Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0252600 Oryza sativa ssp. japonica HOM05D007717 ORTHO05D009694 2.0e-144 515.8 267 100.0
Zm00001eb127510 Zea mays HOM05D007717 ORTHO05D009694 1.1e-86 323.9 268 67.2
TAR362G0991 Trochodendron aralioides HOM05D007717 ORTHO05D009694 2.4e-73 279.6 205 62.0
ATR0693G230 Amborella trichopoda HOM05D007717 ORTHO05D009694 2.3e-71 273.1 205 61.0
SalBow2G0697 Salvia bowleyana HOM05D007717 ORTHO05D009694 1.1e-70 270.8 203 64.0
EL10As5g23606 Beta vulgaris HOM05D007717 ORTHO05D009694 5.6e-70 268.5 210 60.5
Actinidia17924 Actinidia chinensis HOM05D007717 ORTHO05D009694 9.6e-70 267.7 210 59.5
Migut.N00924 Erythranthe guttata HOM05D007717 ORTHO05D009694 9.6e-70 267.7 202 61.9
Oeu038956.1 Olea europaea HOM05D007717 ORTHO05D009694 9.6e-70 267.7 199 62.8
Rhsim13G0002400 Rhododendron simsii HOM05D007717 ORTHO05D009694 1.3e-69 267.3 210 59.5
SGA_v2.0_scaffold198G41108 Striga asiatica HOM05D007717 ORTHO05D009694 1.6e-69 266.9 204 62.3
Sed0016465 Sechium edule HOM05D007717 ORTHO05D009694 6.2e-69 265.0 211 59.7
PSO210G2166 Papaver somniferum HOM05D007717 ORTHO05D009694 1.4e-68 263.8 204 59.8
Manes.05G012500 Manihot esculenta HOM05D007717 ORTHO05D009694 1.8e-68 263.5 246 52.8
Ciclev10021685m.g Citrus clementina HOM05D007717 ORTHO05D009694 3.1e-68 262.7 210 57.1
HanXRQChr04g0106271 Helianthus annuus HOM05D007717 ORTHO05D009694 4.0e-68 262.3 200 63.0
TWI14G0584 Tripterygium wilfordii HOM05D007717 ORTHO05D009694 4.0e-68 262.3 208 60.6
GSVIVG01028159001 Vitis vinifera HOM05D007717 ORTHO05D009694 4.0e-68 262.3 201 60.2
ClCG10G011620 Citrullus lanatus HOM05D007717 ORTHO05D009694 5.3e-68 261.9 211 58.3
Potri.014G117500 Populus trichocarpa HOM05D007717 ORTHO05D009694 6.9e-68 261.5 205 58.5
MSTRG.15592 Avicennia marina HOM05D007717 ORTHO05D009694 9.0e-68 261.2 192 64.1
THA.LOC104825934 Tarenaya hassleriana HOM05D007717 ORTHO05D009694 9.0e-68 261.2 241 55.2
Haze_17022 Corylus avellana HOM05D007717 ORTHO05D009694 1.3e-66 257.3 209 57.9
Eucgr.K03559 Eucalyptus grandis HOM05D007717 ORTHO05D009694 1.3e-66 257.3 246 55.3
Hma1.2p1_0408F.1_g146470 Hydrangea macrophylla HOM05D007717 ORTHO05D009694 1.3e-66 257.3 206 57.3
CiPaw.08G086800 Carya illinoinensis HOM05D007717 ORTHO05D009694 2.2e-66 256.5 208 57.2
CSS0048227 Camellia sinensis var. sinensis HOM05D007717 ORTHO05D009694 3.8e-66 255.8 254 51.6
Lalb_Chr06g0167011 Lupinus albus HOM05D007717 ORTHO05D009694 3.8e-66 255.8 206 58.3
Nitab4.5_0004006g0040 Nicotiana tabacum HOM05D007717 ORTHO05D009694 3.8e-66 255.8 261 54.4
ECA236G3512 Erigeron canadensis HOM05D007717 ORTHO05D009694 4.9e-66 255.4 208 57.7
CsaV3_3G026540 Cucumis sativus L. HOM05D007717 ORTHO05D009694 6.4e-66 255.0 211 57.3
