Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0132600 Oryza sativa ssp. japonica HOM05D003177 ORTHO05D003481 6.6e-227 790.4 411 100.0
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 1.9e-117 426.8 424 54.5
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 3.9e-70 269.6 339 44.0
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 2.5e-69 266.9 367 41.4
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 1.8e-67 260.8 411 38.7
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 2.4e-67 260.4 290 47.6
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 5.8e-66 255.8 401 37.9
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 8.4e-65 251.9 313 42.2
Dinv22304 Davidia involucrata HOM05D003177 ORTHO05D003481 9.3e-64 248.4 400 36.2
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 6.0e-63 245.7 321 42.1
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 1.0e-62 245.0 380 38.7
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 2.3e-62 243.8 336 40.2
QL08p013313 Quercus lobata HOM05D003177 ORTHO05D003481 3.9e-62 243.0 383 38.4
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 3.9e-62 243.0 353 39.4
Duzib213G0184 Durio zibethinus HOM05D003177 ORTHO05D003481 8.7e-62 241.9 291 43.0
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 4.3e-61 239.6 386 39.4
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 4.3e-61 239.6 363 38.6
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 5.6e-61 239.2 377 37.9
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 5.6e-61 239.2 274 44.9
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 9.6e-61 238.4 382 38.5
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 1.6e-60 237.7 362 37.3
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 4.8e-60 236.1 370 38.1
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 4.8e-60 236.1 395 35.7
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 8.1e-60 235.3 298 40.3
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 1.8e-59 234.2 261 44.1
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 1.8e-59 234.2 397 36.5
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 2.4e-59 233.8 414 36.5
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 4.0e-59 233.0 375 35.7
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 1.5e-58 231.1 323 37.2
Sabra16G0283700 Salix brachista HOM05D003177 ORTHO05D003481 2.6e-58 230.3 285 41.1
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 3.4e-58 229.9 365 37.5
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 5.8e-58 229.2 326 38.0
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 5.8e-58 229.2 289 40.5
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 7.6e-58 228.8 338 38.2
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 2.2e-57 227.3 288 43.8
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 8.4e-57 225.3 331 38.4
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 1.4e-56 224.6 327 38.8
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 1.9e-56 224.2 277 43.0
Potri.011G133100 Populus trichocarpa HOM05D003177 ORTHO05D003481 1.9e-56 224.2 374 36.6
RcHm_v2.0_Chr5g0037541 Rosa chinensis HOM05D003177 ORTHO05D003481 5.5e-56 222.6 317 40.7
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 1.6e-55 221.1 371 36.1
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 2.7e-55 220.3 313 37.7
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 2.7e-55 220.3 302 37.4
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 4.6e-55 219.5 341 37.8
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 6.0e-55 219.2 326 37.1
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 7.9e-55 218.8 401 34.9
CsaV3_UNG228980 Cucumis sativus L. HOM05D003177 ORTHO05D003481 1.3e-54 218.0 339 38.1
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 1.3e-54 218.0 372 35.8
CAN.G337.89 Capsicum annuum HOM05D003177 ORTHO05D003481 1.8e-54 217.6 286 38.8
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 5.1e-54 216.1 365 34.2
Ca_01752_v3 Cicer arietinum L. HOM05D003177 ORTHO05D003481 8.7e-54 215.3 290 40.7
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 8.7e-54 215.3 224 46.4
arahy.Tifrunner.gnm1.ann1.JSI4TH Arachis hypogaea HOM05D003177 ORTHO05D003481 1.1e-53 214.9 368 36.4
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 1.5e-53 214.5 231 46.3
