Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu058090.2 Olea europaea HOM05D004514 ORTHO05D005147 9.6e-124 446.8 222 100.0
GSVIVG01008554001 Vitis vinifera HOM05D004514 ORTHO05D005147 9.8e-60 234.2 189 63.5
MSTRG.11268 Avicennia marina HOM05D004514 ORTHO05D005147 3.7e-59 232.3 189 65.6
Migut.I00550 Erythranthe guttata HOM05D004514 ORTHO05D005147 3.7e-59 232.3 188 66.0
Hma1.2p1_0014F.1_g009230 Hydrangea macrophylla HOM05D004514 ORTHO05D005147 6.3e-59 231.5 189 64.6
Lalb_Chr12g0202281 Lupinus albus HOM05D004514 ORTHO05D005147 6.3e-59 231.5 219 57.5
TAR371G0381 Trochodendron aralioides HOM05D004514 ORTHO05D005147 1.4e-58 230.3 189 61.9
Rhsim08G0191700 Rhododendron simsii HOM05D004514 ORTHO05D005147 1.8e-58 229.9 189 65.1
SGA_v2.0_scaffold40G15556 Striga asiatica HOM05D004514 ORTHO05D005147 1.8e-58 229.9 205 62.9
Ciclev10032114m.g Citrus clementina HOM05D004514 ORTHO05D005147 4.1e-58 228.8 189 63.0
MD06G1138700 Malus domestica HOM05D004514 ORTHO05D005147 4.1e-58 228.8 219 57.1
MD14G1154700 Malus domestica HOM05D004514 ORTHO05D005147 4.1e-58 228.8 219 56.6
Dinv23167 Davidia involucrata HOM05D004514 ORTHO05D005147 9.2e-58 227.6 189 65.1
SGA_v2.0_scaffold383G50415 Striga asiatica HOM05D004514 ORTHO05D005147 9.2e-58 227.6 189 64.6
Medtr8g096740 Medicago truncatula HOM05D004514 ORTHO05D005147 1.6e-57 226.9 218 56.4
CSS0037403 Camellia sinensis var. sinensis HOM05D004514 ORTHO05D005147 2.0e-57 226.5 189 62.4
Psat7g036440 Pisum sativum HOM05D004514 ORTHO05D005147 2.0e-57 226.5 218 56.4
HanXRQChr09g0273381 Helianthus annuus HOM05D004514 ORTHO05D005147 2.7e-57 226.1 189 65.1
Cc01_g02400 Coffea canephora HOM05D004514 ORTHO05D005147 4.5e-57 225.3 189 64.0
arahy.Tifrunner.gnm1.ann1.PL1S0I Arachis hypogaea HOM05D004514 ORTHO05D005147 5.9e-57 224.9 188 62.8
Sc04g0000510 Simmondsia chinensis HOM05D004514 ORTHO05D005147 5.9e-57 224.9 189 61.4
arahy.Tifrunner.gnm1.ann1.V9PUN9 Arachis hypogaea HOM05D004514 ORTHO05D005147 7.7e-57 224.6 188 62.8
Phvul.002G285900 Phaseolus vulgaris HOM05D004514 ORTHO05D005147 1.0e-56 224.2 218 56.4
COL.COLO4_06539 Corchorus olitorius HOM05D004514 ORTHO05D005147 1.7e-56 223.4 189 62.4
Thecc.03G131800 Theobroma cacao HOM05D004514 ORTHO05D005147 1.7e-56 223.4 189 60.8
Actinidia25561 Actinidia chinensis HOM05D004514 ORTHO05D005147 2.3e-56 223.0 188 63.3
Atru.chr5.373 Acer truncatum HOM05D004514 ORTHO05D005147 2.9e-56 222.6 189 61.4
QL10p002475 Quercus lobata HOM05D004514 ORTHO05D005147 2.9e-56 222.6 190 62.6
FAN04G1407 Fragaria x ananassa HOM05D004514 ORTHO05D005147 3.8e-56 222.2 189 61.4
Glyma.05G204000 Glycine max HOM05D004514 ORTHO05D005147 3.8e-56 222.2 218 56.0
RcHm_v2.0_Chr7g0189801 Rosa chinensis HOM05D004514 ORTHO05D005147 3.8e-56 222.2 189 61.4
Potri.015G099000 Populus trichocarpa HOM05D004514 ORTHO05D005147 6.6e-56 221.5 189 60.8
