Similarity Heatmap

Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]
Code Context
                    <label>Source(s)</label>

                    <select class='form form-select' name='ontology_source_group' id='ontology_source_group'>

                        <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D004514',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '160',
		'num_species' => '100'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'gene_selection' => array(
		'parameters' => array(
			(int) 0 => array(
				[maximum depth reached]
			)
		),
		'genes' => array(
			'A01p16230' => 'bna',
			'A03p68150' => 'bna',
			'A04p20440' => 'bna',
			'A09p34540' => 'bna',
			'Aa31LG7G10850' => 'aar',
			'AagrBONN_evm.TU.Sc2ySwM_117.2260' => 'aag',
			'Actinidia18339' => 'ach',
			'Actinidia25561' => 'ach',
			'Ah.11g044000' => 'amhyb',
			'AL7G28260' => 'aly',
			'AL8G24840' => 'aly',
			'Aqoxy5G03306' => 'aox',
			'arahy.Tifrunner.gnm1.ann1.C7Z4ET' => 'arhy',
			'arahy.Tifrunner.gnm1.ann1.PL1S0I' => 'arhy',
			'arahy.Tifrunner.gnm1.ann1.V9PUN9' => 'arhy',
			'AT4G24940' => 'ath',
			'AT5G50580' => 'ath',
			'AT5G50680' => 'ath',
			'ATR0561G084' => 'atr',
			'Atru.chr5.373' => 'acertr',
			'Atru.chr6.1825' => 'acertr',
			'Atru.chr6.1826' => 'acertr',
			'AUR62020635' => 'cqu',
			'AUR62038747' => 'cqu',
			'BcaB03g12450' => 'bca',
			'BcaC04g20593' => 'bca',
			'BcaNung07127' => 'bca',
			'BolC1t01951H' => 'bol',
			'BolC8t48592H' => 'bol',
			'BolC9t57057H' => 'bol',
			'BraA01t01559Z' => 'bra',
			'BraA01t02652Z' => 'bra',
			'C01p20220' => 'bna',
			'C09p41720' => 'bna',
			'CAN.G481.2' => 'can',
			'CAN.G65.55' => 'can',
			'CAN.G861.4' => 'can',
			'CAN.G951.2' => 'can',
			'CAN.G982.17' => 'can',
			'CANSAT80G0288' => 'cansat',
			'CANSAT80G1302' => 'cansat',
			'CARHR232340' => 'chi',
			'CARHR257690' => 'chi',
			'Carub.0007s1612' => 'cru',
			'Carub.0008s1067' => 'cru',
			'Ca_17561_v3' => 'car',
			'CBR_g45419' => 'cbr',
			'Cc01_g02400' => 'ccan',
			'CDE06G0772' => 'cde',
			'Cfa024556' => 'cfa',
			'Ciclev10032114m.g' => 'ccl',
			'CiPaw.12G044700' => 'cil',
			'ClCG03G003890' => 'cla',
			'COL.COLO4_06539' => 'col',
			'Cpa.g.sc1141.1' => 'cpa',
			'Cpa.g.sc807.6' => 'cpa',
			'Cre09.g408550' => 'cre',
			'CsaV3_1G009770' => 'csa',
			'CSS0037403' => 'camsi',
			'DCAR_016379' => 'dca',
			'Dinv23167' => 'din',
			'Duzib084G0819' => 'dzi',
			'ECA232G1789' => 'eca',
			'EL10Ac2g03710' => 'bvu',
			'Eucgr.K02707' => 'egr',
			'FAN04G1407' => 'fan',
			'FAN08G2687' => 'fan',
			'FAN13G0104' => 'fan',
			'FAN18G1834' => 'fan',
			'FvH4_5g08600' => 'fve',
			'Glyma.05G204000' => 'gma',
			'Glyma.08G011400' => 'gma',
			'Gohir.A03G054600' => 'ghi',
			'Gohir.A12G190300' => 'ghi',
			'Gohir.D03G112233' => 'ghi',
			'Gohir.D12G192600' => 'ghi',
			'Gorai.003G118500' => 'gra',
			'Gorai.008G207100' => 'gra',
			'GSVIVG01008554001' => 'vvi',
			'HanXRQChr09g0273381' => 'han',
			'Haze_07164' => 'cav',
			'Hma1.2p1_0014F.1_g009230' => 'hma',
			'HPP92_009725' => 'vpl',
			'Hund02453' => 'sun',
			'Lalb_Chr07g0183531' => 'lal',
			'Lalb_Chr12g0202281' => 'lal',
			'Lj4g0011293' => 'lja',
			'Lj4g0022972' => 'lja',
			'Lj5C94G12' => 'lonja',
			'Lsat_1_v5_gn_3_53020' => 'lsa',
			'Lsat_1_v5_gn_4_81560' => 'lsa',
			'Lsat_1_v5_gn_9_91580' => 'lsa',
