Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 1.1e-129 466.8 267 100.0
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 2.9e-98 362.5 266 81.2
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 4.2e-73 278.9 236 66.5
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 4.8e-69 265.4 246 63.4
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 1.8e-68 263.5 246 61.8
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.1e-68 262.7 246 63.0
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 3.1e-68 262.7 255 57.6
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 9.0e-68 261.2 247 60.7
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 1.2e-67 260.8 246 62.6
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 2.6e-67 259.6 247 58.7
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 3.4e-67 259.2 244 61.5
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 5.8e-67 258.5 244 61.5
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 5.8e-67 258.5 245 59.6
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 9.9e-67 257.7 244 61.1
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 6.4e-66 255.0 240 61.2
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 6.4e-66 255.0 251 57.4
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 1.1e-65 254.2 240 60.8
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 1.9e-65 253.4 240 60.8
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 3.2e-65 252.7 251 56.6
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 9.3e-65 251.1 235 59.6
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 1.6e-64 250.4 248 58.1
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 2.1e-64 250.0 251 56.6
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 2.7e-64 249.6 246 56.9
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 2.7e-64 249.6 240 58.8
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 3.5e-64 249.2 236 59.7
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 4.6e-64 248.8 236 59.7
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 7.9e-64 248.1 256 55.5
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 7.9e-64 248.1 255 56.9
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 7.9e-64 248.1 249 57.4
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 2.3e-63 246.5 239 59.0
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 2.3e-63 246.5 249 57.4
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 5.1e-63 245.4 245 58.0
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 8.7e-63 244.6 245 57.6
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 8.7e-63 244.6 239 59.0
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 1.1e-62 244.2 236 58.5
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 1.1e-62 244.2 235 58.3
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 1.5e-62 243.8 250 60.0
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 1.5e-62 243.8 239 57.3
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 2.5e-62 243.0 254 58.3
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 4.3e-62 242.3 239 59.0
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 5.6e-62 241.9 241 58.5
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 7.4e-62 241.5 251 57.0
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 7.4e-62 241.5 239 56.5
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 1.6e-61 240.4 251 55.8
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 2.1e-61 240.0 244 56.6
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 3.7e-61 239.2 236 56.8
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 3.7e-61 239.2 243 55.1
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 4.8e-61 238.8 251 55.8
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 6.2e-61 238.4 245 56.3
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 1.1e-60 237.7 239 58.2
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 1.4e-60 237.3 236 60.6
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 1.8e-60 236.9 248 56.0
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.8e-60 236.9 238 58.0
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 1.8e-60 236.9 245 53.9
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 3.1e-60 236.1 239 56.9
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 9.0e-60 234.6 236 59.7
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 1.5e-59 233.8 237 56.5
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 3.4e-59 232.6 244 54.9
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 4.5e-59 232.3 251 55.0
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 4.5e-59 232.3 243 55.1
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 2.2e-58 229.9 236 55.9
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 2.9e-58 229.6 236 56.4
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 8.4e-58 228.0 228 56.6
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 1.1e-57 227.6 258 52.7
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 1.4e-57 227.3 245 52.7
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 1.9e-57 226.9 240 55.8
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 1.9e-57 226.9 249 53.4
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 3.2e-57 226.1 242 54.1
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 4.2e-57 225.7 245 53.9
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 7.1e-57 224.9 235 59.6
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 9.3e-57 224.6 248 53.2
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 9.3e-57 224.6 227 56.8
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 9.3e-57 224.6 236 55.1
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 2.7e-56 223.0 238 54.2
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 6.0e-56 221.9 250 49.6
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 6.0e-56 221.9 236 53.8
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 6.0e-56 221.9 263 51.0
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.0e-55 221.1 190 64.7
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 1.0e-55 221.1 236 55.1
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 1.8e-55 220.3 239 54.8
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 3.0e-55 219.5 240 53.3
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 3.0e-55 219.5 236 58.1
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 5.1e-55 218.8 241 53.1
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 6.7e-55 218.4 236 53.4
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 1.1e-54 217.6 236 54.2
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 3.3e-54 216.1 227 53.3
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 4.3e-54 215.7 232 54.3
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 4.3e-54 215.7 239 53.1
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 4.3e-54 215.7 242 52.1
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 4.3e-54 215.7 241 51.5
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 1.3e-53 214.2 241 53.1
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 1.6e-53 213.8 242 51.7
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 6.3e-53 211.8 237 53.2
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 6.3e-53 211.8 237 53.2
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 8.2e-53 211.5 253 49.0
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 1.1e-52 211.1 251 50.6
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.4e-52 210.7 237 53.2
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 2.4e-52 209.9 237 51.9
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 5.3e-52 208.8 241 51.5
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 2.5e-49 199.9 239 50.2
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 5.5e-49 198.7 241 50.2
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 1.0e-47 194.5 239 48.5
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 1.0e-47 194.5 239 48.5
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 6.7e-47 191.8 238 48.3
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 1.1e-46 191.0 234 48.3
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 2.8e-45 186.4 238 47.1
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 6.9e-44 181.8 238 47.1
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 2.6e-43 179.9 238 46.6
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 2.6e-43 179.9 238 46.6
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 3.8e-42 176.0 239 45.6
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 4.2e-41 172.6 117 74.4
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 9.4e-41 171.4 207 50.7
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 1.4e-36 157.5 184 51.1
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 7.2e-33 145.2 118 61.0
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 1.4e-31 141.0 182 46.2
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 1.5e-25 120.9 117 54.7
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 3.2e-25 119.8 246 37.8
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 8.0e-24 115.2 182 39.0
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 4.0e-23 112.8 140 50.0
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 4.0e-23 112.8 204 37.7
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 6.3e-21 105.5 75 70.7
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 5.9e-19 99.0 79 68.4
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 1.6e-16 90.9 87 54.0
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 2.6e-14 83.6 149 38.3
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 1.3e-10 71.2 46 69.6
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 8.5e-10 68.6 142 35.9
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 4.0e-07 59.7 137 32.8
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 2.0e-06 57.4 99 39.4


User provided reference genes

Program Settings