Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0668200 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D006683 5.1e-283 977.2 556 100.0
Zm00001eb157300 Zea mays HOM05D000070 ORTHO05D006683 2.9e-84 317.0 301 57.1
Lj3g0013945 Lotus japonicus HOM05D000070 ORTHO05D006683 4.6e-42 176.8 487 33.3
Lalb_Chr20g0109491 Lupinus albus HOM05D000070 ORTHO05D006683 5.9e-37 159.8 512 35.4
Sc07g0002540 Simmondsia chinensis HOM05D000070 ORTHO05D006683 5.9e-37 159.8 498 34.9
MD11G1256000 Malus domestica HOM05D000070 ORTHO05D006683 1.0e-36 159.1 91 72.5
Hma1.2p1_0416F.1_g148470 Hydrangea macrophylla HOM05D000070 ORTHO05D006683 1.3e-36 158.7 92 73.9
TAR626G0798 Trochodendron aralioides HOM05D000070 ORTHO05D006683 8.5e-36 156.0 177 46.9
MSTRG.14209 Avicennia marina HOM05D000070 ORTHO05D006683 1.1e-35 155.6 482 30.9
CiPaw.11G166700 Carya illinoinensis HOM05D000070 ORTHO05D006683 1.1e-35 155.6 515 31.7
Lsat_1_v5_gn_9_98220 Lactuca sativa HOM05D000070 ORTHO05D006683 1.1e-35 155.6 87 72.4
PGR083G0044 Punica granatum HOM05D000070 ORTHO05D006683 1.1e-35 155.6 495 30.5
Hma1.2p1_0416F.1_g148460 Hydrangea macrophylla HOM05D000070 ORTHO05D006683 1.9e-35 154.8 208 43.8
QL08p023642 Quercus lobata HOM05D000070 ORTHO05D006683 4.2e-35 153.7 501 34.1
Thecc.07G098900 Theobroma cacao HOM05D000070 ORTHO05D006683 7.2e-35 152.9 494 37.9
Lj1A837T49 Lonicera japonica HOM05D000070 ORTHO05D006683 9.4e-35 152.5 493 30.4
vmacro09519 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 9.4e-35 152.5 498 30.9
CANSAT35G1857 Cannabis sativa HOM05D000070 ORTHO05D006683 1.2e-34 152.1 91 70.3
Duzib170G1082 Durio zibethinus HOM05D000070 ORTHO05D006683 2.1e-34 151.4 509 31.2
Potri.011G141400 Populus trichocarpa HOM05D000070 ORTHO05D006683 2.1e-34 151.4 542 32.1
Dinv14946 Davidia involucrata HOM05D000070 ORTHO05D006683 2.7e-34 151.0 496 32.7
TPR.G7945 Trifolium pratense HOM05D000070 ORTHO05D006683 2.7e-34 151.0 96 66.7
Ca_03533_v3 Cicer arietinum L. HOM05D000070 ORTHO05D006683 3.6e-34 150.6 496 30.8
TAR624G0378 Trochodendron aralioides HOM05D000070 ORTHO05D006683 3.6e-34 150.6 500 32.0
CSS0012964 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D006683 4.7e-34 150.2 529 30.8
RcHm_v2.0_Chr5g0032311 Rosa chinensis HOM05D000070 ORTHO05D006683 7.9e-34 149.4 498 30.7
CDE10G0809 Ceratophyllum demersum HOM05D000070 ORTHO05D006683 1.4e-33 148.7 155 51.0
Psat5g241520 Pisum sativum HOM05D000070 ORTHO05D006683 2.3e-33 147.9 493 34.5
Sabra11G0127000 Salix brachista HOM05D000070 ORTHO05D006683 3.9e-33 147.1 542 31.5
Actinidia35238 Actinidia chinensis HOM05D000070 ORTHO05D006683 5.1e-33 146.7 517 31.9
Duzib213G1081 Durio zibethinus HOM05D000070 ORTHO05D006683 1.1e-32 145.6 499 37.7
HanXRQChr13g0391161 Helianthus annuus HOM05D000070 ORTHO05D006683 1.5e-32 145.2 495 31.1
Lalb_Chr25g0286211 Lupinus albus HOM05D000070 ORTHO05D006683 1.5e-32 145.2 522 34.1
Cfa020618 Carpinus fangiana HOM05D000070 ORTHO05D006683 2.0e-32 144.8 246 41.9
Gohir.D01G047300 Gossypium hirsutum HOM05D000070 ORTHO05D006683 2.6e-32 144.4 517 30.6