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 4.3e-53 213.0 365 34.0
Ciclev10008319m.g Citrus clementina HOM05D003177 ORTHO05D003481 7.4e-53 212.2 254 43.3
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 3.7e-52 209.9 252 42.9
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.2e-52 209.1 257 40.5
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 8.1e-52 208.8 410 34.4
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 1.4e-51 208.0 323 36.5
arahy.Tifrunner.gnm1.ann1.2UU78P Arachis hypogaea HOM05D003177 ORTHO05D003481 1.4e-51 208.0 323 36.2
Glyma.12G214200 Glycine max HOM05D003177 ORTHO05D003481 1.4e-51 208.0 371 33.4
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 1.8e-51 207.6 291 37.5
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 2.4e-51 207.2 405 34.1
VMungo1127G0088 Vigna mungo HOM05D003177 ORTHO05D003481 3.1e-51 206.8 293 37.9
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 4.0e-51 206.5 237 40.5
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 5.3e-51 206.1 313 36.7
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 5.3e-51 206.1 257 40.1
Lj3g0022760 Lotus japonicus HOM05D003177 ORTHO05D003481 6.9e-51 205.7 345 35.9
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 6.9e-51 205.7 392 34.2
Psat5g251840 Pisum sativum HOM05D003177 ORTHO05D003481 9.0e-51 205.3 331 35.0
Ciclev10008519m.g Citrus clementina HOM05D003177 ORTHO05D003481 1.5e-50 204.5 376 36.2
Phvul.003G295700 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 2.0e-50 204.1 257 38.9
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.4e-50 203.4 326 35.3
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 1.3e-49 201.4 296 37.5
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 1.7e-49 201.1 256 38.7
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 2.9e-49 200.3 323 35.9
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.9e-49 200.3 292 37.7
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 2.9e-49 200.3 317 37.2
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.8e-49 199.9 295 36.6
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 6.5e-49 199.1 275 38.9
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.5e-49 199.1 314 35.0
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.5e-49 199.1 289 36.7
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 1.4e-48 198.0 269 39.0
TPR.G36746 Trifolium pratense HOM05D003177 ORTHO05D003481 2.5e-48 197.2 286 36.4
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.2e-48 196.8 307 35.5
SHI50408 Sapria himalayana HOM05D003177 ORTHO05D003481 3.2e-48 196.8 273 37.0
Lalb_Chr14g0366151 Lupinus albus HOM05D003177 ORTHO05D003481 5.5e-48 196.1 308 36.0
PSO478G2228 Papaver somniferum HOM05D003177 ORTHO05D003481 7.1e-48 195.7 244 43.4
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.1e-47 194.1 264 37.5
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 2.1e-47 194.1 251 37.8
AUR62020553 Chenopodium quinoa HOM05D003177 ORTHO05D003481 3.5e-47 193.4 389 31.1
Medtr2g082940 Medicago truncatula HOM05D003177 ORTHO05D003481 3.5e-47 193.4 366 33.1
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 6.0e-47 192.6 264 37.5
VMungo1080G1398 Vigna mungo HOM05D003177 ORTHO05D003481 1.0e-46 191.8 311 35.7
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 2.3e-46 190.7 256 39.5
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.0e-46 190.3 264 36.7
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 5.1e-46 189.5 265 37.7
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 8.7e-46 188.7 257 38.5
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 1.1e-45 188.3 264 36.4
arahy.Tifrunner.gnm1.ann1.LTHE3G Arachis hypogaea HOM05D003177 ORTHO05D003481 2.1e-44 184.1 264 37.1
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 2.8e-44 183.7 257 39.7
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 4.8e-44 183.0 309 38.2
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 6.3e-44 182.6 256 39.1
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 8.2e-44 182.2 344 35.2
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 1.1e-43 181.8 306 35.3
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 4.1e-43 179.9 292 36.3
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 5.3e-43 179.5 263 37.3
