Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0617900 Oryza sativa ssp. japonica HOM05D007177 ORTHO05D008984 2.0e-154 549.3 316 100.0
Zm00001eb159760 Zea mays HOM05D007177 ORTHO05D008984 3.0e-123 445.7 269 82.2
Zm00001eb358300 Zea mays HOM05D007177 ORTHO05D008984 8.9e-123 444.1 268 82.8
Nn8g39274 Nelumbo nucifera HOM05D007177 ORTHO05D008984 1.1e-99 367.5 263 69.2
CiPaw.08G015800 Carya illinoinensis HOM05D007177 ORTHO05D008984 4.0e-99 365.5 241 74.3
TAR383G0793 Trochodendron aralioides HOM05D007177 ORTHO05D008984 6.8e-99 364.8 261 69.7
Dinv35881 Davidia involucrata HOM05D007177 ORTHO05D008984 1.7e-97 360.1 241 73.0
CiPaw.07G217700 Carya illinoinensis HOM05D007177 ORTHO05D008984 3.7e-97 359.0 240 73.3
Lj7A712G53 Lonicera japonica HOM05D007177 ORTHO05D008984 3.7e-97 359.0 269 65.4
QL12p031282 Quercus lobata HOM05D007177 ORTHO05D008984 4.1e-96 355.5 268 67.2
Thecc.09G144000 Theobroma cacao HOM05D007177 ORTHO05D008984 9.2e-96 354.4 243 72.4
Cc08_g08290 Coffea canephora HOM05D007177 ORTHO05D008984 2.1e-95 353.2 260 69.2
Hma1.2p1_0175F.1_g077220 Hydrangea macrophylla HOM05D007177 ORTHO05D008984 7.8e-95 351.3 268 66.0
Eucgr.G02593 Eucalyptus grandis HOM05D007177 ORTHO05D008984 1.0e-94 350.9 272 64.7
CDE01G0003 Ceratophyllum demersum HOM05D007177 ORTHO05D008984 1.3e-94 350.5 268 66.4
MSTRG.11740 Avicennia marina HOM05D007177 ORTHO05D008984 2.3e-94 349.7 263 67.7
CSS0040333 Camellia sinensis var. sinensis HOM05D007177 ORTHO05D008984 2.3e-94 349.7 241 69.3
CAN.G21.13 Capsicum annuum HOM05D007177 ORTHO05D008984 2.3e-94 349.7 243 69.5
Ciclev10009098m.g Citrus clementina HOM05D007177 ORTHO05D008984 3.0e-94 349.4 241 70.5
Duzib168G0166 Durio zibethinus HOM05D007177 ORTHO05D008984 3.9e-94 349.0 243 71.6
HPP92_021881 Vanilla planifolia HOM05D007177 ORTHO05D008984 3.9e-94 349.0 241 69.7
Manes.16G068300 Manihot esculenta HOM05D007177 ORTHO05D008984 1.1e-93 347.4 261 66.3
vmacro11111 Vaccinium macrocarpon HOM05D007177 ORTHO05D008984 1.1e-93 347.4 263 65.4
Aa31LG3G15740 Aethionema arabicum HOM05D007177 ORTHO05D008984 1.5e-93 347.1 272 62.5
Migut.A00273 Erythranthe guttata HOM05D007177 ORTHO05D008984 1.9e-93 346.7 241 71.0
GSVIVG01035726001 Vitis vinifera HOM05D007177 ORTHO05D008984 1.9e-93 346.7 252 66.3
CANSAT25G2101 Cannabis sativa HOM05D007177 ORTHO05D008984 3.3e-93 345.9 241 71.4
Sed0014124 Sechium edule HOM05D007177 ORTHO05D008984 5.6e-93 345.1 261 66.3
Atru.chr7.2324 Acer truncatum HOM05D007177 ORTHO05D008984 7.3e-93 344.7 241 70.5
Solyc08g067840.3 Solanum lycopersicum HOM05D007177 ORTHO05D008984 9.6e-93 344.4 244 69.3
Sopen08g021780 Solanum pennellii HOM05D007177 ORTHO05D008984 9.6e-93 344.4 244 69.3
Sabra06G0192800 Salix brachista HOM05D007177 ORTHO05D008984 1.2e-92 344.0 264 64.8
THA.LOC104815045 Tarenaya hassleriana HOM05D007177 ORTHO05D008984 1.6e-92 343.6 264 63.6
Gohir.A06G048000 Gossypium hirsutum HOM05D007177 ORTHO05D008984 2.8e-92 342.8 243 70.4
Gohir.D06G048000 Gossypium hirsutum HOM05D007177 ORTHO05D008984 2.8e-92 342.8 243 70.4
Gorai.010G053800 Gossypium raimondii HOM05D007177 ORTHO05D008984 2.8e-92 342.8 243 70.4
Potri.006G246500 Populus trichocarpa HOM05D007177 ORTHO05D008984 3.6e-92 342.4 264 64.8
