Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1514.2 774 100.0
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 0.0e+00 1239.2 769 83.0
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 0.0e+00 1232.2 774 81.1
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 0.0e+00 1226.5 775 80.8
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1226.1 776 81.4
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1218.0 790 80.3
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1216.1 787 80.8
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1211.4 787 80.3
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1209.1 789 80.0
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1208.0 790 79.2
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1207.2 782 79.9
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 0.0e+00 1204.9 774 80.4
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 0.0e+00 1203.7 774 80.1
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 0.0e+00 1198.7 774 80.1
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1191.0 730 83.2
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1189.9 742 81.8
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1187.6 768 79.2
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1182.9 784 79.1
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1182.2 760 79.3
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1176.8 793 77.3
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1170.6 740 81.5
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1169.1 793 77.0
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1168.3 789 76.9
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 0.0e+00 1166.0 777 77.7
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1165.6 831 74.5
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1164.8 741 81.0
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1162.9 739 80.1
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1161.4 728 81.3
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1160.6 770 78.3
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1159.4 761 78.2
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1156.0 760 77.4
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1152.9 780 77.6
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1152.5 795 76.1
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 0.0e+00 1152.1 719 82.6
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 0.0e+00 1151.0 734 79.7
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 0.0e+00 1147.5 771 76.3
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1146.0 729 80.8
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1142.9 780 75.4
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1140.9 750 78.8
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1140.2 776 76.0
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1139.8 698 82.2
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1139.8 730 80.0
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1138.6 786 74.9
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1138.3 729 80.1
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1137.5 784 74.6
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 0.0e+00 1132.9 704 82.1
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 0.0e+00 1131.7 716 81.1
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1118.6 749 77.2
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 0.0e+00 1118.2 774 76.4
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 0.0e+00 1114.4 772 75.3
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 0.0e+00 1112.1 731 77.0
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 0.0e+00 1110.5 783 73.7
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 0.0e+00 1104.7 774 73.3
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 0.0e+00 1085.9 729 75.9
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1080.1 766 72.6
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1080.1 766 72.6
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 0.0e+00 1079.7 776 71.6
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 0.0e+00 1078.5 796 71.7
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1078.5 730 75.9
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 5.3e-312 1074.7 728 75.7
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 5.3e-312 1073.9 753 73.7
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 1.4e-310 1069.3 786 71.6
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 1.8e-310 1068.9 767 71.8
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 4.0e-310 1067.8 650 83.5
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 6.4e-308 1060.4 760 72.4
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 1.4e-307 1059.3 819 69.0
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 1.9e-307 1058.9 721 76.0
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 2.4e-307 1058.5 748 72.7
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 4.1e-307 1057.7 779 70.9
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 7.8e-306 1053.5 730 74.0
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 1.3e-305 1052.7 740 73.5
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 1.1e-304 1049.7 755 72.5
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 1.9e-304 1048.9 739 74.6
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 1.6e-303 1045.8 762 71.3
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 2.8e-303 1045.0 778 71.6
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 1.4e-302 1042.7 790 70.1
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 4.0e-302 1041.2 734 73.2
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 1.2e-301 1039.6 763 71.2
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 1.5e-301 1039.3 730 73.2
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 2.0e-301 1038.9 738 73.0
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 2.0e-301 1038.9 726 74.2
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 2.9e-300 1035.0 729 72.6
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 4.9e-300 1034.2 781 70.3
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 5.4e-299 1030.8 676 78.7
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 7.1e-299 1030.4 747 71.2
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 7.1e-299 1030.4 768 69.3
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 1.2e-298 1029.6 747 71.1
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 3.5e-298 1028.1 724 72.9
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 3.5e-298 1028.1 724 72.8
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 1.3e-297 1026.2 736 72.0
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 1.3e-297 1026.2 759 72.2
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 1.5e-296 1022.7 714 73.7
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 1.6e-295 1019.2 773 69.1
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 3.1e-294 1015.0 769 68.1
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 4.0e-294 1014.6 737 70.8
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.5e-288 995.3 702 73.5
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 2.0e-248 862.8 617 74.7
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 1.6e-242 843.2 571 74.1
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.1e-242 842.8 571 74.1
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 3.0e-241 839.0 724 59.7
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 7.7e-237 824.3 750 57.9
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 3.7e-231 805.4 711 59.8
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.8e-230 803.1 732 57.4
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 9.4e-227 790.8 718 59.1
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.2e-224 783.9 541 68.9
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 4.9e-215 751.9 531 67.8
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 4.3e-211 738.8 529 67.3
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.7e-196 690.3 547 62.7
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.5e-192 677.2 414 80.0
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 1.6e-178 630.6 403 79.4
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.4e-169 600.9 414 68.8
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 7.4e-155 552.0 343 81.3
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 3.0e-132 476.9 269 84.4
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 3.0e-116 423.7 607 47.8
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 1.3e-103 381.7 693 36.4
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 4.0e-100 370.2 491 43.2
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 1.6e-96 358.2 278 68.3
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 3.9e-95 353.6 265 64.2
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 4.7e-85 320.1 280 64.3
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 7.8e-72 276.2 351 48.7
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 1.4e-65 255.4 690 30.3
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 7.1e-41 173.3 99 79.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 7.4e-38 163.3 83 90.4
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 3.9e-31 141.0 130 58.5
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 5.1e-31 140.6 100 69.0
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 3.9e-23 114.4 54 92.6
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 2.0e-22 112.1 157 44.6
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 3.3e-22 111.3 152 44.7
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 1.9e-17 95.5 103 50.5
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 2.4e-12 78.6 211 32.7
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 5.9e-11 73.9 41 82.9
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 5.0e-10 70.9 74 55.4
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 7.2e-09 67.0 369 24.7
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 1.2e-08 66.2 79 44.3
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.6e-08 64.7 80 47.5
Prupe.7G070400 Prunus persica HOM05D008447 ORTHO05D010638 3.0e-07 61.6 269 26.0
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 2.6e-06 58.5 317 21.8
PGR004G0530 Punica granatum HOM05D008447 ORTHO05D010638 4.4e-06 57.8 299 23.7
PSO384G3680 Papaver somniferum HOM05D008447 ORTHO05D010638 7.5e-06 57.0 257 24.9
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 7.5e-06 57.0 85 40.0
Aqoxy1G00302 Aquilegia oxysepala HOM05D008447 ORTHO05D010638 9.7e-06 56.6 256 25.4


User provided reference genes

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