TPR.G12790 Trifolium pratense HOM05D004514 ORTHO05D005147 6.6e-56 221.5 188 62.8
Lj4g0022972 Lotus japonicus HOM05D004514 ORTHO05D005147 8.6e-56 221.1 186 63.4
Manes.06G121000 Manihot esculenta HOM05D004514 ORTHO05D005147 8.6e-56 221.1 188 60.6
TWI23G1308 Tripterygium wilfordii HOM05D004514 ORTHO05D005147 8.6e-56 221.1 189 60.8
Haze_07164 Corylus avellana HOM05D004514 ORTHO05D005147 1.1e-55 220.7 188 61.2
Manes.14G049500 Manihot esculenta HOM05D004514 ORTHO05D005147 1.1e-55 220.7 188 62.2
Aqoxy5G03306 Aquilegia oxysepala HOM05D004514 ORTHO05D005147 1.5e-55 220.3 189 60.8
Gorai.008G207100 Gossypium raimondii HOM05D004514 ORTHO05D005147 1.5e-55 220.3 219 54.8
Prupe.5G148900 Prunus persica HOM05D004514 ORTHO05D005147 1.5e-55 220.3 189 61.4
FvH4_5g08600 Fragaria vesca HOM05D004514 ORTHO05D005147 2.5e-55 219.5 189 60.8
FAN13G0104 Fragaria x ananassa HOM05D004514 ORTHO05D005147 2.5e-55 219.5 189 60.8
FAN18G1834 Fragaria x ananassa HOM05D004514 ORTHO05D005147 2.5e-55 219.5 189 60.8
Sabra15G0119900 Salix brachista HOM05D004514 ORTHO05D005147 2.5e-55 219.5 189 60.8
CiPaw.12G044700 Carya illinoinensis HOM05D004514 ORTHO05D005147 3.3e-55 219.2 189 60.3
Lalb_Chr07g0183531 Lupinus albus HOM05D004514 ORTHO05D005147 3.3e-55 219.2 189 61.9
Sabra12G0074100 Salix brachista HOM05D004514 ORTHO05D005147 3.3e-55 219.2 189 59.8
THA.LOC104806080 Tarenaya hassleriana HOM05D004514 ORTHO05D005147 3.3e-55 219.2 189 61.4
Sopen06g028370 Solanum pennellii HOM05D004514 ORTHO05D005147 5.6e-55 218.4 217 53.9
Ah.11g044000 Amaranthus hybridus HOM05D004514 ORTHO05D005147 9.5e-55 217.6 189 60.8
Duzib084G0819 Durio zibethinus HOM05D004514 ORTHO05D005147 9.5e-55 217.6 189 60.3
Gohir.D12G192600 Gossypium hirsutum HOM05D004514 ORTHO05D005147 9.5e-55 217.6 219 53.9
CANSAT80G0288 Cannabis sativa HOM05D004514 ORTHO05D005147 1.6e-54 216.9 189 62.4
CANSAT80G1302 Cannabis sativa HOM05D004514 ORTHO05D005147 1.6e-54 216.9 189 62.4
Lj4g0011293 Lotus japonicus HOM05D004514 ORTHO05D005147 1.6e-54 216.9 218 55.0
VMungo0251G2558 Vigna mungo HOM05D004514 ORTHO05D005147 1.6e-54 216.9 187 61.5
Lsat_1_v5_gn_4_81560 Lactuca sativa HOM05D004514 ORTHO05D005147 2.1e-54 216.5 189 61.4
Cpa.g.sc1141.1 Carica papaya HOM05D004514 ORTHO05D005147 2.8e-54 216.1 189 59.8
Potri.012G100800 Populus trichocarpa HOM05D004514 ORTHO05D005147 2.8e-54 216.1 188 59.0
CAN.G65.55 Capsicum annuum HOM05D004514 ORTHO05D005147 3.6e-54 215.7 218 53.2
A01p16230 Brassica napus HOM05D004514 ORTHO05D005147 4.7e-54 215.3 189 60.8
C01p20220 Brassica napus HOM05D004514 ORTHO05D005147 4.7e-54 215.3 189 60.8
BolC1t01951H Brassica oleracea HOM05D004514 ORTHO05D005147 4.7e-54 215.3 189 60.8
BraA01t01559Z Brassica rapa HOM05D004514 ORTHO05D005147 4.7e-54 215.3 189 60.8