RcHm_v2.0_Chr6g0312741 Rosa chinensis HOM05D007177 ORTHO05D008984 3.6e-92 342.4 241 70.1
C09p65410 Brassica napus HOM05D007177 ORTHO05D008984 4.7e-92 342.0 259 65.3
BolC9t59366H Brassica oleracea HOM05D007177 ORTHO05D008984 4.7e-92 342.0 259 65.3
BcaC04g19225 Brassica carinata HOM05D007177 ORTHO05D008984 6.2e-92 341.7 259 65.3
MD08G1136300 Malus domestica HOM05D007177 ORTHO05D008984 6.2e-92 341.7 258 65.9
Sp6g32150 Schrenkiella parvula HOM05D007177 ORTHO05D008984 2.4e-91 339.7 269 63.6
A10p26300 Brassica napus HOM05D007177 ORTHO05D008984 3.1e-91 339.3 243 66.3
BraA10t44687Z Brassica rapa HOM05D007177 ORTHO05D008984 3.1e-91 339.3 243 66.3
Nitab4.5_0000125g0190 Nicotiana tabacum HOM05D007177 ORTHO05D008984 3.1e-91 339.3 239 67.8
TWI32G0279 Tripterygium wilfordii HOM05D007177 ORTHO05D008984 4.0e-91 339.0 267 62.2
Thhalv10014231m.g Eutrema salsugineum HOM05D007177 ORTHO05D008984 6.8e-91 338.2 269 63.2
Peaxi162Scf00105g01429 Petunia axillaris HOM05D007177 ORTHO05D008984 6.8e-91 338.2 213 74.2
SalBow4G1425 Salvia bowleyana HOM05D007177 ORTHO05D008984 6.8e-91 338.2 263 66.2
CsaV3_2G031600 Cucumis sativus L. HOM05D007177 ORTHO05D008984 8.9e-91 337.8 261 65.5
FAN27G1396 Fragaria x ananassa HOM05D007177 ORTHO05D008984 2.0e-90 336.7 241 68.5
MELO3C011212.2 Cucumis melo HOM05D007177 ORTHO05D008984 2.6e-90 336.3 261 65.1
Nitab4.5_0009600g0010 Nicotiana tabacum HOM05D007177 ORTHO05D008984 2.6e-90 336.3 239 67.4
Rhsim02G0187100 Rhododendron simsii HOM05D007177 ORTHO05D008984 2.6e-90 336.3 263 65.4
FvH4_2g30170 Fragaria vesca HOM05D007177 ORTHO05D008984 3.4e-90 335.9 241 68.0
Hund26404 Selenicereus undatus HOM05D007177 ORTHO05D008984 3.4e-90 335.9 241 68.5
MD15G1115400 Malus domestica HOM05D007177 ORTHO05D008984 4.4e-90 335.5 260 64.2
Carub.0006s0990 Capsella rubella HOM05D007177 ORTHO05D008984 7.6e-90 334.7 269 63.2
Cpa.g.sc91.5 Carica papaya HOM05D007177 ORTHO05D008984 7.6e-90 334.7 222 71.2
AL6G22110 Arabidopsis lyrata HOM05D007177 ORTHO05D008984 2.9e-89 332.8 269 62.5
Lsat_1_v5_gn_6_10880 Lactuca sativa HOM05D003107 ORTHO05D008984 3.8e-89 332.4 241 66.0
DCAR_006262 Daucus carota HOM05D007177 ORTHO05D008984 6.4e-89 331.6 264 62.9
BcaB08g37058 Brassica carinata HOM05D007177 ORTHO05D008984 1.1e-88 330.9 271 62.0
AT5G11450 Arabidopsis thaliana HOM05D007177 ORTHO05D008984 1.4e-88 330.5 269 61.7
PSO063G2030 Papaver somniferum HOM05D007177 ORTHO05D008984 4.2e-88 328.9 243 65.4
PSO782G2748 Papaver somniferum HOM05D007177 ORTHO05D008984 7.1e-88 328.2 243 65.4
HanXRQChr02g0048101 Helianthus annuus HOM05D007177 ORTHO05D008984 9.3e-88 327.8 253 62.5
arahy.Tifrunner.gnm1.ann1.JYH77Y Arachis hypogaea HOM05D007177 ORTHO05D008984 1.6e-87 327.0 241 65.1
CARHR201780 Cardamine hirsuta HOM05D007177 ORTHO05D008984 1.6e-87 327.0 268 61.6
ECA233G2849 Erigeron canadensis HOM05D003107 ORTHO05D008984 1.0e-86 324.3 241 64.3
Lj1g0018262 Lotus japonicus HOM05D007177 ORTHO05D008984 1.7e-86 323.6 245 64.9
Medtr3g108040 Medicago truncatula HOM05D007177 ORTHO05D008984 3.9e-86 322.4 235 66.4
AUR62032383 Chenopodium quinoa HOM05D007177 ORTHO05D008984 6.6e-86 321.6 245 64.1
