Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0672700 Oryza sativa ssp. japonica HOM05D004367 ORTHO05D004937 3.8e-144 515.0 293 100.0
Zm00001eb157140 Zea mays HOM05D004367 ORTHO05D004937 1.3e-48 197.6 245 53.5
Manes.03G110700 Manihot esculenta HOM05D004367 ORTHO05D004937 8.4e-27 125.2 137 52.6
HPP92_008014 Vanilla planifolia HOM05D004367 ORTHO05D004937 3.0e-24 116.7 136 48.5
Prupe.4G182900 Prunus persica HOM05D004367 ORTHO05D004937 5.1e-24 115.9 136 51.5
PGR083G2352 Punica granatum HOM05D004367 ORTHO05D004937 8.7e-24 115.2 180 42.8
Dinv04310 Davidia involucrata HOM05D004367 ORTHO05D004937 1.5e-23 114.4 148 47.3
MD03G1226500 Malus domestica HOM05D004367 ORTHO05D004937 3.3e-23 113.2 133 53.4
Gohir.A01G064120 Gossypium hirsutum HOM05D004367 ORTHO05D004937 5.7e-23 112.5 129 51.9
Gohir.D01G051200 Gossypium hirsutum HOM05D004367 ORTHO05D004937 7.4e-23 112.1 129 51.9
TAR624G0790 Trochodendron aralioides HOM05D004367 ORTHO05D004937 7.4e-23 112.1 170 38.8
Psat5g242760 Pisum sativum HOM05D004367 ORTHO05D004937 9.7e-23 111.7 163 44.2
Atru.chr2.2651 Acer truncatum HOM05D004367 ORTHO05D004937 1.3e-22 111.3 130 50.8
Cpa.g.sc80.55 Carica papaya HOM05D004367 ORTHO05D004937 3.7e-22 109.8 139 46.8
Gorai.002G071000 Gossypium raimondii HOM05D004367 ORTHO05D004937 6.3e-22 109.0 129 51.2
Lj3g0015758 Lotus japonicus HOM05D004367 ORTHO05D004937 8.2e-22 108.6 146 47.9
Atru.chr2.2673 Acer truncatum HOM05D004367 ORTHO05D004937 1.1e-21 108.2 153 45.8
Hma1.2p1_0480F.1_g161800 Hydrangea macrophylla HOM05D004367 ORTHO05D004937 1.1e-21 108.2 131 50.4
Lsat_1_v5_gn_5_127821 Lactuca sativa HOM05D004367 ORTHO05D004937 1.1e-21 108.2 128 48.4
arahy.Tifrunner.gnm1.ann1.6ZWE2K Arachis hypogaea HOM05D004367 ORTHO05D004937 2.4e-21 107.1 149 43.0
Ciclev10008024m.g Citrus clementina HOM05D004367 ORTHO05D004937 2.4e-21 107.1 169 43.8
Hma1.2p1_2210F.1_g317160 Hydrangea macrophylla HOM05D004367 ORTHO05D004937 2.4e-21 107.1 128 49.2
Potri.001G400800 Populus trichocarpa HOM05D004367 ORTHO05D004937 2.4e-21 107.1 155 42.6
Actinidia12812 Actinidia chinensis HOM05D004367 ORTHO05D004937 3.1e-21 106.7 164 43.3
Medtr2g079330 Medicago truncatula HOM05D004367 ORTHO05D004937 3.1e-21 106.7 128 46.1
GSVIVG01014349001 Vitis vinifera HOM05D004367 ORTHO05D004937 3.1e-21 106.7 128 46.9
arahy.Tifrunner.gnm1.ann1.SV3A8G Arachis hypogaea HOM05D004367 ORTHO05D004937 4.1e-21 106.3 149 43.0
Hund22921 Selenicereus undatus HOM05D004367 ORTHO05D004937 4.1e-21 106.3 129 46.5
TWI38G0759 Tripterygium wilfordii HOM05D004367 ORTHO05D004937 6.9e-21 105.5 171 43.9
Sabra16G0262900 Salix brachista HOM05D004367 ORTHO05D004937 9.0e-21 105.1 136 44.9
Thecc.07G087300 Theobroma cacao HOM05D004367 ORTHO05D004937 9.0e-21 105.1 132 47.7
Cfa020594 Carpinus fangiana HOM05D004367 ORTHO05D004937 1.2e-20 104.8 145 44.1
AUR62029381 Chenopodium quinoa HOM05D004367 ORTHO05D004937 1.2e-20 104.8 134 49.3
CSS0040505 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 1.5e-20 104.4 168 41.7
HanXRQChr12g0361521 Helianthus annuus HOM05D004367 ORTHO05D004937 1.5e-20 104.4 128 47.7
FAN25G3266 Fragaria x ananassa HOM05D004367 ORTHO05D004937 2.0e-20 104.0 130 46.9
MBI07_g32654_MAGBIO Magnolia biondii HOM05D004367 ORTHO05D004937 2.0e-20 104.0 131 45.8
MD11G1244500 Malus domestica HOM05D004367 ORTHO05D004937 2.0e-20 104.0 136 49.3
