.2 84 75.0
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 9.3e-29 130.2 100 66.0
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 9.3e-29 130.2 84 72.6
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 1.2e-28 129.8 84 72.6
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 2.1e-28 129.0 84 72.6
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 2.1e-28 129.0 84 72.6
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 2.7e-28 128.6 97 62.9
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 2.7e-28 128.6 92 69.6
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 2.7e-28 128.6 84 73.8
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.5e-28 128.3 84 73.8
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 3.5e-28 128.3 84 76.2
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 4.6e-28 127.9 84 70.2
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 4.6e-28 127.9 80 76.2
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 6.0e-28 127.5 88 71.6
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 6.0e-28 127.5 84 69.0
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 6.0e-28 127.5 88 71.6
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 6.0e-28 127.5 88 71.6
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 7.9e-28 127.1 84 70.2
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 7.9e-28 127.1 88 71.6
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 1.0e-27 126.7 80 76.2
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 1.3e-27 126.3 84 73.8
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 1.8e-27 125.9 80 76.2
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 1.8e-27 125.9 80 73.8
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.8e-27 125.9 84 73.8
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.8e-27 125.9 84 71.4
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 2.3e-27 125.6 85 69.4
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 2.3e-27 125.6 80 72.5
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 2.3e-27 125.6 80 71.2
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 2.3e-27 125.6 84 71.4
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 3.0e-27 125.2 84 71.4
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 3.0e-27 125.2 80 72.5
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 5.1e-27 124.4 80 72.5
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 5.1e-27 124.4 84 71.4
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 6.7e-27 124.0 87 67.8
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 6.7e-27 124.0 92 67.4
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 6.7e-27 124.0 84 71.4
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 8.7e-27 123.6 97 62.9
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 8.7e-27 123.6 84 71.4
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 8.7e-27 123.6 80 73.8
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 1.1e-26 123.2 84 70.2
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 1.5e-26 122.9 94 64.9
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.9e-26 122.5 84 67.9
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 1.9e-26 122.5 80 72.5
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 1.9e-26 122.5 96 67.7
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 2.5e-26 122.1 84 70.2
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 2.5e-26 122.1 92 67.4
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.5e-26 122.1 81 75.3
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.5e-26 122.1 81 75.3
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 3.3e-26 121.7 80 73.8
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 3.3e-26 121.7 80 73.8
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 4.3e-26 121.3 79 75.9
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 5.7e-26 120.9 88 67.0
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 5.7e-26 120.9 83 67.5
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 7.4e-26 120.6 80 68.8
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 7.4e-26 120.6 83 74.7
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 1.3e-25 119.8 92 65.2
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.3e-25 119.8 81 75.3
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.3e-25 119.8 80 71.2
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 1.3e-25 119.8 80 71.2
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 1.3e-25 119.8 84 70.2
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 1.6e-25 119.4 80 70.0
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 1.6e-25 119.4 80 70.0
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 1.6e-25 119.4 79 70.9
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 2.8e-25 118.6 80 71.2
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.7e-25 118.2 62 98.4
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.7e-25 118.2 62 98.4
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 4.8e-25 117.9 87 65.5
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 4.8e-25 117.9 75 77.3
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 6.2e-25 117.5 84 67.9
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 6.2e-25 117.5 84 67.9
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 6.2e-25 117.5 79 73.4
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 1.4e-24 116.3 85 64.7
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.4e-24 116.3 88 64.8
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.8e-24 115.9 84 66.7
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 1.8e-24 115.9 82 67.1
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 2.4e-24 115.5 80 73.8
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 4.1e-24 114.8 80 66.2
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 5.3e-24 114.4 80 66.2
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 5.3e-24 114.4 85 67.1
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 6.9e-24 114.0 82 65.9
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 6.9e-24 114.0 82 65.9
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 6.9e-24 114.0 75 69.3
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 6.9e-24 114.0 80 66.2
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 6.9e-24 114.0 75 74.7
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 9.0e-24 113.6 79 70.9
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.2e-23 113.2 85 67.1
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 1.2e-23 113.2 77 75.3
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 2.0e-23 112.5 79 72.2
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 2.0e-23 112.5 82 63.4
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 2.0e-23 112.5 80 67.5
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 2.6e-23 112.1 82 62.2
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 2.6e-23 112.1 82 63.4
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 2.6e-23 112.1 82 65.9
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 2.6e-23 112.1 82 65.9
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 2.6e-23 112.1 82 65.9
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.6e-23 112.1 85 65.9
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 2.6e-23 112.1 80 66.2
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 2.6e-23 112.1 75 70.7
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 2.6e-23 112.1 82 63.4
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 3.4e-23 111.7 82 64.6
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 5.8e-23 110.9 82 62.2
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 7.6e-23 110.5 79 69.6
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 7.6e-23 110.5 70 80.0
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 2.2e-22 109.0 82 59.8
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 2.2e-22 109.0 82 59.8
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 2.2e-22 109.0 82 59.8
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 2.2e-22 109.0 82 62.2
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 2.2e-22 109.0 80 63.8
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 2.9e-22 108.6 82 59.8
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 2.9e-22 108.6 82 59.8
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 2.9e-22 108.6 82 59.8
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 2.9e-22 108.6 82 59.8
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 5.0e-22 107.8 79 67.1
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 1.4e-21 106.3 83 65.1
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 2.5e-21 105.5 78 66.7
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 7.2e-21 104.0 79 68.4
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 1.2e-20 103.2 79 67.1
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 3.5e-20 101.7 79 59.5
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 3.5e-20 101.7 79 59.5
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 3.5e-20 101.7 79 59.5
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 3.5e-20 101.7 76 67.1
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 3.0e-19 98.6 80 63.8
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.1e-18 96.7 79 65.8
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 1.5e-18 96.3 81 56.8
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.5e-18 96.3 75 62.7
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 2.5e-18 95.5 73 68.5
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 3.3e-18 95.1 67 67.2
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 5.7e-18 94.4 78 59.0
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 9.7e-18 93.6 79 59.5
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 9.7e-18 93.6 73 67.1
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 2.4e-16 89.0 56 78.6
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 4.1e-16 88.2 77 58.4
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.0e-15 85.9 56 69.6
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.3e-14 83.2 53 69.8
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 1.2e-12 76.6 82 50.0
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 2.3e-11 72.4 78 44.9
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 1.4e-08 63.2 39 79.5


User provided reference genes

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