Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 2.0e-192 675.6 345 100.0
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 1.9e-174 615.9 346 89.9
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 1.6e-170 602.8 348 88.5
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 4.0e-137 491.9 347 72.6
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 6.9e-137 491.1 347 72.9
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 1.8e-132 476.5 345 69.9
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 3.0e-132 475.7 345 70.1
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 8.7e-132 474.2 347 69.5
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.5e-131 473.4 346 69.1
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.5e-131 473.4 346 69.1
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 7.4e-131 471.1 347 69.5
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 1.3e-130 470.3 346 68.5
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 2.8e-130 469.2 345 69.0
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 3.7e-130 468.8 346 68.8
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 6.3e-130 468.0 343 68.2
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 8.2e-130 467.6 346 69.1
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 2.4e-129 466.1 349 67.0
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 3.1e-129 465.7 346 70.5
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 3.1e-129 465.7 346 68.5
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 4.1e-129 465.3 349 68.5
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.2e-128 463.8 349 68.2
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 1.2e-128 463.8 322 72.0
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 1.5e-128 463.4 359 66.9
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 1.5e-128 463.4 349 67.0
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 2.0e-128 463.0 349 67.9
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 2.0e-128 463.0 347 68.0
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 2.6e-128 462.6 347 68.3
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 3.4e-128 462.2 373 64.6
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 3.4e-128 462.2 350 68.0
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 3.4e-128 462.2 323 72.8
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 4.5e-128 461.8 352 67.6
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 5.9e-128 461.5 354 66.9
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.0e-127 460.7 349 67.6
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 1.3e-127 460.3 345 67.8
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 1.3e-127 460.3 357 66.4
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 1.3e-127 460.3 347 68.3
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 1.7e-127 459.9 349 66.8
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.7e-127 459.9 347 68.6
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 2.2e-127 459.5 350 67.4
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 2.2e-127 459.5 345 67.8
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 2.2e-127 459.5 345 67.2
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 2.9e-127 459.1 345 66.4
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 2.9e-127 459.1 345 67.0
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 2.9e-127 459.1 345 67.0
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 2.9e-127 459.1 345 67.0
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 2.9e-127 459.1 341 68.6
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 2.9e-127 459.1 347 68.0
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 3.8e-127 458.8 349 68.2
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 3.8e-127 458.8 347 66.9
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 3.8e-127 458.8 345 67.5
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 5.0e-127 458.4 324 71.3
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 6.5e-127 458.0 348 67.0
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 6.5e-127 458.0 344 67.4
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 8.5e-127 457.6 345 67.5
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 8.5e-127 457.6 350 67.4
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 8.5e-127 457.6 347 66.9
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 1.1e-126 457.2 350 68.0
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 1.1e-126 457.2 352 66.8
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 1.1e-126 457.2 348 66.7
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 1.1e-126 457.2 350 67.4
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 1.9e-126 456.4 327 70.3
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 1.9e-126 456.4 345 67.5
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 2.5e-126 456.1 327 70.3
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 2.5e-126 456.1 324 70.4
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 2.5e-126 456.1 352 66.8
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 2.5e-126 456.1 348 66.4
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 3.2e-126 455.7 327 70.6
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 3.2e-126 455.7 348 67.8
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 3.2e-126 455.7 348 66.7
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 3.2e-126 455.7 346 67.1
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 4.2e-126 455.3 352 65.9
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 4.2e-126 455.3 327 70.3
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 4.2e-126 455.3 352 68.5
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 5.5e-126 454.9 355 66.5
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 5.5e-126 454.9 351 65.2
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 1.2e-125 453.8 367 66.5
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 1.2e-125 453.8 347 67.1
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 1.6e-125 453.4 351 66.7
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 1.6e-125 453.4 350 67.4
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 2.1e-125 453.0 345 66.7
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 2.7e-125 452.6 327 70.0
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 2.7e-125 452.6 346 66.8
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 3.6e-125 452.2 351 66.4
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 3.6e-125 452.2 363 65.8
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 6.1e-125 451.4 351 66.1
