Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0626900 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 2.2e-137 492.3 246 100.0
Thecc.06G154000 Theobroma cacao HOM05D004468 ORTHO05D008180 2.3e-33 146.7 220 45.9
QL05p059278 Quercus lobata HOM05D004468 ORTHO05D008180 2.5e-32 143.3 212 43.9
CiPaw.10G093500 Carya illinoinensis HOM05D004468 ORTHO05D008180 2.1e-31 140.2 222 41.9
Dinv33636 Davidia involucrata HOM05D004468 ORTHO05D008180 2.1e-31 140.2 221 42.1
Gohir.A10G039100 Gossypium hirsutum HOM05D004468 ORTHO05D008180 4.7e-31 139.0 221 43.9
CiPaw.09G126600 Carya illinoinensis HOM05D004468 ORTHO05D008180 6.2e-31 138.7 224 44.2
Gorai.011G042000 Gossypium raimondii HOM05D004468 ORTHO05D008180 6.2e-31 138.7 218 44.0
Duzib235G1094 Durio zibethinus HOM05D004468 ORTHO05D008180 1.1e-30 137.9 223 45.7
Aqoxy1G01779 Aquilegia oxysepala HOM05D004468 ORTHO05D008180 1.4e-30 137.5 258 40.3
Dinv05249 Davidia involucrata HOM05D004468 ORTHO05D008180 3.1e-30 136.3 221 41.6
Cc09_g09510 Coffea canephora HOM05D004468 ORTHO05D008180 4.0e-30 136.0 249 41.0
COL.COLO4_06070 Corchorus olitorius HOM05D004468 ORTHO05D008180 4.0e-30 136.0 216 44.4
vmacro10945 Vaccinium macrocarpon HOM05D004468 ORTHO05D008180 4.0e-30 136.0 252 41.3
Gohir.D05G152600 Gossypium hirsutum HOM05D004468 ORTHO05D008180 6.9e-30 135.2 219 43.8
Dinv30712 Davidia involucrata HOM05D004468 ORTHO05D008180 1.2e-29 134.4 221 41.6
Duzib160G0871 Durio zibethinus HOM05D004468 ORTHO05D008180 2.0e-29 133.7 217 46.5
Gorai.009G156700 Gossypium raimondii HOM05D004468 ORTHO05D008180 2.0e-29 133.7 220 43.6
Gohir.A05G150000 Gossypium hirsutum HOM05D004468 ORTHO05D008180 4.4e-29 132.5 220 43.6
Os03g0591300 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 5.8e-29 132.1 212 40.1
Zm00001eb384990 Zea mays HOM05D004468 ORTHO05D008180 5.8e-29 132.1 200 44.0
Ciclev10016464m.g Citrus clementina HOM05D004468 ORTHO05D008180 7.6e-29 131.7 218 43.1
TAR629G0415 Trochodendron aralioides HOM05D004468 ORTHO05D008180 7.6e-29 131.7 220 42.3
Os02g0315600 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 1.7e-28 130.6 195 45.6
Duzib192G0660 Durio zibethinus HOM05D004468 ORTHO05D008180 3.8e-28 129.4 216 44.9
MD05G1288800 Malus domestica HOM05D004468 ORTHO05D008180 4.9e-28 129.0 239 40.2
Potri.011G080000 Populus trichocarpa HOM05D004468 ORTHO05D008180 6.4e-28 128.6 214 41.1
Manes.15G119000 Manihot esculenta HOM05D004468 ORTHO05D008180 1.9e-27 127.1 196 43.9
Prupe.4G077100 Prunus persica HOM05D004468 ORTHO05D008180 1.9e-27 127.1 221 41.6
Haze_05549 Corylus avellana HOM05D004468 ORTHO05D008180 2.4e-27 126.7 222 40.5
