Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0654200 Oryza sativa ssp. japonica HOM05D006967 ORTHO05D008692 1.2e-197 693.0 339 100.0
Zm00001eb158090 Zea mays HOM05D006967 ORTHO05D008692 1.1e-102 377.5 292 62.0
MD10G1221200 Malus domestica HOM05D006967 ORTHO05D008692 2.7e-69 266.5 335 42.7
RcHm_v2.0_Chr5g0022471 Rosa chinensis HOM05D006967 ORTHO05D008692 2.7e-69 266.5 335 43.0
FAN11G3906 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.0e-68 264.6 341 42.5
FvH4_3g13520 Fragaria vesca HOM05D006967 ORTHO05D008692 8.7e-68 261.5 333 43.2
Prupe.4G123400 Prunus persica HOM05D006967 ORTHO05D008692 1.5e-67 260.8 336 43.2
MBI10_g30431_MAGBIO Magnolia biondii HOM05D006967 ORTHO05D008692 2.5e-67 260.0 345 39.7
FAN25G2282 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.3e-66 257.7 332 42.5
PSO675G8399 Papaver somniferum HOM05D006967 ORTHO05D008692 6.3e-66 255.4 342 40.6
FAN21G4071 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.4e-65 254.2 344 41.6
CSS0034338 Camellia sinensis var. sinensis HOM05D006967 ORTHO05D008692 1.8e-65 253.8 341 41.1
Nn7g38428 Nelumbo nucifera HOM05D006967 ORTHO05D008692 3.1e-65 253.1 340 40.0
PSO541G0117 Papaver somniferum HOM05D006967 ORTHO05D008692 3.1e-65 253.1 342 40.9
HPP92_009939 Vanilla planifolia HOM05D006967 ORTHO05D008692 3.1e-65 253.1 346 40.8
Aqoxy1G01340 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 1.5e-64 250.8 344 39.5
Potri.003G157800 Populus trichocarpa HOM05D006967 ORTHO05D008692 1.7e-63 247.3 339 40.7
Haze_05177 Corylus avellana HOM05D006967 ORTHO05D008692 3.8e-63 246.1 342 39.5
Thecc.05G313500 Theobroma cacao HOM05D006967 ORTHO05D008692 3.2e-62 243.0 341 40.5
CiPaw.09G141400 Carya illinoinensis HOM05D006967 ORTHO05D008692 7.2e-62 241.9 343 39.9
Manes.18G124500 Manihot esculenta HOM05D006967 ORTHO05D008692 1.2e-61 241.1 340 40.0
Peaxi162Scf00715g00310 Petunia axillaris HOM05D006967 ORTHO05D008692 4.6e-61 239.2 341 41.1
Medtr8g070630 Medicago truncatula HOM05D006967 ORTHO05D008692 3.0e-60 236.5 344 39.2
TPR.G19829 Trifolium pratense HOM05D006967 ORTHO05D008692 2.5e-59 233.4 344 39.8
TAR624G1073 Trochodendron aralioides HOM05D006967 ORTHO05D008692 2.5e-59 233.4 277 43.0
CAN.G40.7 Capsicum annuum HOM05D006967 ORTHO05D008692 5.7e-59 232.3 341 39.6
CANSAT35G1213 Cannabis sativa HOM05D006967 ORTHO05D008692 9.7e-59 231.5 332 39.2
FAN16G1037 Fragaria x ananassa HOM05D006967 ORTHO05D008692 2.8e-58 229.9 290 44.1
Rhsim13G0136900 Rhododendron simsii HOM05D006967 ORTHO05D008692 8.2e-58 228.4 292 41.8
Duzib177G0925 Durio zibethinus HOM05D006967 ORTHO05D008692 1.1e-57 228.0 319 41.1
Aa31LG6G2720 Aethionema arabicum HOM05D006967 ORTHO05D008692 1.4e-57 227.6 342 38.0
Lj4g0002657 Lotus japonicus HOM05D006967 ORTHO05D008692 2.4e-57 226.9 341 39.0
Oeu008739.3 Olea europaea HOM05D006967 ORTHO05D008692 2.4e-57 226.9 347 38.3
C01p14260 Brassica napus HOM05D006967 ORTHO05D008692 5.3e-57 225.7 331 37.5
Sp7g18650 Schrenkiella parvula HOM05D006967 ORTHO05D008692 6.9e-57 225.3 331 40.2