			'Manes.06G121000' => 'mes',
			'Manes.14G049500' => 'mes',
			'Mapoly0059s0079' => 'mpo',
			'MBI11_g22694_MAGBIO' => 'mbi',
			'MCO09G781' => 'mco',
			'MD06G1138700' => 'mdo',
			'MD14G1154700' => 'mdo',
			'Medtr8g096740' => 'mtr',
			'MELO3C002371.2' => 'cme',
			'Migut.I00550' => 'egut',
			'MSTRG.11268' => 'ama',
			'Nitab4.5_0000477g0040' => 'nta',
			'Nitab4.5_0000854g0050' => 'nta',
			'Nitab4.5_0003367g0080' => 'nta',
			'Nitab4.5_0010179g0030' => 'nta',
			'Nn1g05105' => 'nnu',
			'Nn7g36518' => 'nnu',
			'Oeu058090.2' => 'oeu',
			'Os11g0497000' => 'osa',
			'Peaxi162Scf00089g00124' => 'pax',
			'Peaxi162Scf00763g00222' => 'pax',
			'PGR044G2046' => 'pgr',
			'PGR119G0827' => 'pgr',
			'PGSC0003DMG400015268' => 'stu',
			'PGSC0003DMG400026973' => 'stu',
			'Phvul.002G285900' => 'pvu',
			'Potri.012G100800' => 'ptr',
			'Potri.015G099000' => 'ptr',
			'Pp3c21_6470' => 'ppa',
			'PRCOL_00001407' => 'pco',
			'Prupe.5G148900' => 'ppe',
			'Psat7g036440' => 'psa',
			'PSO017G0632' => 'pso',
			'PSO478G4665' => 'pso',
			'QL10p002475' => 'qlo',
			'RcHm_v2.0_Chr7g0189801' => 'rch',
			'Rhsim08G0191700' => 'rsi',
			'Sabra12G0074100' => 'sbr',
			'Sabra15G0119900' => 'sbr',
			'SalBow5G3630' => 'sbo',
			'SalBow5G5364' => 'sbo',
			'Sc04g0000510' => 'sci',
			'Sed0016514' => 'sed',
			'Sed0020700' => 'sed',
			'SEGI_08180' => 'sgi',
			'SEGI_14500' => 'sgi',
			'SEGI_25223' => 'sgi',
			'SGA_v2.0_scaffold383G50415' => 'sas',
			'SGA_v2.0_scaffold40G15556' => 'sas',
			'SHI10691' => 'shi',
			'SMO197G0026' => 'smo',
			'Solyc03g019730.4' => 'sly',
			'Sopen03g029890' => 'spe',
			'Sopen06g028370' => 'spe',
			'Sp6g12760' => 'spa',
			'Sp7g22920' => 'spa',
			'TAR371G0381' => 'tar',
			'TAR629G1553' => 'tar',
			'THA.LOC104806080' => 'tha',
			'Thecc.03G131800' => 'tca',
			'Thhalv10025730m.g' => 'esa',
			'TPR.G12790' => 'tpr',
			'TWI23G1308' => 'twi',
			'unitig_22.g6250' => 'ugi',
			'unitig_22.g6251' => 'ugi',
			'vmacro19126' => 'vma',
			'VMungo0251G2558' => 'vmu',
			'Zm00001eb169400' => 'zma'
		)
	),
	'data_type' => 'gene_family',
	'gf_id' => 'HOM05D004514',
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D004514'
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'subfamily_family_types' => array(
		(int) 0 => 'ORTHOFAM'
	),
	'parental_family_types' => array(
		(int) 0 => 'HOMFAM'
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'allowed_data_types' => array(
		'GO' => 'Gene Ontology',
		'INTERPRO' => 'InterPro',
		'GENE_FAMILY' => 'Gene Family'
	)
)
$sidebar_info = array(
	'gf_id' => 'HOM05D004514',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '160',
	'num_species' => '100'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$gene_selection = array(
	'parameters' => array(
		(int) 0 => array(
			'data_type' => 'GENE_FAMILY',
			'data_value' => 'HOM05D004514'
		)
	),
	'genes' => array(
		'A01p16230' => 'bna',
		'A03p68150' => 'bna',
		'A04p20440' => 'bna',
		'A09p34540' => 'bna',
		'Aa31LG7G10850' => 'aar',
		'AagrBONN_evm.TU.Sc2ySwM_117.2260' => 'aag',
		'Actinidia18339' => 'ach',
		'Actinidia25561' => 'ach',
		'Ah.11g044000' => 'amhyb',
		'AL7G28260' => 'aly',
		'AL8G24840' => 'aly',
		'Aqoxy5G03306' => 'aox',
		'arahy.Tifrunner.gnm1.ann1.C7Z4ET' => 'arhy',
		'arahy.Tifrunner.gnm1.ann1.PL1S0I' => 'arhy',
		'arahy.Tifrunner.gnm1.ann1.V9PUN9' => 'arhy',
