Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 3.3e-98 361.7 179 100.0
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 2.9e-54 215.7 170 64.1
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 2.4e-48 196.1 167 61.1
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 2.4e-48 196.1 167 59.9
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 9.0e-48 194.1 166 61.4
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 9.0e-48 194.1 168 60.7
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 1.2e-47 193.7 164 61.0
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 1.2e-47 193.7 167 59.9
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 1.2e-47 193.7 167 59.9
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 2.0e-47 193.0 170 57.1
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 5.9e-47 191.4 167 59.3
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.0e-46 190.7 168 59.5
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 1.7e-46 189.9 166 60.2
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 2.9e-46 189.1 167 58.7
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 6.5e-46 188.0 172 57.0
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 8.5e-46 187.6 177 56.5
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 1.1e-45 187.2 168 58.3
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 1.9e-45 186.4 164 57.9
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 3.2e-45 185.7 166 57.8
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 3.2e-45 185.7 177 55.4
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 4.2e-45 185.3 164 58.5
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 5.5e-45 184.9 177 55.4
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 1.2e-44 183.7 164 57.3
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 1.6e-44 183.3 164 57.9
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 1.6e-44 183.3 167 55.7
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 1.6e-44 183.3 166 57.8
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 2.1e-44 183.0 148 64.2
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 2.7e-44 182.6 167 55.7
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 2.7e-44 182.6 167 57.5
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 4.6e-44 181.8 167 58.1
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 4.6e-44 181.8 167 55.7
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 7.9e-44 181.0 167 56.9
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 7.9e-44 181.0 167 56.9
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 1.4e-43 180.3 164 56.7
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 2.3e-43 179.5 145 62.8
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 3.0e-43 179.1 164 58.5
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 3.9e-43 178.7 165 56.4
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 5.1e-43 178.3 164 57.3
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 6.7e-43 177.9 168 56.0
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 8.8e-43 177.6 165 57.0
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 1.1e-42 177.2 145 62.8
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 1.1e-42 177.2 164 55.5
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 4.3e-42 175.3 168 54.8
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 4.3e-42 175.3 167 55.7
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 5.7e-42 174.9 165 57.6
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 1.3e-41 173.7 168 56.0
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 1.7e-41 173.3 156 57.1
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 2.2e-41 172.9 165 54.5
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 2.2e-41 172.9 167 55.7
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 2.8e-41 172.6 165 53.9
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 2.8e-41 172.6 156 57.1
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 2.8e-41 172.6 156 57.1
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 3.7e-41 172.2 164 54.9
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 4.8e-41 171.8 168 54.2
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 8.2e-41 171.0 157 56.1
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 1.4e-40 170.2 165 55.2
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-40 169.9 167 53.3
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.4e-40 169.5 166 53.6
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 4.1e-40 168.7 165 54.5
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 5.3e-40 168.3 165 55.2
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 9.1e-40 167.5 168 53.6
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 1.2e-39 167.2 176 52.3
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 1.2e-39 167.2 107 76.6
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 2.6e-39 166.0 147 59.9
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 4.5e-39 165.2 146 60.3
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 5.9e-39 164.9 146 60.3
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 5.9e-39 164.9 146 60.3
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 5.9e-39 164.9 156 54.5
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 5.9e-39 164.9 142 61.3
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 5.9e-39 164.9 167 53.3
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 5.9e-39 164.9 164 53.7
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 7.7e-39 164.5 142 62.0
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 7.7e-39 164.5 142 62.0
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 7.7e-39 164.5 142 62.0
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 7.7e-39 164.5 165 52.7
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 1.0e-38 164.1 144 61.1
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 1.0e-38 164.1 146 57.5
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 1.0e-38 164.1 202 46.0
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.3e-38 163.7 153 57.5
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 1.3e-38 163.7 142 61.3
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 1.3e-38 163.7 164 54.9
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 1.3e-38 163.7 142 62.0
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 1.3e-38 163.7 167 48.5
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 1.7e-38 163.3 142 62.0
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 1.7e-38 163.3 142 62.0
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 5.0e-38 161.8 153 55.6
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 6.5e-38 161.4 164 53.7
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 6.5e-38 161.4 151 56.3
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 1.1e-37 160.6 146 58.2
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 9.4e-37 157.5 142 58.5
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 7.9e-36 154.5 167 49.7
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.1e-34 150.6 168 51.2
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 2.6e-34 149.4 171 50.3
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 9.7e-34 147.5 180 48.9
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 1.3e-33 147.1 125 60.8
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 1.7e-33 146.7 151 50.3
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 2.2e-33 146.4 180 48.3
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 4.8e-33 145.2 164 51.2
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 1.5e-31 140.2 120 61.7
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 1.7e-30 136.7 152 48.7
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 6.5e-30 134.8 170 41.2
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 3.6e-28 129.0 118 55.9
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 3.0e-27 125.9 185 39.5
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 4.8e-25 118.6 164 39.6
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 4.1e-24 115.5 160 42.5
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 4.5e-23 112.1 169 37.9
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 7.7e-23 111.3 117 47.9
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 1.0e-22 110.9 103 56.3
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-22 108.6 141 42.6
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-21 106.7 155 41.9
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 4.2e-21 105.5 182 34.6
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 5.5e-21 105.1 173 39.9
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 7.2e-21 104.8 146 42.5
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 8.0e-20 101.3 179 35.2
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 8.8e-19 97.8 176 35.2
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-18 97.1 165 40.0
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 2.6e-18 96.3 170 37.6
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 3.7e-17 92.4 139 38.1
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 4.1e-16 89.0 152 37.5
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 5.4e-16 88.6 192 31.8
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 5.4e-16 88.6 114 47.4
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.7e-15 86.3 166 31.9
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 3.5e-15 85.9 72 58.3
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 1.0e-14 84.3 176 31.2
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 5.5e-13 78.6 72 58.3
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 7.2e-13 78.2 145 33.8
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 9.4e-13 77.8 71 56.3
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 8.0e-12 74.7 133 34.6
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 8.0e-12 74.7 102 40.2
Atru.chr1.4019 Acer truncatum HOM05D002880 ORTHO05D005623 6.8e-11 71.6 116 37.9
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-10 70.9 104 35.6
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-10 70.9 143 30.1
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-09 67.4 119 29.4
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 2.8e-09 66.2 141 30.5
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-08 64.3 100 35.0
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 1.4e-08 63.9 48 66.7
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 2.4e-08 63.2 111 34.2
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 4.1e-08 62.4 141 29.8
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 5.4e-08 62.0 106 38.7
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 7.0e-08 61.6 127 31.5
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-07 60.5 132 28.8
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 5.9e-07 58.5 119 31.1
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 5.9e-07 58.5 141 24.8
Atru.chr8.1290 Acer truncatum HOM05D004737 ORTHO05D005623 7.7e-07 58.2 101 29.7
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 3.8e-06 55.8 144 26.4


User provided reference genes

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