Manes.17G067600 Manihot esculenta HOM05D004468 ORTHO05D008180 2.4e-27 126.7 217 38.7
MD10G1264900 Malus domestica HOM05D004468 ORTHO05D008180 2.7e-26 123.2 222 41.0
RhsimUnG0149400 Rhododendron simsii HOM05D004468 ORTHO05D008180 4.6e-26 122.5 259 38.2
Nn4g26508 Nelumbo nucifera HOM05D004468 ORTHO05D008180 6.0e-26 122.1 204 43.6
Cfa000973 Carpinus fangiana HOM05D004468 ORTHO05D008180 7.8e-26 121.7 221 39.4
Sed0007839 Sechium edule HOM05D004468 ORTHO05D008180 7.8e-26 121.7 231 38.5
TWI53G1884 Tripterygium wilfordii HOM05D004468 ORTHO05D008180 7.8e-26 121.7 218 41.7
Migut.H01376 Erythranthe guttata HOM05D004468 ORTHO05D008180 1.0e-25 121.3 228 36.8
Atru.chr10.1342 Acer truncatum HOM05D004468 ORTHO05D008180 1.3e-25 120.9 225 39.6
CsaV3_6G051560 Cucumis sativus L. HOM05D004468 ORTHO05D008180 1.7e-25 120.6 236 40.3
Sc17g0005060 Simmondsia chinensis HOM05D004468 ORTHO05D008180 1.7e-25 120.6 189 43.9
THA.LOC104820641 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 1.7e-25 120.6 191 41.9
SalBow6G4733 Salvia bowleyana HOM05D004468 ORTHO05D008180 3.0e-25 119.8 204 38.2
Nitab4.5_0001040g0150 Nicotiana tabacum HOM05D004468 ORTHO05D008180 3.9e-25 119.4 221 39.4
Glyma.05G129400 Glycine max HOM05D004468 ORTHO05D008180 5.1e-25 119.0 217 41.5
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 8.7e-25 118.2 218 37.2
SalBow7G0317 Salvia bowleyana HOM05D004468 ORTHO05D008180 1.1e-24 117.9 204 37.7
Lj4g0016525 Lotus japonicus HOM05D004468 ORTHO05D008180 1.9e-24 117.1 215 42.3
Psat7g090880 Pisum sativum HOM05D004468 ORTHO05D008180 1.9e-24 117.1 211 40.3
Medtr4g096660 Medicago truncatula HOM05D004468 ORTHO05D008180 3.3e-24 116.3 190 42.1
Solyc02g070880.1 Solanum lycopersicum HOM05D004468 ORTHO05D008180 4.3e-24 115.9 215 39.1
MSTRG.13248 Avicennia marina HOM05D004468 ORTHO05D008180 5.6e-24 115.5 256 34.8
arahy.Tifrunner.gnm1.ann1.2E3FWC Arachis hypogaea HOM05D004468 ORTHO05D008180 7.3e-24 115.2 235 36.2
Sopen02g019960 Solanum pennellii HOM05D004468 ORTHO05D008180 7.3e-24 115.2 220 38.2
PGSC0003DMG400008295 Solanum tuberosum HOM05D004468 ORTHO05D008180 9.6e-24 114.8 225 40.0
TPR.G4895 Trifolium pratense HOM05D004468 ORTHO05D008180 9.6e-24 114.8 230 38.7
Sp1g25810 Schrenkiella parvula HOM05D004468 ORTHO05D008180 1.3e-23 114.4 230 36.5
AL1G43790 Arabidopsis lyrata HOM05D004468 ORTHO05D008180 2.1e-23 113.6 209 37.8
CAN.G257.6 Capsicum annuum HOM05D004468 ORTHO05D008180 2.1e-23 113.6 223 38.6
Ca_18271_v3 Cicer arietinum L. HOM05D004468 ORTHO05D008180 2.1e-23 113.6 206 39.3
Lalb_Chr13g0291991 Lupinus albus HOM05D004468 ORTHO05D008180 2.1e-23 113.6 194 43.8