		'AT4G24940' => 'ath',
		'AT5G50580' => 'ath',
		'AT5G50680' => 'ath',
		'ATR0561G084' => 'atr',
		'Atru.chr5.373' => 'acertr',
		'Atru.chr6.1825' => 'acertr',
		'Atru.chr6.1826' => 'acertr',
		'AUR62020635' => 'cqu',
		'AUR62038747' => 'cqu',
		'BcaB03g12450' => 'bca',
		'BcaC04g20593' => 'bca',
		'BcaNung07127' => 'bca',
		'BolC1t01951H' => 'bol',
		'BolC8t48592H' => 'bol',
		'BolC9t57057H' => 'bol',
		'BraA01t01559Z' => 'bra',
		'BraA01t02652Z' => 'bra',
		'C01p20220' => 'bna',
		'C09p41720' => 'bna',
		'CAN.G481.2' => 'can',
		'CAN.G65.55' => 'can',
		'CAN.G861.4' => 'can',
		'CAN.G951.2' => 'can',
		'CAN.G982.17' => 'can',
		'CANSAT80G0288' => 'cansat',
		'CANSAT80G1302' => 'cansat',
		'CARHR232340' => 'chi',
		'CARHR257690' => 'chi',
		'Carub.0007s1612' => 'cru',
		'Carub.0008s1067' => 'cru',
		'Ca_17561_v3' => 'car',
		'CBR_g45419' => 'cbr',
		'Cc01_g02400' => 'ccan',
		'CDE06G0772' => 'cde',
		'Cfa024556' => 'cfa',
		'Ciclev10032114m.g' => 'ccl',
		'CiPaw.12G044700' => 'cil',
		'ClCG03G003890' => 'cla',
		'COL.COLO4_06539' => 'col',
		'Cpa.g.sc1141.1' => 'cpa',
		'Cpa.g.sc807.6' => 'cpa',
		'Cre09.g408550' => 'cre',
		'CsaV3_1G009770' => 'csa',
		'CSS0037403' => 'camsi',
		'DCAR_016379' => 'dca',
		'Dinv23167' => 'din',
		'Duzib084G0819' => 'dzi',
		'ECA232G1789' => 'eca',
		'EL10Ac2g03710' => 'bvu',
		'Eucgr.K02707' => 'egr',
		'FAN04G1407' => 'fan',
		'FAN08G2687' => 'fan',
		'FAN13G0104' => 'fan',
		'FAN18G1834' => 'fan',
		'FvH4_5g08600' => 'fve',
		'Glyma.05G204000' => 'gma',
		'Glyma.08G011400' => 'gma',
		'Gohir.A03G054600' => 'ghi',
		'Gohir.A12G190300' => 'ghi',
		'Gohir.D03G112233' => 'ghi',
		'Gohir.D12G192600' => 'ghi',
		'Gorai.003G118500' => 'gra',
		'Gorai.008G207100' => 'gra',
		'GSVIVG01008554001' => 'vvi',
		'HanXRQChr09g0273381' => 'han',
		'Haze_07164' => 'cav',
		'Hma1.2p1_0014F.1_g009230' => 'hma',
		'HPP92_009725' => 'vpl',
		'Hund02453' => 'sun',
		'Lalb_Chr07g0183531' => 'lal',
		'Lalb_Chr12g0202281' => 'lal',
		'Lj4g0011293' => 'lja',
		'Lj4g0022972' => 'lja',
		'Lj5C94G12' => 'lonja',
		'Lsat_1_v5_gn_3_53020' => 'lsa',
		'Lsat_1_v5_gn_4_81560' => 'lsa',
		'Lsat_1_v5_gn_9_91580' => 'lsa',
		'Manes.06G121000' => 'mes',
		'Manes.14G049500' => 'mes',
		'Mapoly0059s0079' => 'mpo',
		'MBI11_g22694_MAGBIO' => 'mbi',
		'MCO09G781' => 'mco',
		'MD06G1138700' => 'mdo',
		'MD14G1154700' => 'mdo',
		'Medtr8g096740' => 'mtr',
		'MELO3C002371.2' => 'cme',
		'Migut.I00550' => 'egut',
		'MSTRG.11268' => 'ama',
		'Nitab4.5_0000477g0040' => 'nta',
		'Nitab4.5_0000854g0050' => 'nta',
		'Nitab4.5_0003367g0080' => 'nta',
		'Nitab4.5_0010179g0030' => 'nta',
		'Nn1g05105' => 'nnu',
		'Nn7g36518' => 'nnu',
		'Oeu058090.2' => 'oeu',
		'Os11g0497000' => 'osa',
		'Peaxi162Scf00089g00124' => 'pax',
		'Peaxi162Scf00763g00222' => 'pax',
		'PGR044G2046' => 'pgr',
		'PGR119G0827' => 'pgr',
		'PGSC0003DMG400015268' => 'stu',
		'PGSC0003DMG400026973' => 'stu',
		'Phvul.002G285900' => 'pvu',
		'Potri.012G100800' => 'ptr',
		'Potri.015G099000' => 'ptr',
		'Pp3c21_6470' => 'ppa',
		'PRCOL_00001407' => 'pco',
		'Prupe.5G148900' => 'ppe',
		'Psat7g036440' => 'psa',
		'PSO017G0632' => 'pso',
		'PSO478G4665' => 'pso',
		'QL10p002475' => 'qlo',
		'RcHm_v2.0_Chr7g0189801' => 'rch',
		'Rhsim08G0191700' => 'rsi',
		'Sabra12G0074100' => 'sbr',
		'Sabra15G0119900' => 'sbr',
		'SalBow5G3630' => 'sbo',
