Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 2.9e-232 808.5 520 100.0
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 8.6e-107 391.7 526 50.2
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 2.3e-59 234.2 226 57.1
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.1e-58 231.9 221 60.6
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 1.9e-58 231.1 182 63.7
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 4.3e-58 229.9 215 59.5
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 5.6e-58 229.6 203 59.6
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 1.3e-57 228.4 273 49.8
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 6.2e-57 226.1 234 55.1
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 1.8e-56 224.6 188 62.8
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 2.4e-56 224.2 275 48.7
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 5.3e-56 223.0 280 49.3
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 6.9e-56 222.6 282 48.9
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.4e-55 220.3 182 62.6
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.4e-55 220.3 182 62.6
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 2.9e-54 217.2 184 60.9
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 3.8e-54 216.9 224 53.6
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 8.4e-54 215.7 183 59.6
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 3.2e-53 213.8 318 43.4
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 5.5e-53 213.0 205 54.1
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 9.3e-53 212.2 298 44.0
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 1.2e-52 211.8 273 44.0
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 4.6e-52 209.9 189 59.3
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 1.8e-51 208.0 203 54.2
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 3.9e-51 206.8 183 59.6
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 1.5e-50 204.9 209 52.6
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 1.9e-50 204.5 259 45.6
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 1.9e-50 204.5 283 44.9
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 2.5e-50 204.1 226 48.2
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 1.6e-49 201.4 312 40.7
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 2.1e-49 201.1 312 40.7
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 3.7e-49 200.3 278 45.7
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 6.3e-49 199.5 313 41.5
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 8.2e-49 199.1 328 40.5
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 1.1e-48 198.7 215 51.6
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 2.4e-48 197.6 290 42.1
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 6.9e-48 196.1 315 41.9
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 9.0e-48 195.7 233 47.2
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 3.4e-47 193.7 240 47.9
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 4.5e-47 193.4 348 39.9
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 5.9e-47 193.0 181 56.9
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 5.9e-47 193.0 226 49.1
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 7.6e-47 192.6 194 55.7
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 1.0e-46 192.2 261 45.2
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 1.0e-46 192.2 211 49.3
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 2.9e-46 190.7 224 46.0
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 1.4e-45 188.3 229 48.0
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 1.9e-45 188.0 311 40.2
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.9e-45 188.0 195 55.9
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 2.5e-45 187.6 201 50.7
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 2.5e-45 187.6 199 52.3
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 4.2e-45 186.8 228 50.9
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 7.2e-45 186.0 147 64.6
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 7.2e-45 186.0 294 41.2
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 9.3e-45 185.7 287 41.5
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 1.2e-44 185.3 294 41.5
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 3.6e-44 183.7 328 38.7
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 4.6e-44 183.3 211 52.1
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 6.1e-44 183.0 212 51.9
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.3e-43 181.8 218 47.7
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.3e-43 181.8 218 48.2
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 5.1e-43 179.9 328 38.4
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 2.8e-41 174.1 242 45.5
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 6.3e-41 172.9 185 51.9
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 8.2e-41 172.6 208 48.6
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 1.1e-40 172.2 153 56.9
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 1.4e-40 171.8 328 39.0
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 4.1e-40 170.2 258 38.4
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 4.1e-40 170.2 310 39.7
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 1.2e-39 168.7 205 46.8
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.2e-39 168.7 205 46.8
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 1.5e-39 168.3 231 45.9
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 2.6e-39 167.5 360 35.8
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 5.9e-39 166.4 313 37.4
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 1.0e-38 165.6 274 40.1
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.4e-37 161.8 205 46.3
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 2.5e-37 161.0 283 39.6
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 7.2e-37 159.5 168 52.4
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 6.1e-36 156.4 205 44.9
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 6.1e-36 156.4 226 44.2
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.1e-34 152.1 204 43.6
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 2.0e-34 151.4 263 39.5
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 9.7e-34 149.1 306 35.0