Carub.0008s1067 Capsella rubella HOM05D004514 ORTHO05D005147 4.7e-54 215.3 189 60.3
Carub.0007s1612 Capsella rubella HOM05D004514 ORTHO05D005147 6.1e-54 214.9 219 54.8
Gorai.003G118500 Gossypium raimondii HOM05D004514 ORTHO05D005147 6.1e-54 214.9 189 59.8
Nitab4.5_0003367g0080 Nicotiana tabacum HOM05D004514 ORTHO05D005147 6.1e-54 214.9 188 60.6
EL10Ac2g03710 Beta vulgaris HOM05D004514 ORTHO05D005147 1.0e-53 214.2 189 59.3
AUR62038747 Chenopodium quinoa HOM05D004514 ORTHO05D005147 1.0e-53 214.2 189 59.3
PGSC0003DMG400026973 Solanum tuberosum HOM05D004514 ORTHO05D005147 1.0e-53 214.2 187 60.4
BcaB03g12450 Brassica carinata HOM05D004514 ORTHO05D005147 1.4e-53 213.8 189 60.8
Sp7g22920 Schrenkiella parvula HOM05D004514 ORTHO05D005147 1.4e-53 213.8 189 60.3
AL8G24840 Arabidopsis lyrata HOM05D004514 ORTHO05D005147 3.0e-53 212.6 189 59.8
Gohir.A12G190300 Gossypium hirsutum HOM05D004514 ORTHO05D005147 4.0e-53 212.2 219 53.4
Aa31LG7G10850 Aethionema arabicum HOM05D004514 ORTHO05D005147 5.2e-53 211.8 189 59.8
CARHR232340 Cardamine hirsuta HOM05D004514 ORTHO05D005147 5.2e-53 211.8 189 59.3
Sed0020700 Sechium edule HOM05D004514 ORTHO05D005147 6.8e-53 211.5 219 53.4
AT4G24940 Arabidopsis thaliana HOM05D004514 ORTHO05D005147 1.2e-52 210.7 219 53.4
Thhalv10025730m.g Eutrema salsugineum HOM05D004514 ORTHO05D005147 1.2e-52 210.7 189 58.7
Gohir.A03G054600 Gossypium hirsutum HOM05D004514 ORTHO05D005147 1.2e-52 210.7 189 58.2
CDE06G0772 Ceratophyllum demersum HOM05D004514 ORTHO05D005147 2.0e-52 209.9 189 58.2
Gohir.D03G112233 Gossypium hirsutum HOM05D004514 ORTHO05D005147 2.0e-52 209.9 193 58.5
Lj5C94G12 Lonicera japonica HOM05D004514 ORTHO05D005147 2.6e-52 209.5 189 60.8
AT5G50580 Arabidopsis thaliana HOM05D004514 ORTHO05D005147 4.4e-52 208.8 189 58.7
AT5G50680 Arabidopsis thaliana HOM05D004514 ORTHO05D005147 4.4e-52 208.8 189 58.7
PGSC0003DMG400015268 Solanum tuberosum HOM05D004514 ORTHO05D005147 4.4e-52 208.8 218 53.7
Nitab4.5_0010179g0030 Nicotiana tabacum HOM05D004514 ORTHO05D005147 5.7e-52 208.4 188 59.0
CsaV3_1G009770 Cucumis sativus L. HOM05D004514 ORTHO05D005147 7.5e-52 208.0 189 57.7
Hund02453 Selenicereus undatus HOM05D004514 ORTHO05D005147 7.5e-52 208.0 189 57.7
AL7G28260 Arabidopsis lyrata HOM05D004514 ORTHO05D005147 9.8e-52 207.6 189 57.7
CARHR257690 Cardamine hirsuta HOM05D004514 ORTHO05D005147 1.7e-51 206.8 189 58.2
ClCG03G003890 Citrullus lanatus HOM05D004514 ORTHO05D005147 2.9e-51 206.1 189 57.7
MBI11_g22694_MAGBIO Magnolia biondii HOM05D004514 ORTHO05D005147 3.7e-51 205.7 189 58.2
MELO3C002371.2 Cucumis melo HOM05D004514 ORTHO05D005147 4.9e-51 205.3 189 56.6
Sp6g12760 Schrenkiella parvula HOM05D004514 ORTHO05D005147 4.9e-51 205.3 189 58.2
CAN.G861.4 Capsicum annuum HOM05D004514 ORTHO05D005147 6.4e-51 204.9 186 60.2