		'SalBow5G5364' => 'sbo',
		'Sc04g0000510' => 'sci',
		'Sed0016514' => 'sed',
		'Sed0020700' => 'sed',
		'SEGI_08180' => 'sgi',
		'SEGI_14500' => 'sgi',
		'SEGI_25223' => 'sgi',
		'SGA_v2.0_scaffold383G50415' => 'sas',
		'SGA_v2.0_scaffold40G15556' => 'sas',
		'SHI10691' => 'shi',
		'SMO197G0026' => 'smo',
		'Solyc03g019730.4' => 'sly',
		'Sopen03g029890' => 'spe',
		'Sopen06g028370' => 'spe',
		'Sp6g12760' => 'spa',
		'Sp7g22920' => 'spa',
		'TAR371G0381' => 'tar',
		'TAR629G1553' => 'tar',
		'THA.LOC104806080' => 'tha',
		'Thecc.03G131800' => 'tca',
		'Thhalv10025730m.g' => 'esa',
		'TPR.G12790' => 'tpr',
		'TWI23G1308' => 'twi',
		'unitig_22.g6250' => 'ugi',
		'unitig_22.g6251' => 'ugi',
		'vmacro19126' => 'vma',
		'VMungo0251G2558' => 'vmu',
		'Zm00001eb169400' => 'zma'
	)
)
$data_type = 'gene_family'
$gf_id = 'HOM05D004514'
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D004514'
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$subfamily_family_types = array(
	(int) 0 => 'ORTHOFAM'
)
$parental_family_types = array(
	(int) 0 => 'HOMFAM'
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$allowed_data_types = array(
	'GO' => 'Gene Ontology',
	'INTERPRO' => 'InterPro',
	'GENE_FAMILY' => 'Gene Family'
)
$data_identifier_value = 'HOM05D004514'
$data_identifier_description = ''
$adt_title = 'Gene Family'
$adt = 'GENE_FAMILY'
$is_selected = 'selected='selected''
$parameter = array(
	'data_type' => 'GENE_FAMILY',
	'data_value' => 'HOM05D004514'
)
include - APP/View/Tools/similarity_heatmap.ctp, line 77
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 151

Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]
Code Context
                    <label>Source(s)</label>

                    <select class='form form-select' name='ontology_source_group' id='ontology_source_group'>

                        <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D004514',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '160',
		'num_species' => '100'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'gene_selection' => array(
		'parameters' => array(
			(int) 0 => array(
				[maximum depth reached]
			)
		),
		'genes' => array(
			'A01p16230' => 'bna',
			'A03p68150' => 'bna',
			'A04p20440' => 'bna',
			'A09p34540' => 'bna',
			'Aa31LG7G10850' => 'aar',
			'AagrBONN_evm.TU.Sc2ySwM_117.2260' => 'aag',
			'Actinidia18339' => 'ach',
			'Actinidia25561' => 'ach',
			'Ah.11g044000' => 'amhyb',
			'AL7G28260' => 'aly',
			'AL8G24840' => 'aly',
			'Aqoxy5G03306' => 'aox',
			'arahy.Tifrunner.gnm1.ann1.C7Z4ET' => 'arhy',
			'arahy.Tifrunner.gnm1.ann1.PL1S0I' => 'arhy',
			'arahy.Tifrunner.gnm1.ann1.V9PUN9' => 'arhy',
			'AT4G24940' => 'ath',
			'AT5G50580' => 'ath',
			'AT5G50680' => 'ath',
			'ATR0561G084' => 'atr',
			'Atru.chr5.373' => 'acertr',
			'Atru.chr6.1825' => 'acertr',
			'Atru.chr6.1826' => 'acertr',
			'AUR62020635' => 'cqu',
			'AUR62038747' => 'cqu',
			'BcaB03g12450' => 'bca',
			'BcaC04g20593' => 'bca',
			'BcaNung07127' => 'bca',
			'BolC1t01951H' => 'bol',
			'BolC8t48592H' => 'bol',
			'BolC9t57057H' => 'bol',
			'BraA01t01559Z' => 'bra',
			'BraA01t02652Z' => 'bra',
			'C01p20220' => 'bna',
			'C09p41720' => 'bna',
			'CAN.G481.2' => 'can',
			'CAN.G65.55' => 'can',
			'CAN.G861.4' => 'can',
			'CAN.G951.2' => 'can',
			'CAN.G982.17' => 'can',
