Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0121900 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D009920 2.6e-283 978.4 625 100.0
Zm00001eb230400 Zea mays HOM05D000104 ORTHO05D009920 2.7e-184 649.4 613 68.0
Zm00001eb230460 Zea mays HOM05D000104 ORTHO05D009920 7.2e-68 262.7 437 48.7
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 4.7e-67 260.0 514 35.6
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 6.8e-66 256.1 514 38.3
Aqoxy5G03976 Aquilegia oxysepala HOM05D000104 ORTHO05D009920 1.3e-61 241.9 411 49.1
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 2.9e-61 240.7 409 38.6
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 1.9e-60 238.0 334 45.5
Cc02_g04950 Coffea canephora HOM05D000104 ORTHO05D009920 7.2e-60 236.1 633 33.5
ATR1089G041 Amborella trichopoda HOM05D000104 ORTHO05D009920 4.7e-59 233.4 336 44.3
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 1.2e-57 228.8 611 36.0
FAN03G1668 Fragaria x ananassa HOM05D000104 ORTHO05D009920 8.3e-56 222.6 325 47.4
Sed0002743 Sechium edule HOM05D000104 ORTHO05D009920 1.1e-55 222.2 333 37.8
Cpa.g.sc101.54 Carica papaya HOM05D000104 ORTHO05D009920 9.2e-55 219.2 296 40.2
RcHm_v2.0_Chr1g0346171 Rosa chinensis HOM05D000104 ORTHO05D009920 9.2e-55 219.2 454 41.2
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 3.5e-54 217.2 331 42.9
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 1.5e-52 211.8 335 49.0
FAN06G4216 Fragaria x ananassa HOM05D000104 ORTHO05D009920 1.9e-52 211.5 336 36.9
FvH4_7g09470 Fragaria vesca HOM05D000104 ORTHO05D009920 4.3e-52 210.3 336 36.6
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 1.2e-51 208.8 339 42.5
FAN06G4654 Fragaria x ananassa HOM05D000104 ORTHO05D009920 1.6e-51 208.4 336 36.6
Oeu024268.1 Olea europaea HOM05D000104 ORTHO05D009920 2.8e-51 207.6 611 31.4
Nn5g26955 Nelumbo nucifera HOM05D000104 ORTHO05D009920 3.6e-51 207.2 618 35.3
Ca_23477_v3 Cicer arietinum L. HOM05D000104 ORTHO05D009920 6.1e-51 206.5 327 43.7
arahy.Tifrunner.gnm1.ann1.JWX42Q Arachis hypogaea HOM05D000104 ORTHO05D009920 8.0e-51 206.1 335 47.8
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 6.8e-50 203.0 339 47.8
TWI14G0059 Tripterygium wilfordii HOM05D000447 ORTHO05D000315 1.2e-49 202.2 334 47.9
MBI04_g27244_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D009920 1.5e-49 201.8 614 39.3
TPR.G39133 Trifolium pratense HOM05D000104 ORTHO05D009920 1.5e-49 201.8 336 41.1
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 4.4e-49 200.3 336 46.1
Medtr7g044790 Medicago truncatula HOM05D000104 ORTHO05D009920 5.8e-49 199.9 329 39.8
FAN10G2081 Fragaria x ananassa HOM05D000104 ORTHO05D009920 7.5e-49 199.5 588 33.5
A04p29080 Brassica napus HOM05D000104 ORTHO05D009920 9.8e-49 199.1 602 37.9
Glyma.12G191600 Glycine max HOM05D000104 ORTHO05D009920 1.3e-48 198.7 608 36.5
FAN10G1160 Fragaria x ananassa HOM05D000104 ORTHO05D009920 3.7e-48 197.2 606 33.0
