Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 2.2e-106 389.0 205 100.0
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 3.6e-48 195.7 163 61.3
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 7.9e-48 194.5 202 50.5
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 1.0e-47 194.1 207 50.2
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 1.4e-47 193.7 163 60.7
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 2.0e-46 189.9 164 59.1
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 2.6e-46 189.5 167 57.5
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 4.4e-46 188.7 207 49.8
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 4.4e-46 188.7 209 48.3
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 4.4e-46 188.7 209 50.7
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 7.4e-46 188.0 163 58.3
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 7.4e-46 188.0 209 50.2
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 9.7e-46 187.6 185 50.8
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 9.7e-46 187.6 180 55.0
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 1.3e-45 187.2 167 56.9
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 2.8e-45 186.0 199 50.8
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 3.7e-45 185.7 199 48.7
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 3.7e-45 185.7 209 49.3
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 3.7e-45 185.7 204 48.0
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 3.7e-45 185.7 204 48.0
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 3.7e-45 185.7 164 54.9
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 4.8e-45 185.3 200 50.5
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 6.3e-45 184.9 170 55.3
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 8.2e-45 184.5 172 53.5
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 1.1e-44 184.1 167 55.7
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 3.1e-44 182.6 167 56.9
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 3.1e-44 182.6 167 56.9
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 3.1e-44 182.6 204 50.5
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 6.9e-44 181.4 165 55.2
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 6.9e-44 181.4 208 48.6
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 1.2e-43 180.6 206 48.1
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 1.5e-43 180.3 164 53.0
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 2.6e-43 179.5 158 57.0
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 3.4e-43 179.1 180 50.0
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 3.4e-43 179.1 164 57.3
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 3.4e-43 179.1 194 50.5
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 3.4e-43 179.1 144 60.4
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 4.5e-43 178.7 199 46.7
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 5.9e-43 178.3 167 55.1
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 5.9e-43 178.3 163 53.4
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 7.7e-43 177.9 197 49.2
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 1.3e-42 177.2 163 54.0
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 1.3e-42 177.2 195 48.2
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 1.7e-42 176.8 167 55.1
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 2.9e-42 176.0 167 52.1
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 2.9e-42 176.0 167 52.7
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 2.9e-42 176.0 163 53.4
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 3.8e-42 175.6 165 51.5
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 3.8e-42 175.6 165 56.4
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 3.8e-42 175.6 164 51.8
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 3.8e-42 175.6 197 48.7
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 5.0e-42 175.3 165 52.7
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 6.5e-42 174.9 165 52.7
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 6.5e-42 174.9 201 47.3
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 6.5e-42 174.9 167 53.3
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 6.5e-42 174.9 195 47.7
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 8.5e-42 174.5 171 53.8
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 8.5e-42 174.5 167 53.9
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 8.5e-42 174.5 164 53.7
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 1.1e-41 174.1 165 51.5
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 2.5e-41 172.9 201 46.8
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 3.2e-41 172.6 172 50.6
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 5.5e-41 171.8 165 52.1
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 5.5e-41 171.8 163 53.4
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 7.2e-41 171.4 195 46.2
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 7.2e-41 171.4 165 51.5
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 1.2e-40 170.6 164 53.7
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 1.2e-40 170.6 164 52.4
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 1.6e-40 170.2 167 50.9
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 2.1e-40 169.9 171 49.7
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 2.7e-40 169.5 165 54.5
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 3.6e-40 169.1 158 51.9
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 6.1e-40 168.3 165 50.9
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 7.9e-40 167.9 168 52.4
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 1.4e-39 167.2 166 50.6