Rhsim06G0197900 Rhododendron simsii HOM05D004367 ORTHO05D004937 2.0e-20 104.0 161 44.1
TWI39G0928 Tripterygium wilfordii HOM05D004367 ORTHO05D004937 2.0e-20 104.0 177 42.9
FAN16G0302 Fragaria x ananassa HOM05D004367 ORTHO05D004937 2.6e-20 103.6 130 46.2
Duzib213G0391 Durio zibethinus HOM05D004367 ORTHO05D004937 3.4e-20 103.2 129 48.1
Eucgr.F01119 Eucalyptus grandis HOM05D004367 ORTHO05D004937 3.4e-20 103.2 150 43.3
SGA_v2.0_scaffold73G24268 Striga asiatica HOM05D004367 ORTHO05D004937 3.4e-20 103.2 171 42.7
Lalb_Chr25g0286441 Lupinus albus HOM05D004367 ORTHO05D004937 5.9e-20 102.4 129 44.2
Sed0004687 Sechium edule HOM05D004367 ORTHO05D004937 5.9e-20 102.4 151 45.0
PSO210G1788 Papaver somniferum HOM05D004367 ORTHO05D004937 7.7e-20 102.1 156 42.9
ClCG11G018120 Citrullus lanatus HOM05D004367 ORTHO05D004937 1.0e-19 101.7 133 45.1
CsaV3_4G033760 Cucumis sativus L. HOM05D004367 ORTHO05D004937 1.0e-19 101.7 128 45.3
DCAR_017144 Daucus carota HOM05D004367 ORTHO05D004937 1.0e-19 101.7 168 41.7
ECA234G0664 Erigeron canadensis HOM05D004367 ORTHO05D004937 1.0e-19 101.7 128 46.1
Lj1A844G36 Lonicera japonica HOM05D004367 ORTHO05D004937 1.0e-19 101.7 164 43.3
FvH4_3g20190 Fragaria vesca HOM05D004367 ORTHO05D004937 1.3e-19 101.3 130 47.7
Ca_01836_v3 Cicer arietinum L. HOM05D004367 ORTHO05D004937 1.7e-19 100.9 128 46.1
Nitab4.5_0002383g0110 Nicotiana tabacum HOM05D004367 ORTHO05D004937 2.2e-19 100.5 166 39.8
Oeu005412.1 Olea europaea HOM05D004367 ORTHO05D004937 2.2e-19 100.5 167 41.9
QL08p021548 Quercus lobata HOM05D004367 ORTHO05D004937 2.2e-19 100.5 162 39.5
Sc16g0006960 Simmondsia chinensis HOM05D004367 ORTHO05D004937 2.2e-19 100.5 164 43.9
FAN21G3330 Fragaria x ananassa HOM05D004367 ORTHO05D004937 3.8e-19 99.8 130 45.4
CiPaw.11G168700 Carya illinoinensis HOM05D004367 ORTHO05D004937 5.0e-19 99.4 147 43.5
Ah.06g184060 Amaranthus hybridus HOM05D004367 ORTHO05D004937 6.5e-19 99.0 155 41.3
EL10Ac4g08166 Beta vulgaris HOM05D004367 ORTHO05D004937 6.5e-19 99.0 143 40.6
AUR62034287 Chenopodium quinoa HOM05D004367 ORTHO05D004937 1.1e-18 98.2 143 45.5
COL.COLO4_09395 Corchorus olitorius HOM05D004367 ORTHO05D004937 1.1e-18 98.2 151 42.4
SGA_v2.0_scaffold34G13821 Striga asiatica HOM05D004367 ORTHO05D004937 1.4e-18 97.8 161 41.0
Glyma.13G277700 Glycine max HOM05D004367 ORTHO05D004937 1.9e-18 97.4 142 40.8
RcHm_v2.0_Chr5g0034001 Rosa chinensis HOM05D004367 ORTHO05D004937 1.9e-18 97.4 154 42.2
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 1.9e-18 97.4 162 44.4
Migut.M00812 Erythranthe guttata HOM05D004367 ORTHO05D004937 7.2e-18 95.5 166 37.3
vmacro11860 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 7.2e-18 95.5 128 43.8
VMungo1080G0845 Vigna mungo HOM05D004367 ORTHO05D004937 9.4e-18 95.1 139 41.0
ATR0730G126 Amborella trichopoda HOM05D004367 ORTHO05D004937 1.2e-17 94.7 138 46.4
MELO3C016705.2 Cucumis melo HOM05D004367 ORTHO05D004937 1.6e-17 94.4 195 37.9
PGSC0003DMG400025036 Solanum tuberosum HOM05D004367 ORTHO05D004937 1.6e-17 94.4 166 39.8
Aqoxy4G00819 Aquilegia oxysepala HOM05D004367 ORTHO05D004937 2.1e-17 94.0 131 40.5
Nitab4.5_0000207g0150 Nicotiana tabacum HOM05D004367 ORTHO05D004937 3.6e-17 93.2 199 35.7
Cc05_g12110 Coffea canephora HOM05D004367 ORTHO05D004937 4.6e-17 92.8 133 42.1
SalBow8G3529 Salvia bowleyana HOM05D004367 ORTHO05D004937 6.1e-17 92.4 173 40.5
