Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 2.6e-43 178.3 90 100.0
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 7.3e-38 160.2 87 95.4
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 5.2e-28 127.5 87 67.8
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.3e-26 122.9 84 69.0
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 2.2e-26 122.1 87 67.8
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 8.3e-26 120.2 87 67.8
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 1.4e-25 119.4 82 68.3
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 2.4e-25 118.6 87 66.7
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 3.2e-25 118.2 85 68.2
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 7.1e-25 117.1 88 64.8
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 7.1e-25 117.1 85 69.4
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 1.2e-24 116.3 88 63.6
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 1.2e-24 116.3 85 67.1
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 2.1e-24 115.5 87 66.7
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 2.1e-24 115.5 87 66.7
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 2.1e-24 115.5 85 67.1
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 2.7e-24 115.2 86 67.4
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 3.5e-24 114.8 88 62.5
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 4.6e-24 114.4 88 63.6
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 4.6e-24 114.4 85 63.5
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 4.6e-24 114.4 85 67.1
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 6.0e-24 114.0 85 64.7
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 7.8e-24 113.6 85 67.1
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 1.0e-23 113.2 87 63.2
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 1.0e-23 113.2 88 63.6
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 1.0e-23 113.2 85 63.5
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 1.0e-23 113.2 85 63.5
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.3e-23 112.8 87 64.4
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 1.3e-23 112.8 84 66.7
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 2.3e-23 112.1 85 63.5
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 3.9e-23 111.3 85 65.9
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 5.1e-23 110.9 85 64.7
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 6.6e-23 110.5 83 65.1
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 6.6e-23 110.5 83 68.7
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 6.6e-23 110.5 88 60.2
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 6.6e-23 110.5 85 63.5
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 1.5e-22 109.4 85 62.4
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.9e-22 109.0 88 62.5
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 2.5e-22 108.6 85 64.7
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 3.3e-22 108.2 85 64.7
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 4.3e-22 107.8 88 62.5
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 4.3e-22 107.8 86 60.5
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 4.3e-22 107.8 85 61.2
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 5.6e-22 107.5 88 62.5
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 5.6e-22 107.5 85 61.2
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 7.3e-22 107.1 88 61.4
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 7.3e-22 107.1 87 60.9
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 9.5e-22 106.7 83 63.9
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 9.5e-22 106.7 87 64.4
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 1.6e-21 105.9 83 63.9
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.6e-21 105.9 88 61.4
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 1.6e-21 105.9 87 59.8
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 1.6e-21 105.9 85 61.2
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 2.1e-21 105.5 84 58.3
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 2.1e-21 105.5 86 61.6
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 2.1e-21 105.5 86 61.6
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 2.1e-21 105.5 87 60.9
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 2.8e-21 105.1 85 63.5
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 2.8e-21 105.1 84 63.1
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 2.8e-21 105.1 88 60.2
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 2.8e-21 105.1 87 62.1
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 3.6e-21 104.8 87 59.8
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 3.6e-21 104.8 85 60.0
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 4.7e-21 104.4 88 60.2
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 4.7e-21 104.4 88 60.2
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 4.7e-21 104.4 88 60.2
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 4.7e-21 104.4 83 61.4
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 4.7e-21 104.4 88 61.4
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 4.7e-21 104.4 83 63.9
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 6.2e-21 104.0 86 58.1
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 6.2e-21 104.0 83 63.9
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 8.1e-21 103.6 87 57.5
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 8.1e-21 103.6 87 57.5
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 8.1e-21 103.6 85 61.2
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 8.1e-21 103.6 85 60.0
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 1.1e-20 103.2 88 59.1
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 1.1e-20 103.2 88 59.1
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 1.1e-20 103.2 83 62.7
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 1.1e-20 103.2 85 61.2
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 1.4e-20 102.8 83 62.7
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 1.4e-20 102.8 85 58.8
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 1.4e-20 102.8 88 59.1
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 1.8e-20 102.4 88 59.1
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 1.8e-20 102.4 88 59.1
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 1.8e-20 102.4 88 59.1
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 1.8e-20 102.4 88 59.1
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 1.8e-20 102.4 88 59.1
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 1.8e-20 102.4 88 59.1
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 1.8e-20 102.4 85 61.2
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 2.4e-20 102.1 85 61.2
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 3.1e-20 101.7 83 61.4
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 3.1e-20 101.7 83 61.4
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 3.1e-20 101.7 91 59.3
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 3.1e-20 101.7 86 59.3
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 4.0e-20 101.3 87 57.5
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 4.0e-20 101.3 74 67.6
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 5.2e-20 100.9 88 58.0
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 8.9e-20 100.1 88 60.2
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 8.9e-20 100.1 88 60.2
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 8.9e-20 100.1 85 64.7
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 8.9e-20 100.1 85 64.7
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 8.9e-20 100.1 85 60.0
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.2e-19 99.8 86 62.8
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 1.5e-19 99.4 85 57.6
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 2.0e-19 99.0 88 59.1
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 2.0e-19 99.0 85 60.0
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 2.6e-19 98.6 85 58.8
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 7.6e-19 97.1 71 67.6
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 2.2e-18 95.5 88 59.1
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 4.9e-18 94.4 88 58.0
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 6.4e-18 94.0 116 46.6
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 1.1e-17 93.2 83 57.8
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 1.4e-17 92.8 71 64.8
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 1.4e-17 92.8 88 56.8
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 3.2e-17 91.7 84 57.1
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 4.2e-17 91.3 84 54.8
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 9.2e-17 90.1 84 53.6
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 2.7e-16 88.6 65 70.8
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 1.0e-15 86.7 71 59.2
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.3e-15 86.3 84 51.2
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 3.0e-15 85.1 84 51.2
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 3.0e-15 85.1 84 50.0
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 1.1e-14 83.2 85 50.6
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 1.1e-14 83.2 88 50.0
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 3.3e-14 81.6 71 60.6
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 4.3e-14 81.3 88 48.9
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 9.6e-14 80.1 84 50.0
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 9.6e-14 80.1 84 50.0
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 3.4e-11 71.6 83 45.8
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 7.6e-11 70.5 83 44.6
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 9.9e-11 70.1 80 48.8
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 2.9e-10 68.6 82 41.5
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 2.9e-10 68.6 58 58.6
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 1.1e-09 66.6 83 48.2
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 1.4e-09 66.2 96 42.7
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.9e-09 65.9 85 45.9
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 1.6e-08 62.8 50 50.0
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 1.3e-07 59.7 69 43.5
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 5.1e-07 57.8 41 68.3
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 1.5e-06 56.2 70 41.4


User provided reference genes

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