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 2.1e-23 113.6 224 39.7
BcaB03g13850 Brassica carinata HOM05D004468 ORTHO05D008180 3.6e-23 112.8 225 36.9
Thhalv10009888m.g Eutrema salsugineum HOM05D004468 ORTHO05D008180 8.1e-23 111.7 208 38.9
PSO675G1482 Papaver somniferum HOM05D004468 ORTHO05D008180 3.1e-22 109.8 210 37.6
VMungo0251G1661 Vigna mungo HOM05D004468 ORTHO05D008180 4.0e-22 109.4 224 35.7
MSTRG.14764 Avicennia marina HOM05D004468 ORTHO05D008180 5.3e-22 109.0 225 36.9
Phvul.002G194400 Phaseolus vulgaris HOM05D004468 ORTHO05D008180 5.3e-22 109.0 232 35.3
PSO541G2725 Papaver somniferum HOM05D004468 ORTHO05D008180 6.9e-22 108.6 218 38.1
Sed0014650 Sechium edule HOM05D004468 ORTHO05D008180 6.9e-22 108.6 212 38.2
THA.LOC104812665 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 6.9e-22 108.6 179 40.2
Oeu052384.1 Olea europaea HOM05D004468 ORTHO05D008180 9.0e-22 108.2 188 39.9
unitig_8.g4884 Utricularia gibba HOM05D004468 ORTHO05D008180 9.0e-22 108.2 234 35.5
Sabra11G0068700 Salix brachista HOM05D004468 ORTHO05D008180 1.2e-21 107.8 186 39.8
Sabra11G0070800 Salix brachista HOM05D004468 ORTHO05D008180 1.2e-21 107.8 186 39.8
MD05G1288000 Malus domestica HOM05D004468 ORTHO05D008180 2.6e-21 106.7 209 35.9
MD05G1288300 Malus domestica HOM05D004468 ORTHO05D008180 1.3e-20 104.4 209 35.9
Glyma.08G084100 Glycine max HOM05D004468 ORTHO05D008180 1.7e-20 104.0 200 38.0
CARHR029490 Cardamine hirsuta HOM05D004468 ORTHO05D008180 3.8e-20 102.8 210 35.7
Hma1.2p1_0164F.1_g073090 Hydrangea macrophylla HOM05D004468 ORTHO05D008180 6.4e-20 102.1 237 38.4
A08p24790 Brassica napus HOM05D004468 ORTHO05D008180 4.2e-19 99.4 233 34.8
BraA08t34433Z Brassica rapa HOM05D004468 ORTHO05D008180 4.2e-19 99.4 233 34.8
C03p76270 Brassica napus HOM05D004468 ORTHO05D008180 5.4e-19 99.0 208 36.5
BolC3t19884H Brassica oleracea HOM05D004468 ORTHO05D008180 5.4e-19 99.0 208 36.5
RcHm_v2.0_Chr5g0013411 Rosa chinensis HOM05D004468 ORTHO05D008180 5.4e-19 99.0 207 38.6
AT1G29950 Arabidopsis thaliana HOM05D004468 ORTHO05D008180 9.3e-19 98.2 203 35.5
FvH4_3g06000 Fragaria vesca HOM05D004468 ORTHO05D008180 9.3e-19 98.2 228 36.8
C07p15630 Brassica napus HOM05D004468 ORTHO05D008180 1.2e-18 97.8 221 33.5
FAN21G2255 Fragaria x ananassa HOM05D004468 ORTHO05D008180 2.1e-18 97.1 224 36.6
BcaC01g00145 Brassica carinata HOM05D004468 ORTHO05D008180 2.7e-18 96.7 221 33.5
FAN11G2204 Fragaria x ananassa HOM05D004468 ORTHO05D008180 3.5e-18 96.3 228 36.8
BcaC06g35475 Brassica carinata HOM05D004468 ORTHO05D008180 1.0e-17 94.7 214 32.7