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 1.2e-42 178.3 294 36.1
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 1.2e-42 178.3 294 36.1
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.2e-42 178.3 347 32.9
Sc19g0005960 Simmondsia chinensis HOM05D003177 ORTHO05D003481 2.9e-41 173.7 278 38.5
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 3.8e-41 173.3 250 38.0
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 3.8e-41 173.3 263 36.5
CDE12G0466 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 1.9e-40 171.0 226 40.7
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 1.9e-40 171.0 315 32.4
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 4.2e-40 169.9 250 38.0
Lj4g0006066 Lotus japonicus HOM05D003177 ORTHO05D003481 4.2e-40 169.9 263 35.7
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 1.2e-39 168.3 250 37.6
Cpa.g.sc97.66 Carica papaya HOM05D003177 ORTHO05D003481 6.1e-39 166.0 311 35.0
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 1.3e-38 164.9 370 31.1
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 3.9e-38 163.3 370 30.8
Hma1.2p1_1546F.1_g289980 Hydrangea macrophylla HOM05D003177 ORTHO05D003481 3.9e-38 163.3 198 41.4
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 1.5e-37 161.4 237 39.2
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 9.7e-37 158.7 368 29.6
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 9.7e-37 158.7 368 29.9
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 9.7e-37 158.7 368 29.6
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 1.6e-36 157.9 250 35.6
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 2.2e-36 157.5 346 32.1
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 2.8e-36 157.1 325 31.4
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 2.8e-36 157.1 263 35.0
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 3.7e-36 156.8 188 41.0
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 4.8e-36 156.4 338 30.8
FAN21G2694 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.5e-33 146.0 194 38.1
Medtr4g081210 Medicago truncatula HOM05D003177 ORTHO05D003481 1.6e-31 141.4 216 36.6
FvH4_3g43110 Fragaria vesca HOM05D003177 ORTHO05D003481 2.3e-30 137.5 210 34.3
FvH4_3g43180 Fragaria vesca HOM05D003177 ORTHO05D003481 3.9e-30 136.7 210 34.8
FAN21G1934 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.0e-29 134.4 210 33.8
Medtr7g007510 Medicago truncatula HOM05D003177 ORTHO05D003481 8.2e-28 129.0 270 31.9
Glyma.U031231 Glycine max HOM05D003177 ORTHO05D003481 1.1e-24 118.6 211 37.0
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 5.5e-24 116.3 180 39.4
SEGI_03301 Sequoiadendron giganteum HOM05D003177 ORTHO05D003481 3.6e-23 113.6 230 27.4
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 7.9e-23 112.5 152 40.1
AL1G67350 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 3.9e-22 110.2 263 30.0
BcaC09g51195 Brassica carinata HOM05D003177 ORTHO05D003481 3.3e-21 107.1 235 30.6
AL1G67370 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 7.7e-18 95.9 241 27.4
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 2.9e-17 94.0 172 34.9
Phvul.005G091800 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 2.9e-17 94.0 322 25.5
FAN16G1316 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.1e-16 92.0 158 31.6
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 1.5e-16 91.7 172 34.9
FvH4_3g42340 Fragaria vesca HOM05D003177 ORTHO05D003481 9.4e-16 89.0 218 28.4
FvH4_3g42560 Fragaria vesca HOM05D003177 ORTHO05D003481 1.6e-15 88.2 218 28.0
FAN11G0113 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.7e-15 87.4 216 28.2
Glyma.U031131 Glycine max HOM05D003177 ORTHO05D003481 2.7e-15 87.4 119 36.1
FAN28G1104 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.3e-13 80.5 228 25.9
FAN11G2904 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.7e-12 78.2 228 25.4
FvH4_3g41772 Fragaria vesca HOM05D003177 ORTHO05D003481 4.5e-10 70.1 99 32.3
unitig_26.g9968 Utricularia gibba HOM05D003177 ORTHO05D003481 9.4e-08 62.4 105 37.1
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 1.8e-06 58.2 94 37.2
CARHR228590 Cardamine hirsuta HOM05D003177 ORTHO05D003481 3.0e-06 57.4 76 35.5


User provided reference genes

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