Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0123300 Oryza sativa ssp. japonica HOM05D002435 ORTHO05D002550 3.8e-17 90.9 63 100.0
Os07g0124500 Oryza sativa ssp. japonica HOM05D002435 ORTHO05D002550 2.3e-14 81.6 42 100.0
Zm00001eb316690 Zea mays HOM05D002435 ORTHO05D002550 4.1e-11 70.9 45 82.2
Zm00001eb069390 Zea mays HOM05D002435 ORTHO05D002550 2.0e-10 68.6 63 81.0
Zm00001eb069420 Zea mays HOM05D002435 ORTHO05D002550 5.9e-10 67.0 45 75.6
HanXRQChr10g0309871 Helianthus annuus HOM05D002435 ORTHO05D002550 3.8e-09 64.3 39 84.6
Lsat_1_v5_gn_5_78820 Lactuca sativa HOM05D002435 ORTHO05D002550 3.8e-09 64.3 41 80.5
Lsat_1_v5_gn_8_99320 Lactuca sativa HOM05D002435 ORTHO05D002550 5.0e-09 63.9 45 80.0
Lalb_Chr20g0111121 Lupinus albus HOM05D002435 ORTHO05D002550 6.5e-09 63.5 45 80.0
HanXRQChr12g0358791 Helianthus annuus HOM05D002435 ORTHO05D002550 3.2e-08 61.2 50 68.0
CSS0026984 Camellia sinensis var. sinensis HOM05D002435 ORTHO05D002550 4.2e-08 60.8 45 71.1
CSS0042978 Camellia sinensis var. sinensis HOM05D002435 ORTHO05D002550 4.2e-08 60.8 45 71.1
MD08G1196100 Malus domestica HOM05D002435 ORTHO05D002550 9.4e-08 59.7 40 80.0
ECA234G1459 Erigeron canadensis HOM05D002435 ORTHO05D002550 1.2e-07 59.3 44 70.5
Glyma.08G052900 Glycine max HOM05D002435 ORTHO05D002550 1.2e-07 59.3 39 79.5
Lalb_Chr02g0153891 Lupinus albus HOM05D002435 ORTHO05D002550 1.2e-07 59.3 39 79.5
Dinv24028 Davidia involucrata HOM05D002435 ORTHO05D002550 1.6e-07 58.9 35 85.7
Glyma.05G245100 Glycine max HOM05D002435 ORTHO05D002550 1.6e-07 58.9 38 81.6
Phvul.002G328808 Phaseolus vulgaris HOM05D002435 ORTHO05D002550 1.6e-07 58.9 39 79.5
VMungo0251G1365 Vigna mungo HOM05D002435 ORTHO05D002550 1.6e-07 58.9 39 79.5
VMungo1383G3550 Vigna mungo HOM05D002435 ORTHO05D002550 1.6e-07 58.9 39 79.5
Zm00001eb074650 Zea mays HOM05D002435 ORTHO05D002550 1.6e-07 58.9 40 75.0
CiPaw.14G038500 Carya illinoinensis HOM05D002435 ORTHO05D002550 2.1e-07 58.5 38 81.6
ECA236G1952 Erigeron canadensis HOM05D002435 ORTHO05D002550 2.1e-07 58.5 45 68.9
Glyma.03G206400 Glycine max HOM05D002435 ORTHO05D002550 2.1e-07 58.5 39 79.5
Lj5g0007003 Lotus japonicus HOM05D002435 ORTHO05D002550 2.1e-07 58.5 41 78.0
Phvul.001G200000 Phaseolus vulgaris HOM05D002435 ORTHO05D002550 2.1e-07 58.5 39 79.5
Sed0009427 Sechium edule HOM05D002435 ORTHO05D002550 2.1e-07 58.5 43 74.4
Prupe.1G530000 Prunus persica HOM05D002435 ORTHO05D002550 2.7e-07 58.2 40 77.5
unitig_744.g24398 Utricularia gibba HOM05D002435 ORTHO05D002550 2.7e-07 58.2 39 76.9
arahy.Tifrunner.gnm1.ann1.1FS3R4 Arachis hypogaea HOM05D002435 ORTHO05D002550 3.6e-07 57.8 38 81.6
arahy.Tifrunner.gnm1.ann1.8RJT4U Arachis hypogaea HOM05D002435 ORTHO05D002550 3.6e-07 57.8 38 81.6
arahy.Tifrunner.gnm1.ann1.AIPG6G Arachis hypogaea HOM05D002435 ORTHO05D002550 3.6e-07 57.8 38 81.6
arahy.Tifrunner.gnm1.ann1.JJ739D Arachis hypogaea HOM05D002435 ORTHO05D002550 3.6e-07 57.8 38 81.6