			'CANSAT80G0288' => 'cansat',
			'CANSAT80G1302' => 'cansat',
			'CARHR232340' => 'chi',
			'CARHR257690' => 'chi',
			'Carub.0007s1612' => 'cru',
			'Carub.0008s1067' => 'cru',
			'Ca_17561_v3' => 'car',
			'CBR_g45419' => 'cbr',
			'Cc01_g02400' => 'ccan',
			'CDE06G0772' => 'cde',
			'Cfa024556' => 'cfa',
			'Ciclev10032114m.g' => 'ccl',
			'CiPaw.12G044700' => 'cil',
			'ClCG03G003890' => 'cla',
			'COL.COLO4_06539' => 'col',
			'Cpa.g.sc1141.1' => 'cpa',
			'Cpa.g.sc807.6' => 'cpa',
			'Cre09.g408550' => 'cre',
			'CsaV3_1G009770' => 'csa',
			'CSS0037403' => 'camsi',
			'DCAR_016379' => 'dca',
			'Dinv23167' => 'din',
			'Duzib084G0819' => 'dzi',
			'ECA232G1789' => 'eca',
			'EL10Ac2g03710' => 'bvu',
			'Eucgr.K02707' => 'egr',
			'FAN04G1407' => 'fan',
			'FAN08G2687' => 'fan',
			'FAN13G0104' => 'fan',
			'FAN18G1834' => 'fan',
			'FvH4_5g08600' => 'fve',
			'Glyma.05G204000' => 'gma',
			'Glyma.08G011400' => 'gma',
			'Gohir.A03G054600' => 'ghi',
			'Gohir.A12G190300' => 'ghi',
			'Gohir.D03G112233' => 'ghi',
			'Gohir.D12G192600' => 'ghi',
			'Gorai.003G118500' => 'gra',
			'Gorai.008G207100' => 'gra',
			'GSVIVG01008554001' => 'vvi',
			'HanXRQChr09g0273381' => 'han',
			'Haze_07164' => 'cav',
			'Hma1.2p1_0014F.1_g009230' => 'hma',
			'HPP92_009725' => 'vpl',
			'Hund02453' => 'sun',
			'Lalb_Chr07g0183531' => 'lal',
			'Lalb_Chr12g0202281' => 'lal',
			'Lj4g0011293' => 'lja',
			'Lj4g0022972' => 'lja',
			'Lj5C94G12' => 'lonja',
			'Lsat_1_v5_gn_3_53020' => 'lsa',
			'Lsat_1_v5_gn_4_81560' => 'lsa',
			'Lsat_1_v5_gn_9_91580' => 'lsa',
			'Manes.06G121000' => 'mes',
			'Manes.14G049500' => 'mes',
			'Mapoly0059s0079' => 'mpo',
			'MBI11_g22694_MAGBIO' => 'mbi',
			'MCO09G781' => 'mco',
			'MD06G1138700' => 'mdo',
			'MD14G1154700' => 'mdo',
			'Medtr8g096740' => 'mtr',
			'MELO3C002371.2' => 'cme',
			'Migut.I00550' => 'egut',
			'MSTRG.11268' => 'ama',
			'Nitab4.5_0000477g0040' => 'nta',
			'Nitab4.5_0000854g0050' => 'nta',
			'Nitab4.5_0003367g0080' => 'nta',
			'Nitab4.5_0010179g0030' => 'nta',
			'Nn1g05105' => 'nnu',
			'Nn7g36518' => 'nnu',
			'Oeu058090.2' => 'oeu',
			'Os11g0497000' => 'osa',
			'Peaxi162Scf00089g00124' => 'pax',
			'Peaxi162Scf00763g00222' => 'pax',
			'PGR044G2046' => 'pgr',
			'PGR119G0827' => 'pgr',
			'PGSC0003DMG400015268' => 'stu',
			'PGSC0003DMG400026973' => 'stu',
			'Phvul.002G285900' => 'pvu',
			'Potri.012G100800' => 'ptr',
			'Potri.015G099000' => 'ptr',
			'Pp3c21_6470' => 'ppa',
			'PRCOL_00001407' => 'pco',
			'Prupe.5G148900' => 'ppe',
			'Psat7g036440' => 'psa',
			'PSO017G0632' => 'pso',
			'PSO478G4665' => 'pso',
			'QL10p002475' => 'qlo',
			'RcHm_v2.0_Chr7g0189801' => 'rch',
			'Rhsim08G0191700' => 'rsi',
			'Sabra12G0074100' => 'sbr',
			'Sabra15G0119900' => 'sbr',
			'SalBow5G3630' => 'sbo',
			'SalBow5G5364' => 'sbo',
			'Sc04g0000510' => 'sci',
			'Sed0016514' => 'sed',
			'Sed0020700' => 'sed',
			'SEGI_08180' => 'sgi',
			'SEGI_14500' => 'sgi',
			'SEGI_25223' => 'sgi',
			'SGA_v2.0_scaffold383G50415' => 'sas',
			'SGA_v2.0_scaffold40G15556' => 'sas',
			'SHI10691' => 'shi',
			'SMO197G0026' => 'smo',
			'Solyc03g019730.4' => 'sly',
			'Sopen03g029890' => 'spe',
			'Sopen06g028370' => 'spe',
			'Sp6g12760' => 'spa',
			'Sp7g22920' => 'spa',
			'TAR371G0381' => 'tar',
			'TAR629G1553' => 'tar',
			'THA.LOC104806080' => 'tha',