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 6.4e-48 196.4 606 35.8
MELO3C010518.2 Cucumis melo HOM05D000104 ORTHO05D009920 8.3e-48 196.1 333 45.9
HPP92_022001 Vanilla planifolia HOM05D000104 ORTHO05D009920 3.2e-47 194.1 213 49.8
SGA_v2.0_scaffold60G20860 Striga asiatica HOM05D000104 ORTHO05D009920 3.9e-45 187.2 605 33.7
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 8.6e-45 186.0 333 35.4
CARHR000280 Cardamine hirsuta HOM05D000104 ORTHO05D009920 2.1e-43 181.4 478 37.2
Haze_02747 Corylus avellana HOM05D000104 ORTHO05D009920 3.6e-43 180.6 293 37.2
Peaxi162Scf00073g00196 Petunia axillaris HOM05D000104 ORTHO05D009920 3.6e-43 180.6 344 36.3
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 4.0e-42 177.2 608 34.9
CiPaw.13G029800 Carya illinoinensis HOM05D000104 ORTHO05D009920 2.0e-41 174.9 287 35.2
Atru.chr5.193 Acer truncatum HOM05D000104 ORTHO05D009920 1.3e-40 172.2 410 45.1
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 1.3e-40 172.2 606 35.6
Potri.014G056400 Populus trichocarpa HOM05D000104 ORTHO05D009920 2.9e-40 171.0 548 38.1
BraA04t18379Z Brassica rapa HOM05D000104 ORTHO05D009920 4.9e-40 170.2 602 38.5
Carub.0001s0018 Capsella rubella HOM05D000104 ORTHO05D009920 4.1e-39 167.2 336 43.5
Sp1g00260 Schrenkiella parvula HOM05D000104 ORTHO05D009920 5.4e-39 166.8 332 38.0
CAN.G388.40 Capsicum annuum HOM05D000104 ORTHO05D009920 9.2e-39 166.0 340 37.4
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 1.6e-38 165.2 543 35.9
MD02G1218600 Malus domestica HOM05D000104 ORTHO05D009920 1.0e-37 162.5 333 43.5
AT1G02060 Arabidopsis thaliana HOM05D000104 ORTHO05D009920 2.3e-37 161.4 332 43.7
Lj1g0020796 Lotus japonicus HOM05D000104 ORTHO05D009920 5.1e-37 160.2 291 39.9
TAR629G2305 Trochodendron aralioides HOM05D000104 ORTHO05D009920 1.1e-36 159.1 335 38.2
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 5.6e-36 156.8 334 41.9
QL04p034761 Quercus lobata HOM05D000104 ORTHO05D009920 9.5e-36 156.0 335 35.8
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 9.5e-36 156.0 334 42.2
PGR004G2133 Punica granatum HOM05D000104 ORTHO05D009920 6.2e-35 153.3 370 32.7
DCAR_009464 Daucus carota HOM05D000104 ORTHO05D009920 6.8e-34 149.8 501 26.1
AL1G10230 Arabidopsis lyrata HOM05D000104 ORTHO05D009920 1.5e-33 148.7 332 42.2
PGSC0003DMG400005248 Solanum tuberosum HOM05D000104 ORTHO05D009920 2.0e-33 148.3 334 41.3
Sabra14G0041200 Salix brachista HOM05D000447 ORTHO05D000315 2.6e-33 147.9 430 31.4
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 4.4e-33 147.1 246 35.8
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 1.1e-31 142.5 333 39.6
Zm00001eb230370 Zea mays HOM05D000104 ORTHO05D009920 1.1e-31 142.5 231 61.5
SEGI_00408 Sequoiadendron giganteum HOM05D006740 ORTHO05D009920 4.1e-31 140.6 289 30.1
Lj1P971T48 Lonicera japonica HOM05D000104 ORTHO05D009920 2.7e-30 137.9 333 35.1
GSVIVG01031674001 Vitis vinifera HOM05D000104 ORTHO05D009920 3.9e-29 134.0 546 36.3