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 2.2e-33 147.9 222 40.5
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 2.8e-33 147.5 266 39.8
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 4.8e-33 146.7 213 44.1
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 6.3e-33 146.4 223 42.2
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 2.4e-32 144.4 242 40.9
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 3.1e-32 144.1 240 40.0
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 4.1e-32 143.7 187 47.6
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 9.1e-32 142.5 247 39.3
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 9.1e-32 142.5 247 39.3
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 9.1e-32 142.5 272 38.2
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 2.6e-31 141.0 247 38.9
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 2.6e-31 141.0 247 38.9
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 2.6e-31 141.0 247 38.9
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 7.7e-31 139.4 175 41.7
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 8.5e-30 136.0 143 51.0
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 8.5e-30 136.0 352 34.1
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.2e-28 132.1 183 42.6
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 7.9e-28 129.4 254 37.0
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 1.0e-27 129.0 189 45.0
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.1e-26 125.6 180 41.7
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 3.3e-26 124.0 354 31.6
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 6.3e-25 119.8 272 34.9
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 4.1e-24 117.1 93 61.3
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 2.2e-22 111.3 203 36.0
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 5.0e-22 110.2 203 35.5
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 2.1e-20 104.8 114 55.3
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 6.7e-19 99.8 306 32.0
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 5.7e-18 96.7 186 38.7
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 8.2e-17 92.8 320 29.1
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 1.8e-16 91.7 133 41.4
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 4.5e-15 87.0 101 47.5
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 8.5e-14 82.8 90 50.0
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 1.1e-13 82.4 93 49.5
Zm00001eb120040 Zea mays HOM05D028877 ORTHO05D006450 3.2e-13 80.9 51 76.5
Zm00001eb136510 Zea mays HOM05D028877 ORTHO05D006450 3.2e-13 80.9 51 76.5
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 4.2e-13 80.5 95 44.2
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 4.2e-13 80.5 204 30.4
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 5.5e-13 80.1 170 38.2
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.4e-11 75.5 272 27.6
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 4.0e-11 73.9 101 43.6
MD10G1126600 Malus domestica HOM05D005442 ORTHO05D006450 6.8e-11 73.2 82 50.0
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 2.6e-10 71.2 180 31.7
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 3.4e-10 70.9 121 36.4
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 7.5e-10 69.7 167 29.3
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 9.8e-10 69.3 140 38.6
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 9.8e-10 69.3 146 32.9
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 2.8e-09 67.8 128 35.2
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 6.3e-09 66.6 183 30.6
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 6.3e-09 66.6 59 49.2
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 5.4e-08 63.5 187 26.2
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 1.6e-07 62.0 187 26.7
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 2.0e-07 61.6 130 28.5
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 2.7e-07 61.2 179 27.4
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 3.5e-07 60.8 225 25.3
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 4.5e-07 60.5 199 28.6
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 4.5e-07 60.5 44 63.6
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 7.7e-07 59.7 169 27.2
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 1.0e-06 59.3 125 31.2
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 1.0e-06 59.3 123 31.7
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 1.0e-06 59.3 186 25.8
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 1.7e-06 58.5 180 24.4
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 1.7e-06 58.5 184 26.1
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 1.7e-06 58.5 177 27.1
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 1.7e-06 58.5 177 27.1
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 1.7e-06 58.5 177 27.1
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 2.2e-06 58.2 125 31.2
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 2.2e-06 58.2 125 30.4
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 2.9e-06 57.8 187 26.2
SEGI_12526 Sequoiadendron giganteum HOM05D005442 ORTHO05D006450 2.9e-06 57.8 42 59.5
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 2.9e-06 57.8 178 26.4
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 3.8e-06 57.4 179 26.8
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 5.0e-06 57.0 178 27.0
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 5.0e-06 57.0 170 28.2
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 5.0e-06 57.0 123 30.1
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 5.0e-06 57.0 180 25.6
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 6.5e-06 56.6 126 34.1
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 6.5e-06 56.6 198 22.7
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 6.5e-06 56.6 181 25.4
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 6.5e-06 56.6 184 26.6
Actinidia39161 Actinidia chinensis HOM05D005442 ORTHO05D006450 8.5e-06 56.2 149 36.2
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 8.5e-06 56.2 125 28.8
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 8.5e-06 56.2 198 22.7
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 8.5e-06 56.2 189 26.5


User provided reference genes

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