			'Thecc.03G131800' => 'tca',
			'Thhalv10025730m.g' => 'esa',
			'TPR.G12790' => 'tpr',
			'TWI23G1308' => 'twi',
			'unitig_22.g6250' => 'ugi',
			'unitig_22.g6251' => 'ugi',
			'vmacro19126' => 'vma',
			'VMungo0251G2558' => 'vmu',
			'Zm00001eb169400' => 'zma'
		)
	),
	'data_type' => 'gene_family',
	'gf_id' => 'HOM05D004514',
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D004514'
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'subfamily_family_types' => array(
		(int) 0 => 'ORTHOFAM'
	),
	'parental_family_types' => array(
		(int) 0 => 'HOMFAM'
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'allowed_data_types' => array(
		'GO' => 'Gene Ontology',
		'INTERPRO' => 'InterPro',
		'GENE_FAMILY' => 'Gene Family'
	)
)
$sidebar_info = array(
	'gf_id' => 'HOM05D004514',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '160',
	'num_species' => '100'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$gene_selection = array(
	'parameters' => array(
		(int) 0 => array(
			'data_type' => 'GENE_FAMILY',
			'data_value' => 'HOM05D004514'
		)
	),
	'genes' => array(
		'A01p16230' => 'bna',
		'A03p68150' => 'bna',
		'A04p20440' => 'bna',
		'A09p34540' => 'bna',
		'Aa31LG7G10850' => 'aar',
		'AagrBONN_evm.TU.Sc2ySwM_117.2260' => 'aag',
		'Actinidia18339' => 'ach',
		'Actinidia25561' => 'ach',
		'Ah.11g044000' => 'amhyb',
		'AL7G28260' => 'aly',
		'AL8G24840' => 'aly',
		'Aqoxy5G03306' => 'aox',
		'arahy.Tifrunner.gnm1.ann1.C7Z4ET' => 'arhy',
		'arahy.Tifrunner.gnm1.ann1.PL1S0I' => 'arhy',
		'arahy.Tifrunner.gnm1.ann1.V9PUN9' => 'arhy',
		'AT4G24940' => 'ath',
		'AT5G50580' => 'ath',
		'AT5G50680' => 'ath',
		'ATR0561G084' => 'atr',
		'Atru.chr5.373' => 'acertr',
		'Atru.chr6.1825' => 'acertr',
		'Atru.chr6.1826' => 'acertr',
		'AUR62020635' => 'cqu',
		'AUR62038747' => 'cqu',
		'BcaB03g12450' => 'bca',
		'BcaC04g20593' => 'bca',
		'BcaNung07127' => 'bca',
		'BolC1t01951H' => 'bol',
		'BolC8t48592H' => 'bol',
		'BolC9t57057H' => 'bol',
		'BraA01t01559Z' => 'bra',
		'BraA01t02652Z' => 'bra',
		'C01p20220' => 'bna',
		'C09p41720' => 'bna',
		'CAN.G481.2' => 'can',
		'CAN.G65.55' => 'can',
		'CAN.G861.4' => 'can',
		'CAN.G951.2' => 'can',
		'CAN.G982.17' => 'can',
		'CANSAT80G0288' => 'cansat',
		'CANSAT80G1302' => 'cansat',
		'CARHR232340' => 'chi',
		'CARHR257690' => 'chi',
		'Carub.0007s1612' => 'cru',
		'Carub.0008s1067' => 'cru',
		'Ca_17561_v3' => 'car',
		'CBR_g45419' => 'cbr',
		'Cc01_g02400' => 'ccan',
		'CDE06G0772' => 'cde',
		'Cfa024556' => 'cfa',
		'Ciclev10032114m.g' => 'ccl',
		'CiPaw.12G044700' => 'cil',
		'ClCG03G003890' => 'cla',
		'COL.COLO4_06539' => 'col',
		'Cpa.g.sc1141.1' => 'cpa',
		'Cpa.g.sc807.6' => 'cpa',
		'Cre09.g408550' => 'cre',
		'CsaV3_1G009770' => 'csa',
		'CSS0037403' => 'camsi',
		'DCAR_016379' => 'dca',
		'Dinv23167' => 'din',
		'Duzib084G0819' => 'dzi',
		'ECA232G1789' => 'eca',
		'EL10Ac2g03710' => 'bvu',
		'Eucgr.K02707' => 'egr',
		'FAN04G1407' => 'fan',
		'FAN08G2687' => 'fan',
		'FAN13G0104' => 'fan',
		'FAN18G1834' => 'fan',
		'FvH4_5g08600' => 'fve',
		'Glyma.05G204000' => 'gma',
		'Glyma.08G011400' => 'gma',
		'Gohir.A03G054600' => 'ghi',
		'Gohir.A12G190300' => 'ghi',
		'Gohir.D03G112233' => 'ghi',
		'Gohir.D12G192600' => 'ghi',
		'Gorai.003G118500' => 'gra',
		'Gorai.008G207100' => 'gra',
		'GSVIVG01008554001' => 'vvi',