AL7G33600 Arabidopsis lyrata HOM05D006967 ORTHO05D008692 2.0e-56 223.8 332 38.6
AT4G20310 Arabidopsis thaliana HOM05D006967 ORTHO05D008692 2.6e-56 223.4 331 38.4
BolC1t01391H Brassica oleracea HOM05D006967 ORTHO05D008692 2.6e-56 223.4 331 37.2
Gorai.013G126100 Gossypium raimondii HOM05D006967 ORTHO05D008692 3.4e-56 223.0 341 38.1
BcaNung03720 Brassica carinata HOM05D006967 ORTHO05D008692 5.9e-56 222.2 332 37.0
Gohir.D13G112300 Gossypium hirsutum HOM05D006967 ORTHO05D008692 5.9e-56 222.2 343 38.2
Lalb_Chr09g0334571 Lupinus albus HOM05D006967 ORTHO05D008692 5.9e-56 222.2 339 37.8
Carub.0007s2087 Capsella rubella HOM05D006967 ORTHO05D008692 1.0e-55 221.5 325 38.2
Eucgr.E04333 Eucalyptus grandis HOM05D006967 ORTHO05D008692 1.0e-55 221.5 336 38.1
BcaC09g51322 Brassica carinata HOM05D006967 ORTHO05D008692 1.7e-55 220.7 331 37.2
A01p12010 Brassica napus HOM05D006967 ORTHO05D008692 1.7e-55 220.7 334 37.7
Thhalv10024898m.g Eutrema salsugineum HOM05D006967 ORTHO05D008692 8.5e-55 218.4 328 38.1
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 1.4e-54 217.6 322 37.6
Glyma.16G096000 Glycine max HOM05D006967 ORTHO05D008692 1.4e-54 217.6 339 36.9
Gohir.A13G109700 Gossypium hirsutum HOM05D006967 ORTHO05D008692 1.4e-54 217.6 343 38.2
THA.LOC104806234 Tarenaya hassleriana HOM05D006967 ORTHO05D008692 1.9e-54 217.2 344 38.1
ATR0737G179 Amborella trichopoda HOM05D006967 ORTHO05D008692 4.2e-54 216.1 342 37.4
BraA01t01143Z Brassica rapa HOM05D006967 ORTHO05D008692 9.4e-54 214.9 333 36.3
SHI28117 Sapria himalayana HOM05D006967 ORTHO05D008692 1.6e-53 214.2 344 37.8
TWI63G0275 Tripterygium wilfordii HOM05D006967 ORTHO05D008692 1.6e-53 214.2 351 36.5
Cc09_g04480 Coffea canephora HOM05D006967 ORTHO05D008692 2.7e-53 213.4 337 38.3
Phvul.003G274600 Phaseolus vulgaris HOM05D006967 ORTHO05D008692 6.1e-53 212.2 344 35.8
BcaNung03721 Brassica carinata HOM05D006967 ORTHO05D008692 1.0e-52 211.5 334 36.8
vmacro03578 Vaccinium macrocarpon HOM05D006967 ORTHO05D008692 1.4e-52 211.1 412 33.5
Sopen01g015960 Solanum pennellii HOM05D006967 ORTHO05D008692 5.1e-52 209.1 341 36.4
MSTRG.24877 Avicennia marina HOM05D006967 ORTHO05D008692 2.0e-51 207.2 340 34.4
Sopen01g019010 Solanum pennellii HOM05D006967 ORTHO05D008692 2.0e-51 207.2 341 36.1
HanXRQChr14g0439851 Helianthus annuus HOM05D006967 ORTHO05D008692 4.4e-51 206.1 344 37.8
EL10Ac5g10560 Beta vulgaris HOM05D006967 ORTHO05D008692 5.7e-51 205.7 334 35.6
AUR62032339 Chenopodium quinoa HOM05D006967 ORTHO05D008692 5.7e-51 205.7 341 35.5
QL11p010599 Quercus lobata HOM05D006967 ORTHO05D008692 7.4e-51 205.3 292 38.4
Lj2A340G21 Lonicera japonica HOM05D006967 ORTHO05D008692 2.8e-50 203.4 294 38.4
Sabra03G0114400 Salix brachista HOM05D006967 ORTHO05D008692 4.8e-50 202.6 268 41.0
Sed0023777 Sechium edule HOM05D006967 ORTHO05D008692 4.8e-50 202.6 339 35.1
arahy.Tifrunner.gnm1.ann1.B3JMJ8 Arachis hypogaea HOM05D006967 ORTHO05D008692 4.1e-49 199.5 354 34.5
Solyc01g049910.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 5.3e-49 199.1 341 35.5