CsaV3_4G027960 Cucumis sativus L. HOM05D000104 ORTHO05D009920 1.1e-28 132.5 333 37.2
SEGI_40563 Sequoiadendron giganteum HOM05D006740 ORTHO05D009920 1.9e-28 131.7 247 31.6
Zm00001eb230320 Zea mays HOM05D000104 ORTHO05D009920 5.6e-28 130.2 169 63.3
TPR.G8342 Trifolium pratense HOM05D000104 ORTHO05D009920 9.6e-28 129.4 188 39.9
Thhalv10006939m.g Eutrema salsugineum HOM05D000104 ORTHO05D009920 1.2e-27 129.0 332 34.6
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 2.1e-27 128.3 553 27.1
C04p66310 Brassica napus HOM05D000104 ORTHO05D009920 3.4e-25 120.9 624 31.4
SalBow5G5686 Salvia bowleyana HOM05D000104 ORTHO05D009920 3.8e-24 117.5 250 39.2
ATR0048G002 Amborella trichopoda HOM05D006740 ORTHO05D008571 8.4e-24 116.3 342 25.4
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 4.6e-22 110.5 334 37.1
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 1.7e-21 108.6 393 32.1
MBI14_g24889_MAGBIO Magnolia biondii HOM05D006740 ORTHO05D008571 3.0e-21 107.8 294 26.9
Aa31LG1G11380 Aethionema arabicum HOM05D000104 ORTHO05D009920 8.7e-21 106.3 445 31.5
TPR.G25953 Trifolium pratense HOM05D000104 ORTHO05D009920 1.1e-18 99.4 163 55.2
COL.COLO4_12449 Corchorus olitorius HOM05D000447 ORTHO05D000315 1.4e-18 99.0 108 46.3
BolC4t28135H Brassica oleracea HOM05D000104 ORTHO05D009920 2.6e-17 94.7 427 36.5
THA.LOC104806598 Tarenaya hassleriana HOM05D006740 ORTHO05D008571 3.9e-13 80.9 242 24.8
Glyma.01G073500 Glycine max HOM05D000104 ORTHO05D009920 2.6e-09 68.2 339 32.2
Zm00001eb229640 Zea mays HOM05D006740 ORTHO05D008571 7.6e-09 66.6 292 21.9
Nn1g03712 Nelumbo nucifera HOM05D000001 ORTHO05D000003 2.4e-07 61.6 354 21.5
AUR62005166 Chenopodium quinoa HOM05D001413 ORTHO05D003288 9.3e-07 59.7 116 32.8
SEGI_25780 Sequoiadendron giganteum HOM05D006740 ORTHO05D008571 1.6e-06 58.9 139 27.3
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 2.1e-06 58.5 191 25.7
Sp3g13340 Schrenkiella parvula HOM05D000001 ORTHO05D000003 2.7e-06 58.2 194 24.2
Sopen12g006110 Solanum pennellii HOM05D002453 ORTHO05D008746 2.7e-06 58.2 108 33.3
A03p39170 Brassica napus HOM05D000001 ORTHO05D000003 3.5e-06 57.8 161 25.5
BraA03t13066Z Brassica rapa HOM05D000001 ORTHO05D000003 3.5e-06 57.8 161 25.5
TWI56G1159 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 3.5e-06 57.8 142 29.6
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 4.6e-06 57.4 275 21.1
Nn1g08193 Nelumbo nucifera HOM05D008810 ORTHO05D010971 4.6e-06 57.4 97 33.0
Solyc12g014330.1 Solanum lycopersicum HOM05D002453 ORTHO05D008746 4.6e-06 57.4 108 33.3
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 4.6e-06 57.4 74 37.8
Thhalv10022068m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 6.0e-06 57.0 194 23.7
TWI79G0835 Tripterygium wilfordii HOM05D000001 ORTHO05D010162 6.0e-06 57.0 139 28.8


User provided reference genes

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