BcaB08g35738 Brassica carinata HOM05D004367 ORTHO05D004937 7.9e-17 92.0 188 37.2
Sopen10g002900 Solanum pennellii HOM05D004367 ORTHO05D004937 1.0e-16 91.7 166 39.2
MSTRG.15226 Avicennia marina HOM05D004367 ORTHO05D004937 1.4e-16 91.3 202 36.6
Nn1g06556 Nelumbo nucifera HOM05D004367 ORTHO05D004937 1.4e-16 91.3 150 40.0
Solyc10g006990.3 Solanum lycopersicum HOM05D004367 ORTHO05D004937 2.3e-16 90.5 183 37.7
TPR.G38993 Trifolium pratense HOM05D004367 ORTHO05D004937 2.3e-16 90.5 69 56.5
CSS0040030 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 3.9e-16 89.7 90 50.0
THA.LOC104799923 Tarenaya hassleriana HOM05D004367 ORTHO05D004937 8.8e-16 88.6 142 38.7
AT5G53770 Arabidopsis thaliana HOM05D004367 ORTHO05D004937 5.7e-15 85.9 185 33.5
Phvul.005G070800 Phaseolus vulgaris HOM05D004367 ORTHO05D004937 7.4e-15 85.5 143 39.2
Aa31LG3G10140 Aethionema arabicum HOM05D004367 ORTHO05D004937 1.3e-14 84.7 129 40.3
arahy.Tifrunner.gnm1.ann1.9F49MR Arachis hypogaea HOM05D002009 ORTHO05D004937 1.3e-14 84.7 138 40.6
Sp6g15840 Schrenkiella parvula HOM05D004367 ORTHO05D004937 2.2e-14 84.0 188 34.6
BcaB05g22072 Brassica carinata HOM05D004367 ORTHO05D004937 2.8e-14 83.6 187 35.8
AL8G28710 Arabidopsis lyrata HOM05D004367 ORTHO05D004937 4.8e-14 82.8 188 34.0
Carub.0008s1407 Capsella rubella HOM05D004367 ORTHO05D004937 4.8e-14 82.8 138 40.6
Ciclev10008854m.g Citrus clementina HOM05D004367 ORTHO05D004937 4.8e-14 82.8 67 52.2
Dinv20169 Davidia involucrata HOM05D000397 ORTHO05D004937 1.8e-13 80.9 100 47.0
A10p11150 Brassica napus HOM05D004367 ORTHO05D004937 2.4e-13 80.5 189 36.0
BraA10t43208Z Brassica rapa HOM05D004367 ORTHO05D004937 2.4e-13 80.5 189 36.0
BcaC04g20419 Brassica carinata HOM05D004367 ORTHO05D004937 6.9e-13 79.0 186 34.9
C09p43730 Brassica napus HOM05D004367 ORTHO05D004937 6.9e-13 79.0 186 34.9
BolC9t57258H Brassica oleracea HOM05D004367 ORTHO05D004937 6.9e-13 79.0 186 34.9
unitig_899.g15291 Utricularia gibba HOM05D004367 ORTHO05D004937 9.1e-13 78.6 166 35.5
Oeu060551.2 Olea europaea HOM05D004367 ORTHO05D004937 7.7e-12 75.5 46 69.6
Thhalv10013073m.g Eutrema salsugineum HOM05D004367 ORTHO05D004937 1.7e-11 74.3 139 36.7
SMO356G0731 Selaginella moellendorffii HOM05D004367 ORTHO05D004937 2.9e-11 73.6 50 60.0
SEGI_40468 Sequoiadendron giganteum HOM05D004367 ORTHO05D004937 7.2e-10 68.9 127 37.0
Pp3c24_20390 Physcomitrium patens HOM05D004367 ORTHO05D004937 9.4e-10 68.6 144 37.5
HPP92_007964 Vanilla planifolia HOM05D004367 ORTHO05D004937 9.4e-10 68.6 46 63.0
CBR_g262 Chara braunii HOM05D004367 ORTHO05D004937 1.4e-08 64.7 101 36.6
Mapoly0006s0037 Marchantia polymorpha HOM05D004367 ORTHO05D004937 2.0e-07 60.8 167 30.5
vmacro22868 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 2.6e-07 60.5 40 60.0
CDE10G0244 Ceratophyllum demersum HOM05D004367 ORTHO05D004937 3.3e-07 60.1 40 65.0
Gohir.A05G179700 Gossypium hirsutum HOM05D004367 ORTHO05D004937 3.3e-07 60.1 40 60.0
Gohir.A08G145700 Gossypium hirsutum HOM05D004367 ORTHO05D004937 3.3e-07 60.1 38 65.8
AagrBONN_evm.TU.Sc2ySwM_362.745 Anthoceros agrestis HOM05D004367 ORTHO05D004937 1.7e-06 57.8 167 31.7
Cre17.g720750 Chlamydomonas reinhardtii HOM05D004367 ORTHO05D004937 4.8e-06 56.2 62 35.5


User provided reference genes

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