Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0124900 Oryza sativa ssp. japonica HOM05D007651 ORTHO05D001192 6.2e-98 360.9 169 100.0
Os01g0125000 Oryza sativa ssp. japonica HOM05D000390 ORTHO05D001192 1.5e-27 127.1 177 44.6
RcHm_v2.0_Chr6g0252861 Rosa chinensis HOM05D000390 ORTHO05D001192 1.6e-16 90.5 108 38.0
DCAR_025881 Daucus carota HOM05D000390 ORTHO05D001192 4.6e-16 89.0 149 30.9
COL.COLO4_10042 Corchorus olitorius HOM05D007651 ORTHO05D000898 3.3e-14 82.8 138 30.4
Prupe.8G145500 Prunus persica HOM05D000390 ORTHO05D001192 1.2e-13 80.9 160 27.5
TPR.G18791 Trifolium pratense HOM05D000390 ORTHO05D001192 1.2e-13 80.9 174 28.2
PSO478G2442 Papaver somniferum HOM05D000390 ORTHO05D001192 1.6e-13 80.5 113 35.4
Nitab4.5_0000625g0020 Nicotiana tabacum HOM05D007651 ORTHO05D001192 2.8e-13 79.7 158 32.9
Lsat_1_v5_gn_2_81280 Lactuca sativa HOM05D000390 ORTHO05D001192 3.6e-13 79.3 170 28.2
Psat2g042640 Pisum sativum HOM05D000390 ORTHO05D001192 3.6e-13 79.3 176 30.1
Ciclev10013760m.g Citrus clementina HOM05D007651 ORTHO05D001192 4.7e-13 79.0 149 34.2
PSO017G0644 Papaver somniferum HOM05D000390 ORTHO05D001192 8.0e-13 78.2 113 35.4
Zm00001eb334930 Zea mays HOM05D000390 ORTHO05D001192 1.1e-12 77.8 140 33.6
FvH4_2g03850 Fragaria vesca HOM05D000390 ORTHO05D001192 1.8e-12 77.0 101 36.6
Medtr5g061290 Medicago truncatula HOM05D000390 ORTHO05D001192 1.8e-12 77.0 116 32.8
Medtr5g076660 Medicago truncatula HOM05D000390 ORTHO05D001192 1.8e-12 77.0 168 31.0
TPR.G5333 Trifolium pratense HOM05D000390 ORTHO05D001192 1.8e-12 77.0 163 30.1
Nitab4.5_0000901g0120 Nicotiana tabacum HOM05D007651 ORTHO05D001192 2.3e-12 76.6 156 29.5
Os01g0121950 Oryza sativa ssp. japonica HOM05D000390 ORTHO05D001192 2.3e-12 76.6 167 31.1
Psat2g042760 Pisum sativum HOM05D000390 ORTHO05D001192 2.3e-12 76.6 120 35.0
Medtr5g067400 Medicago truncatula HOM05D000390 ORTHO05D001192 3.1e-12 76.3 116 32.8
TPR.G5316 Trifolium pratense HOM05D000218 ORTHO05D001192 3.1e-12 76.3 165 29.1
Medtr4g058025 Medicago truncatula HOM05D007651 ORTHO05D001192 4.0e-12 75.9 119 33.6
Ciclev10011294m.g Citrus clementina HOM05D007651 ORTHO05D001192 5.2e-12 75.5 146 28.1
Medtr5g076810 Medicago truncatula HOM05D000218 ORTHO05D001192 5.2e-12 75.5 116 31.9
RcHm_v2.0_Chr3g0493571 Rosa chinensis HOM05D000390 ORTHO05D001192 5.2e-12 75.5 101 37.6
Medtr2g038420 Medicago truncatula HOM05D000218 ORTHO05D001192 6.8e-12 75.1 136 32.4
MD09G1260200 Malus domestica HOM05D000390 ORTHO05D001192 8.9e-12 74.7 102 36.3
Medtr1g046640 Medicago truncatula HOM05D000218 ORTHO05D001192 8.9e-12 74.7 124 36.3
MSTRG.3530 Avicennia marina HOM05D007651 ORTHO05D001192 1.2e-11 74.3 110 32.7
CSS0029078 Camellia sinensis var. sinensis HOM05D000390 ORTHO05D001192 1.2e-11 74.3 139 28.8
Medtr5g076820 Medicago truncatula HOM05D000390 ORTHO05D001192 1.2e-11 74.3 115 32.2
Os01g0125500 Oryza sativa ssp. japonica HOM05D045119 ORTHO05D001192 1.2e-11 74.3 159 31.4