unitig_748.g7498 Utricularia gibba HOM05D007177 ORTHO05D008984 1.5e-85 320.5 268 63.1
TPR.G34677 Trifolium pratense HOM05D007177 ORTHO05D008984 3.3e-85 319.3 241 65.1
Glyma.06G073600 Glycine max HOM05D007177 ORTHO05D008984 5.6e-85 318.5 241 65.1
Lalb_Chr23g0269021 Lupinus albus HOM05D007177 ORTHO05D008984 5.6e-85 318.5 241 63.9
Ah.10g025430 Amaranthus hybridus HOM05D007177 ORTHO05D008984 1.6e-84 317.0 241 62.7
Phvul.009G098000 Phaseolus vulgaris HOM05D007177 ORTHO05D008984 2.8e-84 316.2 241 65.1
Actinidia13290 Actinidia chinensis HOM05D007177 ORTHO05D008984 9.0e-83 311.2 224 68.3
VMungo1309G2383 Vigna mungo HOM05D007177 ORTHO05D008984 2.0e-82 310.1 241 64.3
Psat5g027720 Pisum sativum HOM05D007177 ORTHO05D008984 2.2e-81 306.6 211 67.3
AUR62024834 Chenopodium quinoa HOM05D007177 ORTHO05D008984 6.4e-81 305.1 290 55.2
ATR0037G062 Amborella trichopoda HOM05D007177 ORTHO05D008984 1.3e-78 297.4 188 76.6
PGR102G2243 Punica granatum HOM05D007177 ORTHO05D008984 6.6e-78 295.0 241 63.5
Aqoxy7G01836 Aquilegia oxysepala HOM05D007177 ORTHO05D008984 5.6e-77 292.0 232 64.2
arahy.Tifrunner.gnm1.ann1.22L7FB Arachis hypogaea HOM05D007177 ORTHO05D008984 2.1e-76 290.0 241 61.0
ClCG08G012880 Citrullus lanatus HOM05D007177 ORTHO05D008984 6.2e-76 288.5 329 50.5
Pp3c27_2770 Physcomitrium patens HOM05D007177 ORTHO05D008984 5.3e-75 285.4 246 58.1
COL.COLO4_24067 Corchorus olitorius HOM05D007177 ORTHO05D008984 6.4e-73 278.5 243 60.9
Haze_21624 Corylus avellana HOM05D007177 ORTHO05D008984 8.4e-73 278.1 224 62.1
Glyma.04G072300 Glycine max HOM05D007177 ORTHO05D008984 1.2e-71 274.2 215 64.2
FAN24G2430 Fragaria x ananassa HOM05D007177 ORTHO05D008984 1.8e-70 270.4 217 64.5
Mapoly0103s0019 Marchantia polymorpha HOM05D007177 ORTHO05D008984 8.1e-68 261.5 258 50.4
Prupe.1G466600 Prunus persica HOM05D007177 ORTHO05D008984 1.1e-67 261.2 216 63.4
Cfa013211 Carpinus fangiana HOM05D007177 ORTHO05D008984 2.2e-65 253.4 158 77.2
Ca_15697_v3 Cicer arietinum L. HOM05D007177 ORTHO05D008984 1.5e-61 240.7 200 61.0
FAN15G3007 Fragaria x ananassa HOM05D007177 ORTHO05D008984 2.1e-60 236.9 209 59.8
FAN20G1087 Fragaria x ananassa HOM05D007177 ORTHO05D008984 2.1e-60 236.9 209 59.8
AUR62011224 Chenopodium quinoa HOM05D007177 ORTHO05D008984 2.8e-60 236.5 167 67.7
SGA_v2.0_scaffold27G11496 Striga asiatica HOM05D007177 ORTHO05D008984 4.1e-59 232.6 220 58.2
Sc23g0007000 Simmondsia chinensis HOM05D007177 ORTHO05D008984 1.3e-54 217.6 176 63.1
EL10Ac2g02536 Beta vulgaris HOM05D007177 ORTHO05D008984 1.8e-54 217.2 289 44.3
SEGI_07055 Sequoiadendron giganteum HOM05D007177 ORTHO05D008984 3.7e-44 183.0 130 66.9
Gohir.D06G048101 Gossypium hirsutum HOM05D007177 ORTHO05D008984 7.7e-42 175.3 101 78.2
Cre07.g328200 Chlamydomonas reinhardtii HOM05D007177 ORTHO05D008984 2.5e-40 170.2 275 37.1
Hma1.2p1_0175F.1_g077230 Hydrangea macrophylla HOM05D007177 ORTHO05D008984 4.1e-35 152.9 107 68.2
MCO07G393 Micromonas commoda HOM05D007177 ORTHO05D008984 4.4e-29 132.9 202 35.1
AagrBONN_evm.TU.Sc2ySwM_117.3794 Anthoceros agrestis HOM05D007177 ORTHO05D008984 7.0e-11 72.4 101 37.6
Actinidia13424 Actinidia chinensis HOM05D007177 ORTHO05D008984 9.5e-08 62.0 56 53.6


User provided reference genes

Program Settings