Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 6.7e-133 477.6 293 100.0
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 2.2e-91 339.7 296 68.9
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 8.3e-67 258.1 181 74.0
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 1.1e-66 257.7 181 74.6
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 1.4e-66 257.3 189 72.0
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 2.4e-66 256.5 186 71.0
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 2.4e-66 256.5 197 70.1
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 2.4e-66 256.5 190 71.1
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 4.1e-66 255.8 181 73.5
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 4.1e-66 255.8 201 68.7
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 2.7e-65 253.1 186 71.5
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 3.5e-65 252.7 181 72.4
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 4.6e-65 252.3 192 67.2
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 6.0e-65 251.9 185 73.0
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 7.8e-65 251.5 205 67.8
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 1.0e-64 251.1 200 68.5
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 1.7e-64 250.4 195 69.2
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 3.0e-64 249.6 183 71.6
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 3.9e-64 249.2 178 74.2
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 5.1e-64 248.8 217 66.4
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 8.6e-64 248.1 186 72.0
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 1.5e-63 247.3 186 72.0
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 1.5e-63 247.3 183 71.6
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 1.5e-63 247.3 181 72.4
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 1.9e-63 246.9 181 71.8
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 2.5e-63 246.5 201 67.7
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 2.5e-63 246.5 183 71.0
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 4.3e-63 245.7 224 63.8
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 4.3e-63 245.7 179 73.2
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 7.3e-63 245.0 216 61.1
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 2.1e-62 243.4 191 67.0
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 2.1e-62 243.4 207 65.7
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 2.1e-62 243.4 204 64.7
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 2.8e-62 243.0 216 60.6
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 2.8e-62 243.0 181 70.7
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 3.6e-62 242.7 185 68.6
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 6.2e-62 241.9 186 70.4
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 6.2e-62 241.9 186 71.0
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 6.2e-62 241.9 227 63.0
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 1.1e-61 241.1 186 69.4
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.4e-61 240.7 180 70.0
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 1.8e-61 240.4 196 65.8
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 2.4e-61 240.0 186 69.9
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 6.8e-61 238.4 181 69.6
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 8.9e-61 238.0 235 58.7
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 2.6e-60 236.5 183 67.8
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 3.4e-60 236.1 186 67.7
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 4.4e-60 235.7 186 67.2
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 1.3e-59 234.2 210 65.2
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 4.9e-59 232.3 181 67.4
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 1.1e-58 231.1 181 66.3
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 1.9e-58 230.3 180 68.3
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 9.2e-58 228.0 193 66.8
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 9.2e-58 228.0 180 67.8
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 3.5e-57 226.1 183 63.9
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 4.6e-57 225.7 184 64.7
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 1.0e-56 224.6 227 56.8
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 1.3e-56 224.2 187 62.6
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 1.7e-56 223.8 173 68.8
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 2.3e-56 223.4 186 62.4
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 2.3e-56 223.4 183 63.4
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 3.9e-56 222.6 184 64.1
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.5e-55 220.7 170 67.6
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 1.9e-55 220.3 175 65.7
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 2.5e-55 219.9 187 62.0
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 2.5e-55 219.9 169 68.0
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 3.3e-55 219.5 187 62.0
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 3.3e-55 219.5 187 62.0
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 3.3e-55 219.5 187 62.0
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 3.3e-55 219.5 170 67.1
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 4.3e-55 219.2 186 60.2
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 5.6e-55 218.8 183 61.7
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 5.6e-55 218.8 172 66.3
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 5.8e-52 208.8 170 64.1
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 7.6e-52 208.4 205 55.6
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 8.4e-51 204.9 156 64.1
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 1.1e-50 204.5 165 63.6
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 5.4e-50 202.2 158 67.1
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 9.3e-50 201.4 179 62.6
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 9.3e-50 201.4 195 60.5
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 2.7e-49 199.9 169 60.9
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 1.1e-47 194.5 148 70.3
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 1.5e-47 194.1 149 67.1
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 2.5e-47 193.4 203 54.2
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 7.3e-47 191.8 149 67.8
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 4.8e-46 189.1 149 65.8
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 6.2e-46 188.7 151 65.6
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 6.2e-46 188.7 217 52.5
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 4.5e-44 182.6 216 50.5
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 1.1e-42 177.9 152 63.2
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 4.2e-42 176.0 176 58.0
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 5.4e-42 175.6 204 50.0
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.8e-38 163.3 172 55.2
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 2.4e-37 160.2 183 52.5
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 3.4e-36 156.4 175 53.1
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.0e-35 154.8 138 59.4
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 4.9e-35 152.5 183 48.1
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 8.4e-35 151.8 166 56.0
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.1e-34 151.4 124 65.3
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 2.8e-30 136.7 104 66.3
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 4.8e-30 136.0 142 54.2
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 1.3e-27 127.9 133 55.6
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 7.1e-26 122.1 88 78.4
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 2.3e-24 117.1 185 41.6
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 5.1e-24 115.9 88 65.9
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 1.5e-23 114.4 145 50.3
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 2.5e-23 113.6 92 63.0
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.1e-21 108.2 88 67.0
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 4.1e-21 106.3 145 49.7
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 5.3e-21 105.9 183 40.4
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 2.0e-20 104.0 77 68.8
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 1.6e-17 94.4 66 69.7
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 4.6e-17 92.8 119 46.2
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 1.8e-16 90.9 86 59.3
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 2.5e-15 87.0 73 71.2
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 1.8e-13 80.9 65 67.7
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 3.4e-12 76.6 66 57.6
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 4.5e-12 76.3 68 55.9
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 2.7e-09 67.0 104 37.5
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 1.8e-08 64.3 47 61.7
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 2.3e-08 63.9 43 72.1
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 8.8e-08 62.0 52 61.5
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 3.3e-07 60.1 80 45.0


User provided reference genes

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