		'HanXRQChr09g0273381' => 'han',
		'Haze_07164' => 'cav',
		'Hma1.2p1_0014F.1_g009230' => 'hma',
		'HPP92_009725' => 'vpl',
		'Hund02453' => 'sun',
		'Lalb_Chr07g0183531' => 'lal',
		'Lalb_Chr12g0202281' => 'lal',
		'Lj4g0011293' => 'lja',
		'Lj4g0022972' => 'lja',
		'Lj5C94G12' => 'lonja',
		'Lsat_1_v5_gn_3_53020' => 'lsa',
		'Lsat_1_v5_gn_4_81560' => 'lsa',
		'Lsat_1_v5_gn_9_91580' => 'lsa',
		'Manes.06G121000' => 'mes',
		'Manes.14G049500' => 'mes',
		'Mapoly0059s0079' => 'mpo',
		'MBI11_g22694_MAGBIO' => 'mbi',
		'MCO09G781' => 'mco',
		'MD06G1138700' => 'mdo',
		'MD14G1154700' => 'mdo',
		'Medtr8g096740' => 'mtr',
		'MELO3C002371.2' => 'cme',
		'Migut.I00550' => 'egut',
		'MSTRG.11268' => 'ama',
		'Nitab4.5_0000477g0040' => 'nta',
		'Nitab4.5_0000854g0050' => 'nta',
		'Nitab4.5_0003367g0080' => 'nta',
		'Nitab4.5_0010179g0030' => 'nta',
		'Nn1g05105' => 'nnu',
		'Nn7g36518' => 'nnu',
		'Oeu058090.2' => 'oeu',
		'Os11g0497000' => 'osa',
		'Peaxi162Scf00089g00124' => 'pax',
		'Peaxi162Scf00763g00222' => 'pax',
		'PGR044G2046' => 'pgr',
		'PGR119G0827' => 'pgr',
		'PGSC0003DMG400015268' => 'stu',
		'PGSC0003DMG400026973' => 'stu',
		'Phvul.002G285900' => 'pvu',
		'Potri.012G100800' => 'ptr',
		'Potri.015G099000' => 'ptr',
		'Pp3c21_6470' => 'ppa',
		'PRCOL_00001407' => 'pco',
		'Prupe.5G148900' => 'ppe',
		'Psat7g036440' => 'psa',
		'PSO017G0632' => 'pso',
		'PSO478G4665' => 'pso',
		'QL10p002475' => 'qlo',
		'RcHm_v2.0_Chr7g0189801' => 'rch',
		'Rhsim08G0191700' => 'rsi',
		'Sabra12G0074100' => 'sbr',
		'Sabra15G0119900' => 'sbr',
		'SalBow5G3630' => 'sbo',
		'SalBow5G5364' => 'sbo',
		'Sc04g0000510' => 'sci',
		'Sed0016514' => 'sed',
		'Sed0020700' => 'sed',
		'SEGI_08180' => 'sgi',
		'SEGI_14500' => 'sgi',
		'SEGI_25223' => 'sgi',
		'SGA_v2.0_scaffold383G50415' => 'sas',
		'SGA_v2.0_scaffold40G15556' => 'sas',
		'SHI10691' => 'shi',
		'SMO197G0026' => 'smo',
		'Solyc03g019730.4' => 'sly',
		'Sopen03g029890' => 'spe',
		'Sopen06g028370' => 'spe',
		'Sp6g12760' => 'spa',
		'Sp7g22920' => 'spa',
		'TAR371G0381' => 'tar',
		'TAR629G1553' => 'tar',
		'THA.LOC104806080' => 'tha',
		'Thecc.03G131800' => 'tca',
		'Thhalv10025730m.g' => 'esa',
		'TPR.G12790' => 'tpr',
		'TWI23G1308' => 'twi',
		'unitig_22.g6250' => 'ugi',
		'unitig_22.g6251' => 'ugi',
		'vmacro19126' => 'vma',
		'VMungo0251G2558' => 'vmu',
		'Zm00001eb169400' => 'zma'
	)
)
$data_type = 'gene_family'
$gf_id = 'HOM05D004514'
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D004514'
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$subfamily_family_types = array(
	(int) 0 => 'ORTHOFAM'
)
$parental_family_types = array(
	(int) 0 => 'HOMFAM'
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$allowed_data_types = array(
	'GO' => 'Gene Ontology',
	'INTERPRO' => 'InterPro',
	'GENE_FAMILY' => 'Gene Family'
)
$data_identifier_value = 'HOM05D004514'
$data_identifier_description = ''
$adt_title = 'Gene Family'
$adt = 'GENE_FAMILY'
$is_selected = 'selected='selected''
$parameter = array(
	'data_type' => 'GENE_FAMILY',
	'data_value' => 'HOM05D004514'
)
include - APP/View/Tools/similarity_heatmap.ctp, line 77
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 151

Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]
Code Context
                    <label>Source(s)</label>

