Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 1.0e-160 570.1 299 100.0
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 2.9e-160 568.5 299 99.7
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 3.7e-62 242.7 267 56.6
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 1.6e-60 237.3 290 49.0
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 1.7e-59 233.8 290 48.3
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 4.2e-58 229.2 335 44.5
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 8.3e-54 214.9 299 46.5
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 1.8e-53 213.8 320 43.8
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 1.8e-53 213.8 298 48.3
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 1.2e-52 211.1 292 43.8
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 2.7e-52 209.9 338 43.2
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 2.7e-52 209.9 353 41.1
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 1.7e-51 207.2 325 44.9
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 1.7e-51 207.2 354 39.3
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 5.0e-51 205.7 334 41.9
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 5.0e-51 205.7 301 43.9
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 8.6e-51 204.9 348 42.2
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 1.1e-50 204.5 304 48.0
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 1.5e-50 204.1 345 40.9
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 1.5e-50 204.1 349 42.4
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 2.5e-50 203.4 313 43.5
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 3.3e-50 203.0 359 40.7
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 9.5e-50 201.4 370 40.5
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 9.5e-50 201.4 205 56.6
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 1.2e-49 201.1 295 46.1
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 1.2e-49 201.1 339 41.9
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.6e-49 200.7 312 43.6
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 1.6e-49 200.7 339 40.7
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 2.8e-49 199.9 364 40.7
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 3.6e-49 199.5 218 54.6
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 3.6e-49 199.5 240 47.1
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 6.1e-49 198.7 359 41.2
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 1.0e-48 198.0 240 46.7
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 1.0e-48 198.0 315 43.2
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 1.0e-48 198.0 380 37.1
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 1.4e-48 197.6 152 63.2
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 5.2e-48 195.7 331 42.6
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 6.8e-48 195.3 286 43.7
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 3.4e-47 193.0 388 38.1
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 5.7e-47 192.2 288 45.8
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 9.8e-47 191.4 329 41.9
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.7e-46 190.7 151 62.3
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 1.7e-46 190.7 348 41.4
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 2.2e-46 190.3 347 41.2
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 2.2e-46 190.3 277 44.8
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 2.2e-46 190.3 383 38.1
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 3.7e-46 189.5 213 54.9
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 3.7e-46 189.5 186 54.8
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 4.9e-46 189.1 352 41.2
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 6.3e-46 188.7 213 54.9
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 8.3e-46 188.3 364 43.1
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 1.4e-45 187.6 296 41.9
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 1.8e-45 187.2 217 53.5
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 1.8e-45 187.2 327 43.7
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 4.1e-45 186.0 206 52.4
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 4.1e-45 186.0 384 37.0
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 4.1e-45 186.0 362 40.6
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 5.4e-45 185.7 279 42.3
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 7.0e-45 185.3 296 42.6
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 7.0e-45 185.3 289 44.6
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 9.2e-45 184.9 352 38.4
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 2.7e-44 183.3 214 50.5
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 3.5e-44 183.0 353 37.4
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 5.9e-44 182.2 375 39.7
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 7.8e-44 181.8 286 40.9
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 1.3e-43 181.0 304 41.1
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 1.7e-43 180.6 282 42.9
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.7e-43 180.6 282 42.6
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 2.9e-43 179.9 296 41.2
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 3.9e-43 179.5 151 62.9
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 8.6e-43 178.3 351 39.3
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 1.1e-42 177.9 348 38.2
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 3.3e-42 176.4 226 48.7
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 4.3e-42 176.0 349 39.3
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 5.6e-42 175.6 249 43.0
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 5.6e-42 175.6 299 42.1
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 5.6e-42 175.6 364 37.9
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 7.3e-42 175.3 360 36.4
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 9.5e-42 174.9 380 36.8
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 1.2e-41 174.5 133 63.9
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 1.2e-41 174.5 208 47.6
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 1.6e-41 174.1 387 38.8
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 2.1e-41 173.7 380 38.2
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 2.8e-41 173.3 315 39.7
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 3.6e-41 172.9 364 37.1
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 8.0e-41 171.8 131 63.4
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 8.0e-41 171.8 203 48.3
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 1.8e-40 170.6 350 36.6
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 2.3e-40 170.2 365 36.7
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 3.1e-40 169.9 342 40.1
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 6.8e-40 168.7 363 36.6
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 8.9e-40 168.3 353 37.7
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 1.2e-39 167.9 362 36.2
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 2.0e-39 167.2 374 35.3
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 4.4e-39 166.0 339 37.2
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 4.4e-39 166.0 338 38.2
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 2.2e-38 163.7 205 50.2
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 4.9e-38 162.5 339 37.2
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 9.2e-37 158.3 362 35.9
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 2.7e-36 156.8 341 36.4
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 1.3e-35 154.5 372 34.9
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 8.6e-35 151.8 112 66.1
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 5.6e-34 149.1 266 42.1
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 7.3e-34 148.7 161 49.7
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 2.8e-33 146.7 339 36.3
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 6.2e-33 145.6 341 35.8
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 2.6e-31 140.2 322 36.0
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 2.6e-31 140.2 165 46.7
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 9.8e-31 138.3 280 38.2
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 1.7e-30 137.5 159 47.8
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 1.7e-30 137.5 316 37.0
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 2.2e-30 137.1 194 44.8
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 4.9e-30 136.0 145 51.7
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 4.1e-29 132.9 252 41.3
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 2.7e-28 130.2 146 49.3
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 1.3e-27 127.9 194 43.3
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 4.3e-26 122.9 349 32.7
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 4.3e-26 122.9 153 46.4
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 7.3e-26 122.1 123 51.2
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 2.2e-22 110.5 243 35.8
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 2.2e-22 110.5 127 47.2
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 4.1e-21 106.3 210 41.9
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 4.1e-21 106.3 141 44.7
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 9.2e-21 105.1 315 32.1
MCO04G384 Micromonas commoda HOM05D006277 ORTHO05D007673 4.6e-12 76.3 119 37.8
Nn5g26949 Nelumbo nucifera HOM05D006277 ORTHO05D007673 1.7e-11 74.3 49 67.3
CiPaw.10G123600 Carya illinoinensis HOM05D006277 ORTHO05D007673 4.3e-10 69.7 55 61.8
Cre02.g105050 Chlamydomonas reinhardtii HOM05D006277 ORTHO05D007673 4.0e-08 63.2 135 33.3


User provided reference genes

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