Gorai.002G066800 Gossypium raimondii HOM05D000070 ORTHO05D006683 2.6e-32 144.4 518 30.5
Medtr2g078630 Medicago truncatula HOM05D000070 ORTHO05D006683 2.6e-32 144.4 483 36.0
Nitab4.5_0000246g0030 Nicotiana tabacum HOM05D000070 ORTHO05D006683 3.3e-32 144.1 186 43.5
Phvul.005G069600 Phaseolus vulgaris HOM05D000070 ORTHO05D006683 4.4e-32 143.7 505 30.5
Nitab4.5_0002019g0010 Nicotiana tabacum HOM05D000070 ORTHO05D006683 5.7e-32 143.3 200 41.5
ClCG05G009240 Citrullus lanatus HOM05D000070 ORTHO05D006683 7.4e-32 142.9 516 30.2
ECA240G2408 Erigeron canadensis HOM05D000070 ORTHO05D006683 7.4e-32 142.9 212 41.0
Manes.15G090100 Manihot esculenta HOM05D000070 ORTHO05D006683 9.7e-32 142.5 501 31.7
SGA_v2.0_scaffold70G23693 Striga asiatica HOM05D000070 ORTHO05D006683 1.7e-31 141.7 501 28.9
AT3G15120 Arabidopsis thaliana HOM05D000070 ORTHO05D006683 2.2e-31 141.4 139 49.6
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 2.2e-31 141.4 205 39.0
CARHR090100 Cardamine hirsuta HOM05D000070 ORTHO05D006683 2.8e-31 141.0 96 62.5
Sp3g13330 Schrenkiella parvula HOM05D000070 ORTHO05D006683 3.7e-31 140.6 203 41.9
FAN25G1528 Fragaria x ananassa HOM05D000070 ORTHO05D006683 4.8e-31 140.2 514 30.7
GSVIVG01014274001 Vitis vinifera HOM05D000070 ORTHO05D006683 4.8e-31 140.2 536 31.9
AL3G27480 Arabidopsis lyrata HOM05D000070 ORTHO05D006683 8.2e-31 139.4 171 45.0
FAN21G0502 Fragaria x ananassa HOM05D000070 ORTHO05D006683 8.2e-31 139.4 514 29.8
TWI38G2035 Tripterygium wilfordii HOM05D000070 ORTHO05D006683 8.2e-31 139.4 546 28.2
FAN16G3451 Fragaria x ananassa HOM05D000070 ORTHO05D006683 1.4e-30 138.7 516 31.2
PGSC0003DMG400012401 Solanum tuberosum HOM05D000070 ORTHO05D006683 1.4e-30 138.7 499 28.1
Carub.0003s1477 Capsella rubella HOM05D000070 ORTHO05D006683 1.8e-30 138.3 211 41.2
MELO3C019399.2 Cucumis melo HOM05D000070 ORTHO05D006683 1.8e-30 138.3 250 39.2
DCAR_013128 Daucus carota HOM05D000070 ORTHO05D006683 1.8e-30 138.3 528 29.4
VMungo1080G0328 Vigna mungo HOM05D000070 ORTHO05D006683 1.8e-30 138.3 503 31.4
Ah.06g184760 Amaranthus hybridus HOM05D000070 ORTHO05D006683 2.4e-30 137.9 523 29.4
Dinv20210 Davidia involucrata HOM05D000070 ORTHO05D006683 2.4e-30 137.9 515 30.1
arahy.Tifrunner.gnm1.ann1.48N9B9 Arachis hypogaea HOM05D000070 ORTHO05D006683 3.1e-30 137.5 508 29.1
THA.LOC104810458 Tarenaya hassleriana HOM05D000070 ORTHO05D006683 5.3e-30 136.7 120 55.0
Aa31LG8G2340 Aethionema arabicum HOM05D000070 ORTHO05D006683 7.0e-30 136.3 206 39.8
Gohir.A08G021408 Gossypium hirsutum HOM05D000070 ORTHO05D006683 7.0e-30 136.3 513 34.9
Prupe.4G173800 Prunus persica HOM05D000070 ORTHO05D006683 9.1e-30 136.0 485 30.5
FvH4_3g19240 Fragaria vesca HOM05D000070 ORTHO05D006683 1.2e-29 135.6 505 30.9
Nn1g06393 Nelumbo nucifera HOM05D000070 ORTHO05D006683 1.2e-29 135.6 512 31.6
Cc05_g11650 Coffea canephora HOM05D000070 ORTHO05D006683 1.5e-29 135.2 524 29.4
Aqoxy1G02305 Aquilegia oxysepala HOM05D000070 ORTHO05D006683 2.0e-29 134.8 496 30.0
