Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 0.0e+00 1312.4 687 100.0
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 1.2e-233 813.5 530 76.8
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 3.4e-212 742.3 690 56.7
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 2.7e-209 732.6 688 54.2
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 2.8e-206 722.6 689 54.0
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 4.6e-201 705.3 684 53.4
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 2.3e-200 703.0 683 53.4
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 3.9e-200 702.2 682 52.5
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 5.1e-200 701.8 687 53.9
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 9.7e-199 697.6 686 53.8
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 9.7e-199 697.6 681 53.2
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 4.1e-197 692.2 681 53.0
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 5.3e-197 691.8 690 51.9
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 9.0e-197 691.0 683 53.1
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 4.5e-196 688.7 690 51.7
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 5.9e-196 688.3 683 52.6
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 7.7e-196 688.0 683 51.5
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 2.2e-195 686.4 681 52.3
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 2.2e-195 686.4 683 53.1
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 2.9e-195 686.0 686 52.9
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 5.0e-195 685.3 683 53.1
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 1.1e-194 684.1 683 52.4
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 4.2e-194 682.2 686 51.9
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 4.6e-193 678.7 688 52.2
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 4.6e-193 678.7 684 52.8
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 2.8e-190 669.5 681 51.1
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.0e-188 663.3 686 50.6
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 2.0e-188 663.3 684 50.6
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 5.9e-188 661.8 684 51.6
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 7.7e-188 661.4 680 51.3
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 1.0e-187 661.0 688 50.9
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 1.0e-187 661.0 686 51.5
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 1.7e-187 660.2 683 50.8
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 1.7e-187 660.2 688 51.9
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 3.8e-187 659.1 688 50.1
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 3.8e-187 659.1 681 51.1
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 8.5e-187 657.9 687 49.9
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 8.5e-187 657.9 684 51.3
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 8.5e-187 657.9 685 51.1
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 1.9e-186 656.8 684 49.7
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 1.9e-186 656.8 687 51.1
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.9e-186 656.8 687 50.7
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 3.2e-186 656.0 684 50.6
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 9.4e-186 654.4 687 50.1
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 2.1e-185 653.3 684 51.3
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 1.4e-184 650.6 684 50.1
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 2.3e-184 649.8 684 49.4
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 3.9e-184 649.0 685 50.2
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 6.7e-184 648.3 684 49.3
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 8.8e-184 647.9 683 50.1
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 1.5e-183 647.1 661 52.0
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 2.0e-183 646.7 692 51.2
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 2.0e-183 646.7 683 49.8
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 2.6e-183 646.4 687 49.9
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 2.6e-183 646.4 685 50.5
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 7.4e-183 644.8 683 49.3
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 9.7e-183 644.4 687 50.5
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 1.3e-182 644.0 688 50.3
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 1.7e-182 643.7 687 49.3
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.7e-182 642.5 687 49.5
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 4.8e-182 642.1 680 49.3
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 6.3e-182 641.7 672 51.3
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 1.4e-181 640.6 683 49.5
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 3.1e-181 639.4 685 49.9
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 5.3e-181 638.6 685 49.9
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 5.3e-181 638.6 684 48.8
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 9.1e-181 637.9 687 49.2
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 1.2e-180 637.5 685 49.8
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 1.2e-180 637.5 686 49.6
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 2.0e-180 636.7 685 49.1
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 2.0e-180 636.7 688 50.1
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 5.9e-180 635.2 682 49.0
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 1.0e-179 634.4 684 48.5
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 1.3e-179 634.0 688 49.7
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 1.3e-179 634.0 688 49.7
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 2.5e-178 629.8 686 48.4
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 7.2e-178 628.2 690 49.0
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 2.1e-177 626.7 684 48.2
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 1.0e-176 624.4 686 48.4
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 1.1e-175 620.9 706 46.7
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 1.5e-175 620.5 685 50.4
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 4.8e-174 615.5 686 48.3
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 6.3e-174 615.1 698 48.9
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 8.2e-174 614.8 684 48.7
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 4.5e-172 609.0 684 50.7
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 1.7e-171 607.1 691 47.9
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 1.1e-170 604.4 694 48.3
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 4.7e-169 599.0 683 47.0
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 2.3e-168 596.7 687 47.6
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 3.0e-168 596.3 684 47.2
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 4.0e-168 595.9 690 48.1
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 5.7e-167 592.0 683 45.7
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 7.5e-167 591.7 686 46.8
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 2.8e-166 589.7 690 50.0
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 2.2e-163 580.1 677 47.7
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 2.1e-161 573.5 694 46.3
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 8.6e-155 551.6 683 45.5
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 4.1e-149 532.7 687 44.1
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 3.0e-147 526.6 547 50.3
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.6e-143 513.5 495 54.5
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 6.4e-118 429.1 692 35.1
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 1.4e-117 427.9 448 51.8
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 4.3e-114 416.4 380 55.8
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 3.5e-108 396.7 513 42.7
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 1.5e-103 381.3 680 34.3
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 5.8e-103 379.4 661 38.7
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 3.8e-102 376.7 381 52.0
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 1.3e-91 341.7 683 32.7
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.4e-88 330.9 539 37.3
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 5.0e-86 323.2 386 44.8
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 9.4e-69 265.8 789 27.4
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 3.1e-64 250.8 295 44.7
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 3.3e-58 230.7 284 43.7
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 6.3e-57 226.5 739 26.9
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 5.4e-48 196.8 363 33.3
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 2.0e-42 178.3 284 38.7
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 2.0e-42 178.3 263 41.1
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 4.9e-41 173.7 272 39.3
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 2.9e-33 147.9 206 40.8
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 1.5e-29 135.6 81 70.4
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 1.0e-27 129.4 97 71.1
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 7.8e-23 113.2 110 47.3
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 5.6e-21 107.1 86 51.2
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 5.6e-21 107.1 127 47.2
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 4.7e-20 104.0 240 29.6
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 5.8e-18 97.1 232 29.3
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 9.8e-18 96.3 223 31.8
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.3e-17 95.9 164 36.6
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 7.8e-15 86.7 78 52.6
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 3.0e-14 84.7 78 52.6
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 1.1e-13 82.8 62 62.9
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.9e-13 82.0 76 52.6
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 5.4e-08 63.9 98 36.7
AagrBONN_evm.TU.Sc2ySwM_228.892 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.9e-06 57.8 126 28.6
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 6.6e-06 57.0 51 56.9


User provided reference genes

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