unitig_748.g7768 Utricularia gibba HOM05D007717 ORTHO05D009694 6.4e-66 255.0 202 59.9
Cc01_g21670 Coffea canephora HOM05D007717 ORTHO05D009694 1.1e-65 254.2 199 60.8
Glyma.02G010200 Glycine max HOM05D007717 ORTHO05D009694 1.1e-65 254.2 206 56.3
MELO3C012927.2 Cucumis melo HOM05D007717 ORTHO05D009694 1.4e-65 253.8 224 54.0
AUR62024600 Chenopodium quinoa HOM05D007717 ORTHO05D009694 1.9e-65 253.4 203 59.1
Duzib138G0230 Durio zibethinus HOM05D007717 ORTHO05D009694 1.9e-65 253.4 212 55.2
VMungo0720G1298 Vigna mungo HOM05D007717 ORTHO05D009694 1.9e-65 253.4 203 56.2
arahy.Tifrunner.gnm1.ann1.P1ZICW Arachis hypogaea HOM05D007717 ORTHO05D009694 4.2e-65 252.3 201 57.7
QL12p018825 Quercus lobata HOM05D007717 ORTHO05D009694 5.5e-65 251.9 203 57.1
RcHm_v2.0_Chr3g0487001 Rosa chinensis HOM05D007717 ORTHO05D009694 7.1e-65 251.5 208 56.7
Medtr1g086585 Medicago truncatula HOM05D007717 ORTHO05D009694 1.2e-64 250.8 199 58.3
Prupe.3G006900 Prunus persica HOM05D007717 ORTHO05D009694 1.2e-64 250.8 205 57.1
Phvul.007G212300 Phaseolus vulgaris HOM05D007717 ORTHO05D009694 1.6e-64 250.4 202 55.9
Atru.chr5.944 Acer truncatum HOM05D007717 ORTHO05D009694 3.5e-64 249.2 210 55.2
Nitab4.5_0002828g0050 Nicotiana tabacum HOM05D007717 ORTHO05D009694 3.5e-64 249.2 202 61.9
Aqoxy2G02636 Aquilegia oxysepala HOM05D007717 ORTHO05D009694 4.6e-64 248.8 190 60.0
Lj5g0017185 Lotus japonicus HOM05D007717 ORTHO05D009694 7.9e-64 248.1 210 55.2
Thecc.01G318800 Theobroma cacao HOM05D007717 ORTHO05D009694 1.8e-63 246.9 212 53.8
Cfa001519 Carpinus fangiana HOM05D007717 ORTHO05D009694 2.3e-63 246.5 217 54.8
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 2.3e-63 246.5 199 57.8
C06p42310 Brassica napus HOM05D007717 ORTHO05D009694 6.7e-63 245.0 204 57.8
FvH4_1g26780 Fragaria vesca HOM05D007717 ORTHO05D009694 1.1e-62 244.2 205 57.1
Psat6g160600 Pisum sativum HOM05D007717 ORTHO05D009694 1.1e-62 244.2 203 55.7
Carub.0006s3530 Capsella rubella HOM05D007717 ORTHO05D009694 2.5e-62 243.0 204 58.3
Gohir.D07G134000 Gossypium hirsutum HOM05D007717 ORTHO05D009694 2.5e-62 243.0 203 54.2
Gorai.001G145600 Gossypium raimondii HOM05D007717 ORTHO05D009694 2.5e-62 243.0 203 54.2
AT4G01935 Arabidopsis thaliana HOM05D007717 ORTHO05D009694 3.3e-62 242.7 240 52.9
Thhalv10028874m.g Eutrema salsugineum HOM05D007717 ORTHO05D009694 4.3e-62 242.3 204 57.8
A07p34270 Brassica napus HOM05D007717 ORTHO05D009694 5.6e-62 241.9 242 51.7
BolC6t39198H Brassica oleracea HOM05D007717 ORTHO05D009694 1.3e-61 240.7 242 52.1
BraA07t31055Z Brassica rapa HOM05D007717 ORTHO05D009694 1.3e-61 240.7 242 51.7
FAN19G0412 Fragaria x ananassa HOM05D007717 ORTHO05D009694 1.3e-61 240.7 207 57.0
MD09G1286700 Malus domestica HOM05D007717 ORTHO05D009694 1.3e-61 240.7 213 54.0