Prupe.8G145400 Prunus persica HOM05D000390 ORTHO05D001192 1.2e-11 74.3 163 31.3
FAN23G1779 Fragaria x ananassa HOM05D000390 ORTHO05D001192 1.5e-11 73.9 150 34.0
FAN26G2380 Fragaria x ananassa HOM05D000390 ORTHO05D001192 1.5e-11 73.9 150 34.0
MD10G1106400 Malus domestica HOM05D000390 ORTHO05D001192 1.5e-11 73.9 147 27.2
Solyc03g034455.1 Solanum lycopersicum HOM05D000390 ORTHO05D001192 1.5e-11 73.9 164 26.8
Actinidia15920 Actinidia chinensis HOM05D000390 ORTHO05D001192 2.0e-11 73.6 113 33.6
DCAR_025880 Daucus carota HOM05D000390 ORTHO05D001192 2.0e-11 73.6 151 27.8
GSVIVG01030888001 Vitis vinifera HOM05D007651 ORTHO05D001192 2.0e-11 73.6 113 32.7
CiPaw.04G045400 Carya illinoinensis HOM05D007651 ORTHO05D001192 2.6e-11 73.2 112 34.8
CiPaw.15G020600 Carya illinoinensis HOM05D007651 ORTHO05D001192 2.6e-11 73.2 112 34.8
Medtr7g024290 Medicago truncatula HOM05D000390 ORTHO05D001192 2.6e-11 73.2 138 30.4
Prupe.3G152000 Prunus persica HOM05D000390 ORTHO05D001192 2.6e-11 73.2 98 40.8
Medtr5g077020 Medicago truncatula HOM05D007651 ORTHO05D001192 4.4e-11 72.4 144 31.2
SGA_v2.0_scaffold329G48863 Striga asiatica HOM05D000390 ORTHO05D001192 5.8e-11 72.0 158 26.6
ECA236G3377 Erigeron canadensis HOM05D007651 ORTHO05D001192 7.5e-11 71.6 165 29.7
FvH4_1g29100 Fragaria vesca HOM05D000390 ORTHO05D001192 7.5e-11 71.6 150 32.7
Medtr1g046650 Medicago truncatula HOM05D000218 ORTHO05D001192 7.5e-11 71.6 116 33.6
RcHm_v2.0_Chr6g0252871 Rosa chinensis HOM05D000390 ORTHO05D001192 7.5e-11 71.6 93 36.6
Os06g0311300 Oryza sativa ssp. japonica HOM05D000390 ORTHO05D001192 9.8e-11 71.2 166 27.1
TPR.G18878 Trifolium pratense HOM05D000390 ORTHO05D001192 9.8e-11 71.2 151 29.8
QL02p048445 Quercus lobata HOM05D007651 ORTHO05D001192 1.3e-10 70.9 132 34.1
Solyc03g034450.4 Solanum lycopersicum HOM05D000390 ORTHO05D001192 1.3e-10 70.9 165 27.9
Solyc03g043600.3 Solanum lycopersicum HOM05D007651 ORTHO05D000898 1.3e-10 70.9 145 30.3
Sopen03g007330 Solanum pennellii HOM05D000390 ORTHO05D001192 1.3e-10 70.9 165 28.5
Sopen03g007480 Solanum pennellii HOM05D007651 ORTHO05D000898 1.3e-10 70.9 145 31.0
Medtr5g076370 Medicago truncatula HOM05D000218 ORTHO05D001192 1.7e-10 70.5 118 32.2
Solyc00g500096.1 Solanum lycopersicum HOM05D000390 ORTHO05D001192 1.7e-10 70.5 159 27.7
RcHm_v2.0_Chr2g0111691 Rosa chinensis HOM05D000390 ORTHO05D001192 2.2e-10 70.1 152 30.9
PGSC0003DMG400016690 Solanum tuberosum HOM05D007651 ORTHO05D000898 2.2e-10 70.1 145 30.3
Oeu047424.1 Olea europaea HOM05D000390 ORTHO05D001192 2.9e-10 69.7 140 28.6
CAN.G11.14 Capsicum annuum HOM05D007651 ORTHO05D001192 4.9e-10 68.9 150 32.0
PGSC0003DMG401016693 Solanum tuberosum HOM05D000390 ORTHO05D001192 8.3e-10 68.2 163 23.9
CDE06G1418 Ceratophyllum demersum HOM05D000390 ORTHO05D001192 1.1e-09 67.8 145 27.6
FAN15G2481 Fragaria x ananassa HOM05D007651 ORTHO05D001192 1.1e-09 67.8 101 34.7