BolC7t42051H Brassica oleracea HOM05D004468 ORTHO05D008180 1.0e-17 94.7 214 32.7
Carub.0001s2818 Capsella rubella HOM05D004468 ORTHO05D008180 1.3e-17 94.4 223 35.0
CDE02G0697 Ceratophyllum demersum HOM05D004468 ORTHO05D008180 3.9e-17 92.8 197 34.5
Nitab4.5_0001655g0240 Nicotiana tabacum HOM05D004468 ORTHO05D008180 3.9e-17 92.8 218 33.5
CANSAT35G0919 Cannabis sativa HOM05D004468 ORTHO05D008180 6.7e-17 92.0 221 31.2
FAN25G3280 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.1e-16 91.3 228 36.0
BcaB03g12186 Brassica carinata HOM05D004468 ORTHO05D008180 3.3e-16 89.7 238 31.1
Lj1P1184T76 Lonicera japonica HOM05D004468 ORTHO05D008180 3.3e-16 89.7 212 33.5
FAN16G0098 Fragaria x ananassa HOM05D004468 ORTHO05D008180 4.3e-16 89.4 227 36.1
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 7.4e-16 88.6 213 31.9
Actinidia39559 Actinidia chinensis HOM05D004468 ORTHO05D008180 1.3e-15 87.8 246 28.9
Gohir.D10G039900 Gossypium hirsutum HOM05D004468 ORTHO05D008180 3.6e-15 86.3 128 48.4
Lsat_1_v5_gn_1_96101 Lactuca sativa HOM05D004468 ORTHO05D008180 8.1e-15 85.1 192 34.4
RhsimUnG0174800 Rhododendron simsii HOM05D004468 ORTHO05D008180 1.1e-14 84.7 237 33.3
A07p10110 Brassica napus HOM05D004468 ORTHO05D008180 1.8e-14 84.0 207 32.9
Zm00001eb278170 Zea mays HOM05D004468 ORTHO05D008180 1.8e-14 84.0 234 30.3
Nn3g20652 Nelumbo nucifera HOM05D004468 ORTHO05D008180 2.4e-14 83.6 156 42.9
Zm00001eb277350 Zea mays HOM05D004468 ORTHO05D008180 2.0e-13 80.5 181 34.3
THA.LOC104814285 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 2.6e-13 80.1 186 31.2
Migut.L01931 Erythranthe guttata HOM05D001755 ORTHO05D001665 7.6e-13 78.6 215 29.8
Oeu040960.2 Olea europaea HOM05D004468 ORTHO05D008180 1.3e-12 77.8 185 37.3
HanXRQChr04g0118301 Helianthus annuus HOM05D004468 ORTHO05D008180 1.1e-11 74.7 186 31.2
Lsat_1_v5_gn_7_32861 Lactuca sativa HOM05D004468 ORTHO05D008180 2.1e-10 70.5 180 30.0
BraA07t28804Z Brassica rapa HOM05D004468 ORTHO05D008180 6.0e-10 68.9 204 27.0
Duzib093G0625 Durio zibethinus HOM05D001755 ORTHO05D001665 7.9e-10 68.6 234 27.8
Sc26g0000240 Simmondsia chinensis HOM05D001755 ORTHO05D001665 3.0e-09 66.6 207 29.5
Eucgr.D00317 Eucalyptus grandis HOM05D004468 ORTHO05D008180 3.9e-09 66.2 211 28.4
Manes.18G061300 Manihot esculenta HOM05D001755 ORTHO05D001665 6.7e-09 65.5 244 27.5
MELO3C007151.2 Cucumis melo HOM05D004468 ORTHO05D008180 8.7e-09 65.1 235 29.4
Solyc04g076030.3 Solanum lycopersicum HOM05D001755 ORTHO05D001665 8.7e-09 65.1 238 26.1
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 1.5e-08 64.3 111 34.2