Solyc03g019730.4 Solanum lycopersicum HOM05D004514 ORTHO05D005147 8.3e-51 204.5 218 52.8
Sopen03g029890 Solanum pennellii HOM05D004514 ORTHO05D005147 8.3e-51 204.5 218 52.8
Eucgr.K02707 Eucalyptus grandis HOM05D004514 ORTHO05D005147 1.1e-50 204.1 189 58.2
Peaxi162Scf00763g00222 Petunia axillaris HOM05D004514 ORTHO05D005147 1.4e-50 203.8 225 50.2
PGR044G2046 Punica granatum HOM05D004514 ORTHO05D005147 3.2e-50 202.6 190 56.8
vmacro19126 Vaccinium macrocarpon HOM05D004514 ORTHO05D005147 3.2e-50 202.6 181 61.9
PGR119G0827 Punica granatum HOM05D004514 ORTHO05D005147 4.1e-50 202.2 189 56.1
DCAR_016379 Daucus carota HOM05D004514 ORTHO05D005147 5.4e-50 201.8 189 58.7
Sed0016514 Sechium edule HOM05D004514 ORTHO05D005147 7.0e-50 201.4 189 55.0
PSO017G0632 Papaver somniferum HOM05D004514 ORTHO05D005147 1.6e-49 200.3 189 55.6
PSO478G4665 Papaver somniferum HOM05D004514 ORTHO05D005147 3.5e-49 199.1 189 55.0
Ca_17561_v3 Cicer arietinum L. HOM05D004514 ORTHO05D005147 1.1e-47 194.1 188 54.8
BcaNung07127 Brassica carinata HOM05D004514 ORTHO05D005147 3.3e-47 192.6 189 56.6
Nitab4.5_0000477g0040 Nicotiana tabacum HOM05D004514 ORTHO05D005147 1.6e-46 190.3 187 56.1
Os11g0497000 Oryza sativa ssp. japonica HOM05D004514 ORTHO05D005147 1.4e-45 187.2 185 53.0
FAN08G2687 Fragaria x ananassa HOM05D004514 ORTHO05D005147 1.2e-44 184.1 202 52.5
SalBow5G3630 Salvia bowleyana HOM05D004514 ORTHO05D005147 2.6e-44 183.0 189 56.6
SalBow5G5364 Salvia bowleyana HOM05D004514 ORTHO05D005147 2.6e-44 183.0 189 56.6
ECA232G1789 Erigeron canadensis HOM05D004514 ORTHO05D005147 3.4e-44 182.6 168 59.5
Zm00001eb169400 Zea mays HOM05D004514 ORTHO05D005147 3.4e-44 182.6 185 53.5
SHI10691 Sapria himalayana HOM05D004514 ORTHO05D005147 1.3e-43 180.6 188 51.1
ATR0561G084 Amborella trichopoda HOM05D004514 ORTHO05D005147 2.9e-43 179.5 189 49.2
arahy.Tifrunner.gnm1.ann1.C7Z4ET Arachis hypogaea HOM05D004514 ORTHO05D005147 2.7e-41 172.9 170 55.3
HPP92_009725 Vanilla planifolia HOM05D004514 ORTHO05D005147 2.3e-40 169.9 190 51.6
Glyma.08G011400 Glycine max HOM05D004514 ORTHO05D005147 3.9e-40 169.1 135 61.5
AUR62020635 Chenopodium quinoa HOM05D004514 ORTHO05D005147 9.5e-39 164.5 162 54.3
Peaxi162Scf00089g00124 Petunia axillaris HOM05D004514 ORTHO05D005147 6.8e-37 158.3 105 74.3
unitig_22.g6250 Utricularia gibba HOM05D004514 ORTHO05D005147 6.8e-37 158.3 145 59.3
Actinidia18339 Actinidia chinensis HOM05D004514 ORTHO05D005147 3.1e-29 132.9 145 52.4
AagrBONN_evm.TU.Sc2ySwM_117.2260 Anthoceros agrestis HOM05D004514 ORTHO05D005147 3.1e-29 132.9 186 40.3
Pp3c21_6470 Physcomitrium patens HOM05D004514 ORTHO05D005147 4.0e-29 132.5 186 40.9
Mapoly0059s0079 Marchantia polymorpha HOM05D004514 ORTHO05D005147 6.8e-29 131.7 185 41.6
Lsat_1_v5_gn_3_53020 Lactuca sativa HOM05D004514 ORTHO05D005147 3.2e-26 122.9 115 59.1