Psat4g039600 Pisum sativum HOM05D002435 ORTHO05D002550 3.6e-07 57.8 35 85.7
SalBow6G4295 Salvia bowleyana HOM05D002435 ORTHO05D002550 3.6e-07 57.8 45 68.9
MSTRG.11472 Avicennia marina HOM05D002435 ORTHO05D002550 4.6e-07 57.4 45 71.1
Cpa.g.sc5.97 Carica papaya HOM05D002435 ORTHO05D002550 4.6e-07 57.4 41 78.0
TPR.G22303 Trifolium pratense HOM05D002435 ORTHO05D002550 4.6e-07 57.4 35 85.7
TPR.G32270 Trifolium pratense HOM05D002435 ORTHO05D002550 4.6e-07 57.4 38 81.6
GSVIVG01033425001 Vitis vinifera HOM05D002435 ORTHO05D002550 4.6e-07 57.4 35 85.7
Ca_00039_v3 Cicer arietinum L. HOM05D002435 ORTHO05D002550 6.1e-07 57.0 35 82.9
DCAR_009561 Daucus carota HOM05D002435 ORTHO05D002550 6.1e-07 57.0 35 82.9
Psat1g222840 Pisum sativum HOM05D002435 ORTHO05D002550 6.1e-07 57.0 35 82.9
PGR119G1277 Punica granatum HOM05D002435 ORTHO05D002550 6.1e-07 57.0 38 81.6
QL04p014151 Quercus lobata HOM05D002435 ORTHO05D002550 6.1e-07 57.0 35 82.9
Sed0017291 Sechium edule HOM05D002435 ORTHO05D002550 6.1e-07 57.0 35 82.9
Sc07g0002720 Simmondsia chinensis HOM05D002435 ORTHO05D002550 6.1e-07 57.0 44 75.0
FvH4_6g21360 Fragaria vesca HOM05D002435 ORTHO05D002550 7.9e-07 56.6 40 75.0
FAN05G1156 Fragaria x ananassa HOM05D002435 ORTHO05D002550 7.9e-07 56.6 40 75.0
FAN05G4296 Fragaria x ananassa HOM05D002435 ORTHO05D002550 7.9e-07 56.6 40 75.0
FAN14G5005 Fragaria x ananassa HOM05D002435 ORTHO05D002550 7.9e-07 56.6 40 75.0
Oeu016416.2 Olea europaea HOM05D002435 ORTHO05D002550 7.9e-07 56.6 41 73.2
QL07p025605 Quercus lobata HOM05D002435 ORTHO05D002550 7.9e-07 56.6 41 73.2
Potri.002G016900 Populus trichocarpa HOM05D002435 ORTHO05D002550 1.0e-06 56.2 38 81.6
Potri.016G063500 Populus trichocarpa HOM05D002435 ORTHO05D002550 1.0e-06 56.2 38 81.6
Sabra02G0013500 Salix brachista HOM05D002435 ORTHO05D002550 1.0e-06 56.2 35 85.7
MD15G1383900 Malus domestica HOM05D002435 ORTHO05D002550 1.4e-06 55.8 38 78.9
Lj2A360T37 Lonicera japonica HOM05D002435 ORTHO05D002550 1.8e-06 55.5 35 82.9
PGR004G2724 Punica granatum HOM05D002435 ORTHO05D002550 1.8e-06 55.5 35 82.9
MSTRG.4370 Avicennia marina HOM05D002435 ORTHO05D002550 2.3e-06 55.1 39 76.9
MD12G1050600 Malus domestica HOM05D002435 ORTHO05D002550 2.3e-06 55.1 36 80.6
Manes.09G040700 Manihot esculenta HOM05D002435 ORTHO05D002550 2.3e-06 55.1 39 76.9
Potri.005G245100 Populus trichocarpa HOM05D002435 ORTHO05D002550 2.3e-06 55.1 39 79.5
SGA_v2.0_scaffold114G31817 Striga asiatica HOM05D001355 ORTHO05D004435 2.3e-06 55.1 39 74.4
CANSAT21G1354 Cannabis sativa HOM05D002435 ORTHO05D002550 3.0e-06 54.7 45 71.1
Cfa006351 Carpinus fangiana HOM05D002435 ORTHO05D002550 3.0e-06 54.7 38 78.9
Haze_21782 Corylus avellana HOM05D002435 ORTHO05D002550 3.0e-06 54.7 38 78.9
Migut.D01959 Erythranthe guttata HOM05D002435 ORTHO05D002550 3.0e-06 54.7 63 69.8
MBI18_g28929_MAGBIO Magnolia biondii HOM05D002435 ORTHO05D002550 3.0e-06 54.7 45 66.7
Manes.08G039600 Manihot esculenta HOM05D002435 ORTHO05D002550 3.0e-06 54.7 35 82.9