Solyc01g020520.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 7.0e-49 198.7 353 35.1
SGA_v2.0_scaffold62G21391 Striga asiatica HOM05D006967 ORTHO05D008692 1.2e-48 198.0 333 39.0
Hund09497 Selenicereus undatus HOM05D006967 ORTHO05D008692 3.5e-48 196.4 313 38.0
MELO3C005917.2 Cucumis melo HOM05D006967 ORTHO05D008692 4.5e-48 196.1 341 34.3
PGSC0003DMG402016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 4.5e-48 196.1 306 37.9
CsaV3_5G000140 Cucumis sativus L. HOM05D006967 ORTHO05D008692 6.5e-47 192.2 338 34.3
arahy.Tifrunner.gnm1.ann1.IV6A0X Arachis hypogaea HOM05D006967 ORTHO05D008692 7.2e-46 188.7 326 35.0
arahy.Tifrunner.gnm1.ann1.S5Z5QJ Arachis hypogaea HOM05D006967 ORTHO05D008692 7.2e-46 188.7 326 35.0
Migut.K01517 Erythranthe guttata HOM05D006967 ORTHO05D008692 7.2e-46 188.7 341 34.6
CARHR227130 Cardamine hirsuta HOM05D006967 ORTHO05D008692 9.4e-46 188.3 332 34.3
Migut.G00899 Erythranthe guttata HOM05D006967 ORTHO05D008692 1.2e-45 188.0 341 34.6
Nitab4.5_0000217g0010 Nicotiana tabacum HOM05D006967 ORTHO05D008692 1.6e-45 187.6 291 36.8
VMungo0251G0412 Vigna mungo HOM05D006967 ORTHO05D008692 2.7e-45 186.8 312 35.6
Migut.M02039 Erythranthe guttata HOM05D006967 ORTHO05D008692 3.6e-45 186.4 341 34.3
ClCG01G000040 Citrullus lanatus HOM05D006967 ORTHO05D008692 3.7e-42 176.4 289 36.7
AUR62028614 Chenopodium quinoa HOM05D006967 ORTHO05D008692 8.2e-42 175.3 353 33.4
SEGI_11534 Sequoiadendron giganteum HOM05D006967 ORTHO05D008692 4.1e-41 172.9 366 32.0
ECA238G0649 Erigeron canadensis HOM05D006967 ORTHO05D008692 5.3e-41 172.6 346 33.2
Cpa.g.sc30.57 Carica papaya HOM05D006967 ORTHO05D008692 7.7e-40 168.7 269 36.8
Psat4g112640 Pisum sativum HOM05D006967 ORTHO05D008692 1.0e-36 158.3 224 41.5
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 2.0e-35 154.1 251 35.9
Nitab4.5_0001253g0030 Nicotiana tabacum HOM05D006967 ORTHO05D008692 2.6e-35 153.7 258 34.9
Dinv05283 Davidia involucrata HOM05D006967 ORTHO05D008692 7.7e-32 142.1 220 34.1
Ca_22538_v3 Cicer arietinum L. HOM05D006967 ORTHO05D008692 1.0e-28 131.7 278 32.7
Ciclev10015668m.g Citrus clementina HOM05D006967 ORTHO05D008692 2.0e-24 117.5 181 37.0
SMO176G0004 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 6.6e-23 112.5 312 27.9
AagrBONN_evm.TU.Sc2ySwM_368.2736 Anthoceros agrestis HOM05D006967 ORTHO05D008692 6.3e-18 95.9 346 24.0
Ah.11g050600 Amaranthus hybridus HOM05D006967 ORTHO05D008692 1.8e-17 94.4 171 31.0
HPP92_007230 Vanilla planifolia HOM05D006967 ORTHO05D008692 1.6e-16 91.3 172 35.5
Potri.001G073200 Populus trichocarpa HOM05D006967 ORTHO05D008692 7.8e-16 89.0 139 36.0
Sc05g0001460 Simmondsia chinensis HOM05D006967 ORTHO05D008692 7.3e-14 82.4 183 31.1
Aqoxy4G01848 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 4.0e-12 76.6 105 37.1
CAN.G40.9 Capsicum annuum HOM05D006967 ORTHO05D008692 4.1e-09 66.6 179 30.7
HPP92_007178 Vanilla planifolia HOM05D006967 ORTHO05D008692 6.6e-07 59.3 91 34.1


User provided reference genes

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