Lsat_1_v5_gn_9_91580 Lactuca sativa HOM05D004514 ORTHO05D005147 3.2e-26 122.9 115 59.1
SMO197G0026 Selaginella moellendorffii HOM05D004514 ORTHO05D005147 1.2e-25 120.9 186 37.1
Atru.chr6.1825 Acer truncatum HOM05D004514 ORTHO05D005147 6.2e-22 108.6 120 52.5
BcaC07g38171 Brassica carinata HOM05D001675 ORTHO05D005147 5.2e-21 105.5 101 53.5
Nitab4.5_0000854g0050 Nicotiana tabacum HOM05D004514 ORTHO05D005147 2.0e-20 103.6 113 52.2
CBR_g45419 Chara braunii HOM05D004514 ORTHO05D005147 2.7e-17 93.2 216 30.1
CAN.G481.2 Capsicum annuum HOM05D004514 ORTHO05D005147 7.8e-17 91.7 105 42.9
Nn1g05105 Nelumbo nucifera HOM05D004514 ORTHO05D005147 3.3e-15 86.3 50 78.0
SEGI_08180 Sequoiadendron giganteum HOM05D004514 ORTHO05D005147 5.3e-13 79.0 100 45.0
TAR629G1553 Trochodendron aralioides HOM05D004514 ORTHO05D005147 3.5e-09 66.2 41 75.6
MCO09G781 Micromonas commoda HOM05D004514 ORTHO05D005147 1.8e-08 63.9 205 26.8
CAN.G951.2 Capsicum annuum HOM05D004514 ORTHO05D005147 2.3e-08 63.5 54 53.7
Nn7g36518 Nelumbo nucifera HOM05D004514 ORTHO05D005147 2.3e-08 63.5 40 70.0
PRCOL_00001407 Prasinoderma coloniale HOM05D004514 ORTHO05D005147 3.9e-08 62.8 205 28.8
Cfa024556 Carpinus fangiana HOM05D004514 ORTHO05D005147 1.9e-07 60.5 197 28.4
CBR_g22049 Chara braunii HOM05D001929 ORTHO05D002426 1.9e-07 60.5 183 27.3
Cre09.g408550 Chlamydomonas reinhardtii HOM05D004514 ORTHO05D005147 3.3e-07 59.7 143 32.2
CBR_g22051 Chara braunii HOM05D001929 ORTHO05D002426 9.6e-07 58.2 180 27.2
Hund10947 Selenicereus undatus HOM05D001929 ORTHO05D002426 1.6e-06 57.4 181 29.8
HPP92_023754 Vanilla planifolia HOM05D001929 ORTHO05D002426 1.6e-06 57.4 186 27.4
C04p20590 Brassica napus HOM05D001929 ORTHO05D002426 2.1e-06 57.0 180 30.6
BolC4t23584H Brassica oleracea HOM05D001929 ORTHO05D002426 2.1e-06 57.0 180 30.6
BcaB02g10297 Brassica carinata HOM05D001929 ORTHO05D002426 2.8e-06 56.6 180 30.6
BcaC02g11093 Brassica carinata HOM05D001929 ORTHO05D002426 2.8e-06 56.6 180 30.6
A05p15330 Brassica napus HOM05D001929 ORTHO05D002426 2.8e-06 56.6 180 30.6
BraA05t20451Z Brassica rapa HOM05D001929 ORTHO05D002426 2.8e-06 56.6 180 30.6
Os03g0294900 Oryza sativa ssp. japonica HOM05D001929 ORTHO05D002426 2.8e-06 56.6 186 28.0
SGA_v2.0_scaffold199G41158 Striga asiatica HOM05D001929 ORTHO05D002426 3.6e-06 56.2 182 30.2
Aa31LG5G6560 Aethionema arabicum HOM05D001929 ORTHO05D002426 4.8e-06 55.8 180 30.6
CARHR123420 Cardamine hirsuta HOM05D001929 ORTHO05D002426 6.2e-06 55.5 180 30.0
AagrBONN_evm.TU.Sc2ySwM_228.2966 Anthoceros agrestis HOM05D001929 ORTHO05D002426 8.1e-06 55.1 199 28.1
Ca_26960_v3 Cicer arietinum L. HOM05D003439 ORTHO05D004062 8.1e-06 55.1 177 27.1
Pp3c3_10180 Physcomitrium patens HOM05D001929 ORTHO05D002426 8.1e-06 55.1 186 26.9


User provided reference genes

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