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 1.8e-39 166.8 162 52.5
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 1.8e-39 166.8 177 49.7
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 2.3e-39 166.4 200 46.0
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 3.9e-39 165.6 165 48.5
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 5.2e-39 165.2 167 52.1
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 8.8e-39 164.5 167 51.5
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 1.1e-38 164.1 167 51.5
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 7.4e-38 161.4 208 44.2
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 2.2e-37 159.8 159 52.2
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 2.2e-37 159.8 168 51.2
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 1.1e-36 157.5 197 46.2
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 1.2e-35 154.1 165 50.9
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 2.6e-35 152.9 177 48.0
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 7.7e-35 151.4 174 45.4
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 7.7e-35 151.4 161 47.2
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 2.2e-34 149.8 149 51.7
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 3.8e-34 149.1 164 47.6
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 6.5e-34 148.3 198 43.9
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 6.5e-34 148.3 170 48.2
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 7.2e-33 144.8 165 47.9
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 7.2e-33 144.8 116 62.9
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 1.2e-32 144.1 168 45.2
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 1.6e-32 143.7 167 44.9
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.6e-32 143.7 167 44.9
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.6e-32 143.7 167 44.9
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 2.7e-32 142.9 164 48.2
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 6.1e-32 141.7 109 63.3
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 8.0e-32 141.4 159 47.2
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 1.0e-31 141.0 167 44.9
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 1.0e-31 141.0 167 44.3
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 1.8e-31 140.2 167 44.3
Duzib160G0019 Durio zibethinus HOM05D005732 ORTHO05D007062 1.8e-31 140.2 132 53.0
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 2.3e-31 139.8 164 47.0
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 2.3e-31 139.8 167 44.3
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 2.3e-31 139.8 166 45.8
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 5.2e-31 138.7 167 44.3
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 8.8e-31 137.9 167 43.1
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 2.0e-30 136.7 167 44.9
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 3.3e-30 136.0 167 44.3
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 3.3e-30 136.0 167 44.3
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 3.3e-30 136.0 185 41.6
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 5.7e-30 135.2 185 42.7
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 5.7e-30 135.2 167 45.5
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 5.7e-30 135.2 163 44.8
Prupe.3G065500 Prunus persica HOM05D005732 ORTHO05D007062 7.5e-30 134.8 115 59.1
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 9.7e-30 134.4 166 43.4
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 9.7e-30 134.4 166 43.4
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 2.2e-29 133.3 167 44.3
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 2.8e-29 132.9 167 43.7
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 3.7e-29 132.5 162 43.8
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 1.8e-28 130.2 168 39.9
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 1.8e-28 130.2 163 44.2
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 7.0e-28 128.3 179 42.5
CDE02G4152 Ceratophyllum demersum HOM05D005732 ORTHO05D007062 1.2e-24 117.5 155 41.3
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 1.2e-22 110.9 167 41.9
ClCG09G000040 Citrullus lanatus HOM05D005732 ORTHO05D007062 1.5e-17 94.0 96 51.0
ATR0705G087 Amborella trichopoda HOM05D005732 ORTHO05D007062 4.7e-16 89.0 63 71.4
vmacro17018 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 4.7e-16 89.0 104 38.5
ATR0705G122 Amborella trichopoda HOM05D005732 ORTHO05D007062 6.1e-16 88.6 89 48.3
CARHR074750 Cardamine hirsuta HOM05D005732 ORTHO05D007062 5.4e-12 75.5 70 58.6
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 7.0e-12 75.1 77 49.4
Dinv30452 Davidia involucrata HOM05D005732 ORTHO05D007062 2.3e-10 70.1 120 38.3
SMO220G0003 Selaginella moellendorffii HOM05D002232 ORTHO05D002323 3.8e-10 69.3 185 30.8
Aqoxy4G02713 Aquilegia oxysepala HOM05D001228 ORTHO05D003869 8.9e-07 58.2 195 27.7
CARHR049040 Cardamine hirsuta HOM05D005732 ORTHO05D007062 1.2e-06 57.8 40 65.0
DCAR_028890 Daucus carota HOM05D001228 ORTHO05D003869 2.0e-06 57.0 161 29.8
DCAR_028892 Daucus carota HOM05D001228 ORTHO05D003869 2.0e-06 57.0 161 29.8
HanXRQChr16g0516411 Helianthus annuus HOM05D002232 ORTHO05D002323 2.6e-06 56.6 146 32.2
SEGI_26621 Sequoiadendron giganteum HOM05D005509 ORTHO05D006411 2.6e-06 56.6 118 30.5
SMO367G0421 Selaginella moellendorffii HOM05D002464 ORTHO05D002530 3.4e-06 56.2 112 31.2
Sc15g0002000 Simmondsia chinensis HOM05D005732 ORTHO05D007062 7.5e-06 55.1 40 67.5
Zm00001eb240120 Zea mays HOM05D002464 ORTHO05D002530 9.8e-06 54.7 122 36.1


User provided reference genes

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