EL10Ac4g08256 Beta vulgaris HOM05D000070 ORTHO05D006683 2.0e-29 134.8 484 30.6
CAN.G162.29 Capsicum annuum HOM05D000070 ORTHO05D006683 2.0e-29 134.8 491 30.1
Gohir.A01G060800 Gossypium hirsutum HOM05D000070 ORTHO05D006683 2.0e-29 134.8 516 29.1
AUR62036148 Chenopodium quinoa HOM05D000070 ORTHO05D006683 2.6e-29 134.4 488 28.7
Thhalv10019880m.g Eutrema salsugineum HOM05D000070 ORTHO05D006683 2.6e-29 134.4 206 39.3
FAN11G2237 Fragaria x ananassa HOM05D000070 ORTHO05D006683 2.6e-29 134.4 505 30.9
CsaV3_3G019540 Cucumis sativus L. HOM05D000070 ORTHO05D006683 4.5e-29 133.7 529 28.9
AUR62019488 Chenopodium quinoa HOM05D000070 ORTHO05D006683 1.0e-28 132.5 492 29.3
Gorai.004G029700 Gossypium raimondii HOM05D000070 ORTHO05D006683 1.3e-28 132.1 522 36.0
Gohir.D08G032300 Gossypium hirsutum HOM05D000070 ORTHO05D006683 2.2e-28 131.3 522 34.3
Peaxi162Scf00069g01842 Petunia axillaris HOM05D000070 ORTHO05D006683 2.2e-28 131.3 490 28.6
C03p47510 Brassica napus HOM05D000070 ORTHO05D006683 5.0e-28 130.2 201 38.3
BolC3t17015H Brassica oleracea HOM05D000070 ORTHO05D006683 5.0e-28 130.2 201 38.3
Solyc07g062770.2 Solanum lycopersicum HOM05D000070 ORTHO05D006683 6.5e-28 129.8 490 28.0
unitig_899.g15571 Utricularia gibba HOM05D000070 ORTHO05D006683 6.5e-28 129.8 163 44.8
PSO541G4369 Papaver somniferum HOM05D000070 ORTHO05D006683 1.4e-27 128.6 487 31.0
BcaC01g03897 Brassica carinata HOM05D000070 ORTHO05D006683 1.9e-27 128.3 201 39.8
A03p39160 Brassica napus HOM05D000070 ORTHO05D006683 1.9e-27 128.3 204 38.7
BraA03t13065Z Brassica rapa HOM05D000070 ORTHO05D006683 1.9e-27 128.3 204 38.7
Glyma.13G273300 Glycine max HOM05D000070 ORTHO05D006683 1.9e-27 128.3 505 28.7
Sopen07g030990 Solanum pennellii HOM05D000070 ORTHO05D006683 2.5e-27 127.9 489 27.8
Atru.chr2.2387 Acer truncatum HOM05D000070 ORTHO05D006683 4.2e-27 127.1 77 66.2
Ciclev10007229m.g Citrus clementina HOM05D000070 ORTHO05D006683 2.1e-26 124.8 562 29.0
Glyma.12G227000 Glycine max HOM05D000070 ORTHO05D006683 2.7e-26 124.4 508 29.5
SEGI_00098 Sequoiadendron giganteum HOM05D000070 ORTHO05D006683 3.0e-25 120.9 88 62.5
SalBow7G0119 Salvia bowleyana HOM05D000070 ORTHO05D006683 4.4e-24 117.1 521 30.5
Migut.H01962 Erythranthe guttata HOM05D000070 ORTHO05D006683 2.2e-23 114.8 77 63.6
SHI21480 Sapria himalayana HOM05D000070 ORTHO05D006683 5.0e-20 103.6 486 29.0
Sed0002493 Sechium edule HOM05D000070 ORTHO05D006683 4.4e-16 90.5 101 43.6
Sed0005814 Sechium edule HOM05D000070 ORTHO05D006683 1.8e-14 85.1 100 42.0
Pp3c8_5410 Physcomitrium patens HOM05D000070 ORTHO05D006683 7.0e-14 83.2 191 31.9
ClCG04G000030 Citrullus lanatus HOM05D000070 ORTHO05D006683 7.7e-13 79.7 85 42.4
AagrBONN_evm.TU.Sc2ySwM_368.1632 Anthoceros agrestis HOM05D000070 ORTHO05D006683 1.0e-12 79.3 82 46.3
Mapoly0043s0039 Marchantia polymorpha HOM05D036583 ORTHO05D006683 1.1e-06 59.3 222 28.8
HPP92_024566 Vanilla planifolia HOM05D000070 ORTHO05D006683 5.4e-06 57.0 30 76.7


User provided reference genes

Program Settings