Peaxi162Scf00774g00012 Petunia axillaris HOM05D002435 ORTHO05D002550 3.0e-06 54.7 39 79.5
Sabra05G0189400 Salix brachista HOM05D002435 ORTHO05D002550 3.0e-06 54.7 38 81.6
Actinidia17296 Actinidia chinensis HOM05D002435 ORTHO05D002550 3.9e-06 54.3 35 82.9
Ciclev10011048m.g Citrus clementina HOM05D002435 ORTHO05D002550 3.9e-06 54.3 41 75.6
Haze_04426 Corylus avellana HOM05D002435 ORTHO05D002550 3.9e-06 54.3 35 82.9
Eucgr.A02510 Eucalyptus grandis HOM05D002435 ORTHO05D002550 3.9e-06 54.3 38 78.9
FvH4_5g35510 Fragaria vesca HOM05D002435 ORTHO05D002550 3.9e-06 54.3 39 76.9
FAN04G2089 Fragaria x ananassa HOM05D002435 ORTHO05D002550 3.9e-06 54.3 39 76.9
FAN08G1868 Fragaria x ananassa HOM05D002435 ORTHO05D002550 3.9e-06 54.3 39 76.9
FAN13G1545 Fragaria x ananassa HOM05D002435 ORTHO05D002550 3.9e-06 54.3 39 76.9
FAN18G1255 Fragaria x ananassa HOM05D002435 ORTHO05D002550 3.9e-06 54.3 39 76.9
Lalb_Chr25g0287691 Lupinus albus HOM05D002435 ORTHO05D002550 3.9e-06 54.3 35 82.9
Rhsim10G0043600 Rhododendron simsii HOM05D002435 ORTHO05D002550 3.9e-06 54.3 40 77.5
vmacro07320 Vaccinium macrocarpon HOM05D002435 ORTHO05D002550 3.9e-06 54.3 45 71.1
Duzib106G1136 Durio zibethinus HOM05D002435 ORTHO05D002550 5.1e-06 53.9 39 76.9
Thecc.05G180800 Theobroma cacao HOM05D002435 ORTHO05D002550 5.1e-06 53.9 35 82.9
TWI53G1217 Tripterygium wilfordii HOM05D002435 ORTHO05D002550 5.1e-06 53.9 39 76.9
TWI74G0885 Tripterygium wilfordii HOM05D002435 ORTHO05D002550 5.1e-06 53.9 38 78.9
TAR365G0796 Trochodendron aralioides HOM05D002435 ORTHO05D002550 5.1e-06 53.9 35 82.9
Cfa013302 Carpinus fangiana HOM05D002435 ORTHO05D002550 6.7e-06 53.5 35 82.9
AUR62003418 Chenopodium quinoa HOM05D002435 ORTHO05D002550 6.7e-06 53.5 43 69.8
Dinv25027 Davidia involucrata HOM05D002435 ORTHO05D002550 6.7e-06 53.5 35 82.9
Duzib093G1074 Durio zibethinus HOM05D002435 ORTHO05D002550 6.7e-06 53.5 45 71.1
FAN09G3331 Fragaria x ananassa HOM05D002435 ORTHO05D002550 6.7e-06 53.5 41 68.3
Gohir.A09G130900 Gossypium hirsutum HOM05D002435 ORTHO05D002550 6.7e-06 53.5 39 76.9
Gohir.D09G126800 Gossypium hirsutum HOM05D002435 ORTHO05D002550 6.7e-06 53.5 44 72.7
Gorai.006G145600 Gossypium raimondii HOM05D002435 ORTHO05D002550 6.7e-06 53.5 39 76.9
Gorai.006G145700 Gossypium raimondii HOM05D002435 ORTHO05D002550 6.7e-06 53.5 39 76.9
RcHm_v2.0_Chr3g0477971 Rosa chinensis HOM05D002435 ORTHO05D002550 6.7e-06 53.5 36 77.8
TWI77G0531 Tripterygium wilfordii HOM05D002435 ORTHO05D002550 6.7e-06 53.5 35 82.9
Actinidia25725 Actinidia chinensis HOM05D002435 ORTHO05D002550 8.8e-06 53.1 35 80.0
Cc00_g13220 Coffea canephora HOM05D002435 ORTHO05D002550 8.8e-06 53.1 39 74.4
Cc09_g05410 Coffea canephora HOM05D002435 ORTHO05D002550 8.8e-06 53.1 39 74.4
Lj2A360T41 Lonicera japonica HOM05D002435 ORTHO05D002550 8.8e-06 53.1 62 74.2
Nn1g08327 Nelumbo nucifera HOM05D002435 ORTHO05D002550 8.8e-06 53.1 35 80.0


User provided reference genes

Program Settings