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 7.9e-125 451.1 343 66.8
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 1.3e-124 450.3 349 67.3
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.8e-124 449.9 343 66.2
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 2.3e-124 449.5 354 67.8
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 5.1e-124 448.4 352 65.3
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 6.7e-124 448.0 346 66.5
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 8.7e-124 447.6 355 65.6
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 1.1e-123 447.2 352 65.1
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 1.1e-123 447.2 327 69.1
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 1.5e-123 446.8 345 66.1
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 1.5e-123 446.8 345 66.1
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 1.9e-123 446.4 345 65.8
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 1.9e-123 446.4 347 66.3
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 2.5e-123 446.0 353 64.9
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 3.3e-123 445.7 345 65.5
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 3.3e-123 445.7 352 65.1
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 9.7e-123 444.1 352 64.8
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 9.7e-123 444.1 352 64.8
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 9.7e-123 444.1 352 65.1
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 9.7e-123 444.1 322 69.6
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 2.2e-122 443.0 347 67.1
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 3.7e-122 442.2 325 69.2
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 6.3e-122 441.4 345 64.6
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 1.1e-121 440.7 325 68.9
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 1.4e-121 440.3 348 65.2
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 6.9e-121 438.0 312 68.9
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 9.1e-121 437.6 344 65.7
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 4.5e-120 435.3 345 65.2
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 1.3e-119 433.7 313 68.7
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 8.5e-119 431.0 345 62.3
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.2e-117 427.2 348 63.8
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 8.8e-116 421.0 388 59.3
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.0e-115 419.9 349 63.9
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 1.4e-113 413.7 327 62.4
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 3.4e-112 409.1 336 59.8
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 4.2e-110 402.1 345 62.0
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 7.9e-109 397.9 327 63.3
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 3.9e-108 395.6 351 60.4
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 3.9e-108 395.6 351 60.4
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 3.9e-108 395.6 332 60.2
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 1.3e-106 390.6 344 59.6
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 4.8e-106 388.7 281 69.4
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 4.8e-106 388.7 322 64.0
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.1e-105 385.6 350 60.9
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 5.9e-104 381.7 327 61.8
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 7.2e-102 374.8 275 68.7
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 7.2e-102 374.8 275 68.7
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 1.0e-100 370.9 348 57.5
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 6.7e-100 368.2 322 59.3
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.2e-99 367.5 322 55.9
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 4.2e-94 349.0 275 65.8
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 9.4e-94 347.8 234 72.6
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 1.2e-93 347.4 329 54.4
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.2e-85 320.9 232 68.5
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 1.8e-84 317.0 197 77.7
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 2.3e-79 300.1 259 60.2
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 4.0e-76 289.3 302 53.0
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 6.0e-64 248.8 249 55.4
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 1.3e-63 247.7 185 67.6
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 3.7e-58 229.6 219 55.7
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 6.0e-56 222.2 165 62.4
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.0e-55 221.5 186 59.7
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.0e-55 221.5 186 59.7
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 1.1e-52 211.5 131 77.9
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 1.4e-52 211.1 118 82.2
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 2.6e-51 206.8 123 79.7
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 5.8e-51 205.7 122 78.7
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 1.2e-40 171.4 164 56.1
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 5.1e-39 166.0 164 55.5
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 1.3e-37 161.4 164 54.3
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 1.9e-30 137.5 149 48.3
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 6.4e-26 122.5 92 66.3
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 8.4e-26 122.1 119 56.3
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 5.1e-23 112.8 70 75.7
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 5.5e-17 92.8 72 59.7
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 1.3e-15 88.2 137 40.9
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 1.3e-15 88.2 93 53.8
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 3.7e-13 80.1 78 53.8
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 5.3e-12 76.3 230 31.3
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 2.5e-09 67.4 119 39.5
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 7.9e-08 62.4 42 71.4
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 4.3e-06 56.6 35 65.7
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 4.3e-06 56.6 52 55.8
BraA05t19886Z Brassica rapa HOM05D001512 ORTHO05D001574 7.4e-06 55.8 126 29.4


User provided reference genes

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