PGSC0003DMG400012901 Solanum tuberosum HOM05D001755 ORTHO05D001665 1.9e-08 63.9 238 25.6
SEGI_08629 Sequoiadendron giganteum HOM05D001755 ORTHO05D001665 3.3e-08 63.2 358 24.6
Sc01g0001030 Simmondsia chinensis HOM05D001755 ORTHO05D001665 5.6e-08 62.4 272 26.1
DCAR_012866 Daucus carota HOM05D001755 ORTHO05D001665 7.4e-08 62.0 238 24.8
THA.LOC104806804 Tarenaya hassleriana HOM05D001755 ORTHO05D001665 7.4e-08 62.0 245 26.1
Duzib116G0593 Durio zibethinus HOM05D001755 ORTHO05D001665 1.3e-07 61.2 203 28.6
Actinidia10367 Actinidia chinensis HOM05D001755 ORTHO05D001665 1.6e-07 60.8 249 24.5
Cc10_g15590 Coffea canephora HOM05D001755 ORTHO05D001665 2.1e-07 60.5 271 26.2
Sopen04g029980 Solanum pennellii HOM05D001755 ORTHO05D001665 2.8e-07 60.1 238 24.8
TWI12G0724 Tripterygium wilfordii HOM05D001755 ORTHO05D001665 2.8e-07 60.1 244 26.2
SMO230G0062 Selaginella moellendorffii HOM05D001755 ORTHO05D001665 3.7e-07 59.7 239 28.0
C07p15610 Brassica napus HOM05D004468 ORTHO05D008180 4.8e-07 59.3 100 38.0
Carub.0008s0992 Capsella rubella HOM05D001755 ORTHO05D001665 4.8e-07 59.3 208 27.9
HPP92_004103 Vanilla planifolia HOM05D001755 ORTHO05D001665 4.8e-07 59.3 215 26.5
CAN.G1658.8 Capsicum annuum HOM05D001755 ORTHO05D001665 6.2e-07 58.9 276 23.6
MD05G1288500 Malus domestica HOM05D004468 ORTHO05D008180 6.2e-07 58.9 107 40.2
HPP92_004086 Vanilla planifolia HOM05D001755 ORTHO05D001665 6.2e-07 58.9 215 26.5
Lsat_1_v5_gn_1_2200 Lactuca sativa HOM05D001755 ORTHO05D001665 8.1e-07 58.5 220 26.4
Nn5g29941 Nelumbo nucifera HOM05D001755 ORTHO05D001665 8.1e-07 58.5 209 29.7
ECA236G0629 Erigeron canadensis HOM05D004468 ORTHO05D011136 1.8e-06 57.4 146 32.9
Hund27005 Selenicereus undatus HOM05D001755 ORTHO05D001665 2.4e-06 57.0 256 25.8
Ah.05g170640 Amaranthus hybridus HOM05D001755 ORTHO05D001665 3.1e-06 56.6 242 26.0
AT5G50010 Arabidopsis thaliana HOM05D001755 ORTHO05D001665 3.1e-06 56.6 230 25.7
HanXRQChr12g0382221 Helianthus annuus HOM05D004468 ORTHO05D008180 3.1e-06 56.6 103 42.7
CDE08G0998 Ceratophyllum demersum HOM05D004468 ORTHO05D011136 4.0e-06 56.2 132 37.1
Eucgr.F00406 Eucalyptus grandis HOM05D001755 ORTHO05D001665 4.0e-06 56.2 222 28.4
MELO3C024839.2 Cucumis melo HOM05D001755 ORTHO05D001665 5.3e-06 55.8 267 26.6
Cpa.g.c31184 Carica papaya HOM05D001755 ORTHO05D001665 6.9e-06 55.5 241 25.7
MELO3C011067.2 Cucumis melo HOM05D001755 ORTHO05D001665 9.0e-06 55.1 241 25.3
Peaxi162Scf00281g00710 Petunia axillaris HOM05D001755 ORTHO05D001665 9.0e-06 55.1 173 27.7
Thecc.08G067700 Theobroma cacao HOM05D001755 ORTHO05D001665 9.0e-06 55.1 182 29.7


User provided reference genes

Program Settings