Peaxi162Scf00104g01921 Petunia axillaris HOM05D007651 ORTHO05D000898 1.1e-09 67.8 146 28.1
RcHm_v2.0_Chr6g0253841 Rosa chinensis HOM05D000390 ORTHO05D001192 1.1e-09 67.8 99 39.4
CDE07G1958 Ceratophyllum demersum HOM05D000390 ORTHO05D001192 1.4e-09 67.4 108 33.3
Lj6g0005782 Lotus japonicus HOM05D000390 ORTHO05D001192 1.4e-09 67.4 121 33.9
COL.COLO4_27120 Corchorus olitorius HOM05D000390 ORTHO05D001192 1.9e-09 67.0 127 30.7
TPR.G5303 Trifolium pratense HOM05D000390 ORTHO05D001192 3.2e-09 66.2 128 31.2
Psat2g042720 Pisum sativum HOM05D000390 ORTHO05D001192 4.1e-09 65.9 169 27.2
AT5G37870 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 5.4e-09 65.5 149 26.2
PGSC0003DMG402016693 Solanum tuberosum HOM05D007651 ORTHO05D001192 5.4e-09 65.5 163 23.3
FvH4_2g04470 Fragaria vesca HOM05D000390 ORTHO05D001192 7.0e-09 65.1 104 35.6
Rhsim08G0085400 Rhododendron simsii HOM05D000390 ORTHO05D001192 7.0e-09 65.1 149 27.5
FAN19G0598 Fragaria x ananassa HOM05D000390 ORTHO05D001192 9.2e-09 64.7 146 27.4
Medtr2g038430 Medicago truncatula HOM05D000390 ORTHO05D001192 1.2e-08 64.3 173 26.0
MD09G1260400 Malus domestica HOM05D007651 ORTHO05D001192 1.6e-08 63.9 139 28.1
Rhsim08G0085300 Rhododendron simsii HOM05D000390 ORTHO05D001192 2.0e-08 63.5 144 27.8
Psat0s1696g0040 Pisum sativum HOM05D007651 ORTHO05D001192 2.7e-08 63.2 168 26.8
Atru.chr1.1773 Acer truncatum HOM05D000390 ORTHO05D001192 3.5e-08 62.8 98 34.7
Thhalv10028143m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 3.5e-08 62.8 150 28.7
Lj6g0007148 Lotus japonicus HOM05D007651 ORTHO05D001192 4.6e-08 62.4 118 33.9
Psat2g043040 Pisum sativum HOM05D000390 ORTHO05D001192 4.6e-08 62.4 108 33.3
Solyc00g500091.1 Solanum lycopersicum HOM05D000390 ORTHO05D001192 4.6e-08 62.4 105 27.6
FvH4_2g04471 Fragaria vesca HOM05D000390 ORTHO05D001192 7.8e-08 61.6 104 32.7
FAN24G0796 Fragaria x ananassa HOM05D000390 ORTHO05D001192 7.8e-08 61.6 104 32.7
Medtr5g076540 Medicago truncatula HOM05D000390 ORTHO05D001192 7.8e-08 61.6 116 30.2
CANSAT78G1481 Cannabis sativa HOM05D000390 ORTHO05D001192 1.0e-07 61.2 103 31.1
Sed0004721 Sechium edule HOM05D000390 ORTHO05D001192 1.0e-07 61.2 118 34.7
Ca_18302_v3 Cicer arietinum L. HOM05D000390 ORTHO05D001192 1.3e-07 60.8 154 28.6
DCAR_015249 Daucus carota HOM05D000390 ORTHO05D001192 2.3e-07 60.1 136 28.7
Oeu000897.1 Olea europaea HOM05D000390 ORTHO05D001192 5.0e-07 58.9 155 25.8
TPR.G5330 Trifolium pratense HOM05D000390 ORTHO05D001192 5.0e-07 58.9 126 27.8
vmacro18054 Vaccinium macrocarpon HOM05D000390 ORTHO05D001192 6.6e-07 58.5 101 31.7
Sed0012578 Sechium edule HOM05D000390 ORTHO05D001192 8.6e-07 58.2 54 50.0
Cfa005787 Carpinus fangiana HOM05D000390 ORTHO05D001192 1.5e-06 57.4 109 32.1
ClCG05G010810 Citrullus lanatus HOM05D000390 ORTHO05D001192 1.9e-06 57.0 97 36.1
Carub.0002s1264 Capsella rubella HOM05D000390 ORTHO05D001192 9.5e-06 54.7 147 25.9


User provided reference genes

Program Settings