Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 7.4e-98 360.5 181 100.0
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 2.8e-81 305.4 181 84.0
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 3.7e-65 251.9 179 68.2
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 4.8e-65 251.5 176 68.2
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 6.3e-65 251.1 179 67.6
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 1.2e-63 246.9 178 65.2
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 7.7e-63 244.2 178 66.3
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 1.3e-62 243.4 180 64.4
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 1.3e-62 243.4 181 67.4
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 2.2e-62 242.7 179 65.9
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 2.2e-62 242.7 179 67.6
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 6.5e-62 241.1 178 63.5
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 1.5e-61 240.0 176 64.8
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 1.5e-61 240.0 179 64.8
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 2.5e-61 239.2 179 65.4
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 4.2e-61 238.4 177 65.5
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 4.2e-61 238.4 176 65.9
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 4.2e-61 238.4 179 64.2
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 4.2e-61 238.4 177 65.5
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 5.5e-61 238.0 200 60.0
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 5.5e-61 238.0 178 64.6
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 7.2e-61 237.7 181 63.0
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 2.1e-60 236.1 178 65.2
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 3.6e-60 235.3 178 61.8
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 4.7e-60 235.0 178 65.2
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 6.1e-60 234.6 178 64.0
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 1.0e-59 233.8 177 65.0
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 1.0e-59 233.8 180 63.3
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.8e-59 233.0 178 64.6
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 2.3e-59 232.6 180 62.8
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 2.3e-59 232.6 180 62.8
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 2.3e-59 232.6 179 62.0
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 2.3e-59 232.6 177 65.5
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 3.0e-59 232.3 178 61.8
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 3.0e-59 232.3 178 61.8
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 4.0e-59 231.9 178 62.9
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 4.0e-59 231.9 179 64.2
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 5.2e-59 231.5 177 65.0
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 5.2e-59 231.5 178 62.4
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 5.2e-59 231.5 178 62.9
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 5.2e-59 231.5 176 63.6
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 6.7e-59 231.1 178 61.2
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 6.7e-59 231.1 179 63.7
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 6.7e-59 231.1 176 64.8
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 8.8e-59 230.7 178 63.5
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 1.5e-58 229.9 178 62.4
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 2.6e-58 229.2 178 62.4
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 2.6e-58 229.2 180 62.2
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 3.3e-58 228.8 178 61.2
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 3.3e-58 228.8 178 61.2
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 3.3e-58 228.8 178 61.8
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 4.4e-58 228.4 178 60.7
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 4.4e-58 228.4 179 63.1
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 5.7e-58 228.0 178 61.8
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 7.5e-58 227.6 178 61.8
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 1.3e-57 226.9 181 63.5
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 1.3e-57 226.9 178 60.7
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 1.7e-57 226.5 180 63.9
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 1.7e-57 226.5 178 62.9
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 2.8e-57 225.7 178 61.8
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 3.7e-57 225.3 178 60.1
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 4.8e-57 224.9 174 60.9
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 6.3e-57 224.6 154 69.5
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 8.3e-57 224.2 178 61.2
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 1.1e-56 223.8 178 61.8
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.1e-56 223.8 179 60.9
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 1.4e-56 223.4 177 62.7
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 2.4e-56 222.6 179 61.5
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 2.4e-56 222.6 177 61.0
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 3.1e-56 222.2 180 60.6
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 7.0e-56 221.1 179 60.3
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 1.2e-55 220.3 180 60.6
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 4.5e-55 218.4 176 62.5
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 1.0e-54 217.2 176 61.4
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 1.0e-54 217.2 178 59.6
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 1.0e-54 217.2 163 65.0
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 1.7e-54 216.5 168 64.9
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 1.7e-54 216.5 168 64.9
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 2.2e-54 216.1 178 59.0
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 2.9e-54 215.7 178 60.1
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 6.5e-54 214.5 178 59.6
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 1.9e-53 213.0 177 59.9
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 2.5e-53 212.6 177 59.9
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 2.5e-53 212.6 178 59.0
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 6.1e-52 208.0 178 60.1
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 8.0e-52 207.6 177 59.3
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 1.0e-51 207.2 178 59.0
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 3.0e-51 205.7 179 58.7
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 3.4e-50 202.2 158 62.7
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 3.4e-50 202.2 176 58.0
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 4.4e-50 201.8 187 54.5
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 4.4e-50 201.8 161 60.9
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 2.8e-49 199.1 178 57.9
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 2.0e-47 193.0 177 55.9
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 7.7e-47 191.0 159 57.9
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 9.8e-42 174.1 182 51.1
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 2.0e-39 166.4 178 48.9
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 5.9e-39 164.9 178 46.6
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 6.1e-36 154.8 176 46.0
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 8.0e-36 154.5 115 67.0
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 1.7e-33 146.7 194 44.3
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 1.7e-30 136.7 210 39.5
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 8.9e-27 124.4 193 43.0
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 2.6e-26 122.9 101 56.4
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 9.8e-26 120.9 105 56.2
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 2.4e-24 116.3 179 39.1
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 5.1e-22 108.6 74 68.9
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 2.5e-21 106.3 120 50.0
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 8.1e-20 101.3 74 67.6
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 6.8e-19 98.2 75 66.7
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 1.1e-16 90.9 75 62.7
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.1e-13 80.9 67 61.2
COL.COLO4_14919 Corchorus olitorius HOM05D002933 ORTHO05D007742 2.1e-07 60.1 115 29.6
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 1.3e-06 57.4 117 29.9


User provided reference genes

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