Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 2.2e-129 465.7 242 100.0
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 5.0e-33 145.6 170 51.2
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.5e-29 134.0 167 49.1
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 4.4e-29 132.5 169 43.8
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 4.4e-29 132.5 191 43.5
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 9.7e-29 131.3 190 41.6
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 4.8e-28 129.0 167 43.1
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 4.8e-28 129.0 160 47.5
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 4.1e-27 125.9 162 44.4
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 4.1e-27 125.9 202 40.1
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 4.1e-27 125.9 190 40.5
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 5.3e-27 125.6 169 43.2
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 1.2e-26 124.4 199 40.2
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 1.6e-26 124.0 186 39.2
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 1.6e-26 124.0 191 39.8
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 2.7e-26 123.2 165 43.0
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.7e-26 123.2 183 39.9
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.7e-26 123.2 164 42.7
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 2.7e-26 123.2 164 42.7
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 2.7e-26 123.2 169 42.0
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 2.7e-26 123.2 166 43.4
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 3.5e-26 122.9 180 40.0
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 3.5e-26 122.9 207 38.2
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 3.5e-26 122.9 166 42.8
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 4.5e-26 122.5 161 45.3
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 4.5e-26 122.5 168 44.0
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 4.5e-26 122.5 180 41.1
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 5.9e-26 122.1 175 43.4
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 5.9e-26 122.1 166 43.4
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 5.9e-26 122.1 177 40.7
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 5.9e-26 122.1 179 41.3
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 7.7e-26 121.7 166 42.2
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 7.7e-26 121.7 168 45.2
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 1.0e-25 121.3 197 40.6
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 1.3e-25 120.9 161 44.1
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 1.3e-25 120.9 175 41.1
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 1.3e-25 120.9 165 44.2
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.2e-25 120.2 198 37.9
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 2.9e-25 119.8 179 40.8
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 3.8e-25 119.4 166 40.4
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 3.8e-25 119.4 218 38.5
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 5.0e-25 119.0 158 43.0
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 6.5e-25 118.6 189 39.2
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 6.5e-25 118.6 169 42.0
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 6.5e-25 118.6 168 42.3
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 6.5e-25 118.6 176 42.0
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 6.5e-25 118.6 175 42.3
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 8.5e-25 118.2 166 41.6
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 8.5e-25 118.2 167 41.3
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 1.1e-24 117.9 169 43.8
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 1.5e-24 117.5 212 38.2
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 1.5e-24 117.5 188 38.8
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.5e-24 117.5 188 38.8
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 1.5e-24 117.5 198 40.4
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 1.9e-24 117.1 169 39.6
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.9e-24 117.1 166 42.8
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 1.9e-24 117.1 169 40.8
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 1.9e-24 117.1 124 51.6
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 2.5e-24 116.7 181 39.8
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 2.5e-24 116.7 200 36.5
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 3.2e-24 116.3 199 39.2
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 4.2e-24 115.9 160 43.8
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 5.5e-24 115.5 167 40.1
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 5.5e-24 115.5 167 40.1
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 5.5e-24 115.5 167 40.1
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 7.2e-24 115.2 197 38.1
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 7.2e-24 115.2 220 36.4
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 9.4e-24 114.8 168 42.3
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 1.2e-23 114.4 211 37.0
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.2e-23 114.4 166 42.2
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 1.2e-23 114.4 165 41.2
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 1.2e-23 114.4 202 36.6
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 1.6e-23 114.0 214 37.4
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 1.6e-23 114.0 214 37.4
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 3.6e-23 112.8 180 38.9
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 3.6e-23 112.8 135 48.1
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 4.7e-23 112.5 170 38.8
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 6.1e-23 112.1 135 48.9
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 8.0e-23 111.7 177 41.2
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 8.0e-23 111.7 236 33.5
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 8.0e-23 111.7 160 42.5
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 1.0e-22 111.3 167 39.5
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.0e-22 111.3 161 42.2
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 1.0e-22 111.3 163 40.5
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 3.0e-22 109.8 171 39.2
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 3.0e-22 109.8 162 41.4
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 4.0e-22 109.4 158 42.4
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 5.2e-22 109.0 171 39.2
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 6.8e-22 108.6 133 48.9
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 1.2e-21 107.8 161 42.2
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 2.0e-21 107.1 128 44.5
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 2.0e-21 107.1 169 42.0
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 5.7e-21 105.5 172 39.0
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 1.3e-20 104.4 189 36.5
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.2e-20 103.6 140 43.6
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 3.7e-20 102.8 203 36.5
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 1.1e-19 101.3 212 37.3
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 1.4e-19 100.9 172 37.8
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 2.4e-19 100.1 179 35.8
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 2.4e-19 100.1 160 38.1
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 3.1e-19 99.8 185 36.2
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 1.0e-17 94.7 117 41.9
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 1.0e-17 94.7 117 41.9
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 1.0e-17 94.7 127 41.7
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 1.3e-17 94.4 144 39.6
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 3.2e-16 89.7 170 35.9
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 3.6e-15 86.3 166 33.7
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 8.0e-15 85.1 107 43.9
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 5.7e-13 79.0 115 41.7
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.9e-08 63.9 154 35.1
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 3.6e-07 59.7 119 37.0
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 6.1e-07 58.9 71 47.9
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 4.0e-06 56.2 67 44.8


User provided reference genes

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