Sp6g01810 Schrenkiella parvula HOM05D007717 ORTHO05D009694 2.8e-61 239.6 253 50.2
CAN.G1209.17 Capsicum annuum HOM05D007717 ORTHO05D009694 1.8e-60 236.9 201 58.7
Aa31LG5G1580 Aethionema arabicum HOM05D007717 ORTHO05D009694 6.9e-60 235.0 254 49.2
Mapoly0015s0128 Marchantia polymorpha HOM05D007717 ORTHO05D009694 7.6e-59 231.5 201 54.2
AagrBONN_evm.TU.Sc2ySwM_344.3558 Anthoceros agrestis HOM05D007717 ORTHO05D009694 5.5e-57 225.3 201 53.7
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 9.3e-57 224.6 185 59.5
Pp3c5_22240 Physcomitrium patens HOM05D007717 ORTHO05D009694 3.9e-55 219.2 197 55.3
Lj2C1210T5 Lonicera japonica HOM05D007717 ORTHO05D009694 2.1e-53 213.4 265 46.8
SMO117G0327 Selaginella moellendorffii HOM05D007717 ORTHO05D009694 2.8e-53 213.0 201 51.7
Sabra14G0087200 Salix brachista HOM05D007717 ORTHO05D009694 3.7e-53 212.6 180 56.7
PGR044G1932 Punica granatum HOM05D007717 ORTHO05D009694 1.4e-52 210.7 178 57.9
Nn3g21819 Nelumbo nucifera HOM05D007717 ORTHO05D009694 2.9e-50 203.0 158 63.3
BcaB04g18936 Brassica carinata HOM05D007717 ORTHO05D009694 1.1e-49 201.1 242 47.1
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 8.7e-47 191.4 153 59.5
Ah.11g049130 Amaranthus hybridus HOM05D007717 ORTHO05D009694 2.8e-45 186.4 206 44.7
Hund02948 Selenicereus undatus HOM05D007717 ORTHO05D009694 2.8e-45 186.4 156 60.9
Dinv00087 Davidia involucrata HOM05D007717 ORTHO05D009694 2.7e-40 169.9 120 60.0
Gohir.A07G129700 Gossypium hirsutum HOM05D007717 ORTHO05D009694 2.0e-35 153.7 142 53.5
MBI18_g27382_MAGBIO Magnolia biondii HOM05D007717 ORTHO05D009694 2.6e-35 153.3 203 41.4
BcaC08g46194 Brassica carinata HOM05D007717 ORTHO05D009694 2.1e-32 143.7 94 62.8
vmacro02381 Vaccinium macrocarpon HOM05D007717 ORTHO05D009694 2.2e-29 133.7 128 54.7
arahy.Tifrunner.gnm1.ann1.259I69 Arachis hypogaea HOM05D007717 ORTHO05D009694 3.7e-29 132.9 201 37.3
Cre17.g729900 Chlamydomonas reinhardtii HOM05D007717 ORTHO05D009694 1.4e-28 131.0 197 40.6
Actinidia37701 Actinidia chinensis HOM05D007717 ORTHO05D009694 1.8e-28 130.6 173 45.1
Cpa.g.sc18.99 Carica papaya HOM05D007717 ORTHO05D009694 5.2e-23 112.5 99 56.6
Sc17g0000260 Simmondsia chinensis HOM05D007717 ORTHO05D009694 6.3e-21 105.5 104 52.9
FAN28G2335 Fragaria x ananassa HOM05D007717 ORTHO05D009694 8.2e-21 105.1 97 55.7
FAN23G2736 Fragaria x ananassa HOM05D007717 ORTHO05D009694 3.1e-20 103.2 79 58.2
BcaC08g46195 Brassica carinata HOM05D007717 ORTHO05D009694 5.0e-18 95.9 99 53.5
CBR_g40482 Chara braunii HOM05D001161 ORTHO05D000497 3.8e-10 69.7 77 46.8
CARHR249750 Cardamine hirsuta HOM05D007717 ORTHO05D009694 6.1e-08 62.4 99 42.4


User provided reference genes

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