                    <select class='form form-select' name='ontology_source_group' id='ontology_source_group'>

                        <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D004514',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '160',
		'num_species' => '100'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'gene_selection' => array(
		'parameters' => array(
			(int) 0 => array(
				[maximum depth reached]
			)
		),
		'genes' => array(
			'A01p16230' => 'bna',
			'A03p68150' => 'bna',
			'A04p20440' => 'bna',
			'A09p34540' => 'bna',
			'Aa31LG7G10850' => 'aar',
			'AagrBONN_evm.TU.Sc2ySwM_117.2260' => 'aag',
			'Actinidia18339' => 'ach',
			'Actinidia25561' => 'ach',
			'Ah.11g044000' => 'amhyb',
			'AL7G28260' => 'aly',
			'AL8G24840' => 'aly',
			'Aqoxy5G03306' => 'aox',
			'arahy.Tifrunner.gnm1.ann1.C7Z4ET' => 'arhy',
			'arahy.Tifrunner.gnm1.ann1.PL1S0I' => 'arhy',
			'arahy.Tifrunner.gnm1.ann1.V9PUN9' => 'arhy',
			'AT4G24940' => 'ath',
			'AT5G50580' => 'ath',
			'AT5G50680' => 'ath',
			'ATR0561G084' => 'atr',
			'Atru.chr5.373' => 'acertr',
			'Atru.chr6.1825' => 'acertr',
			'Atru.chr6.1826' => 'acertr',
			'AUR62020635' => 'cqu',
			'AUR62038747' => 'cqu',
			'BcaB03g12450' => 'bca',
			'BcaC04g20593' => 'bca',
			'BcaNung07127' => 'bca',
			'BolC1t01951H' => 'bol',
			'BolC8t48592H' => 'bol',
			'BolC9t57057H' => 'bol',
			'BraA01t01559Z' => 'bra',
			'BraA01t02652Z' => 'bra',
			'C01p20220' => 'bna',
			'C09p41720' => 'bna',
			'CAN.G481.2' => 'can',
			'CAN.G65.55' => 'can',
			'CAN.G861.4' => 'can',
			'CAN.G951.2' => 'can',
			'CAN.G982.17' => 'can',
			'CANSAT80G0288' => 'cansat',
			'CANSAT80G1302' => 'cansat',
			'CARHR232340' => 'chi',
			'CARHR257690' => 'chi',
			'Carub.0007s1612' => 'cru',
			'Carub.0008s1067' => 'cru',
			'Ca_17561_v3' => 'car',
			'CBR_g45419' => 'cbr',
			'Cc01_g02400' => 'ccan',
			'CDE06G0772' => 'cde',
			'Cfa024556' => 'cfa',
			'Ciclev10032114m.g' => 'ccl',
			'CiPaw.12G044700' => 'cil',
			'ClCG03G003890' => 'cla',
			'COL.COLO4_06539' => 'col',
			'Cpa.g.sc1141.1' => 'cpa',
			'Cpa.g.sc807.6' => 'cpa',
			'Cre09.g408550' => 'cre',
			'CsaV3_1G009770' => 'csa',
			'CSS0037403' => 'camsi',
			'DCAR_016379' => 'dca',
			'Dinv23167' => 'din',
			'Duzib084G0819' => 'dzi',
			'ECA232G1789' => 'eca',
			'EL10Ac2g03710' => 'bvu',
			'Eucgr.K02707' => 'egr',
			'FAN04G1407' => 'fan',
			'FAN08G2687' => 'fan',
			'FAN13G0104' => 'fan',
			'FAN18G1834' => 'fan',
			'FvH4_5g08600' => 'fve',
			'Glyma.05G204000' => 'gma',
			'Glyma.08G011400' => 'gma',
			'Gohir.A03G054600' => 'ghi',
			'Gohir.A12G190300' => 'ghi',
			'Gohir.D03G112233' => 'ghi',
			'Gohir.D12G192600' => 'ghi',
			'Gorai.003G118500' => 'gra',
			'Gorai.008G207100' => 'gra',
			'GSVIVG01008554001' => 'vvi',
			'HanXRQChr09g0273381' => 'han',
			'Haze_07164' => 'cav',
			'Hma1.2p1_0014F.1_g009230' => 'hma',
			'HPP92_009725' => 'vpl',
			'Hund02453' => 'sun',
			'Lalb_Chr07g0183531' => 'lal',
			'Lalb_Chr12g0202281' => 'lal',
			'Lj4g0011293' => 'lja',
			'Lj4g0022972' => 'lja',
			'Lj5C94G12' => 'lonja',
			'Lsat_1_v5_gn_3_53020' => 'lsa',
			'Lsat_1_v5_gn_4_81560' => 'lsa',
			'Lsat_1_v5_gn_9_91580' => 'lsa',
			'Manes.06G121000' => 'mes',
			'Manes.14G049500' => 'mes',
			'Mapoly0059s0079' => 'mpo',
			'MBI11_g22694_MAGBIO' => 'mbi',
			'MCO09G781' => 'mco',
			'MD06G1138700' => 'mdo',
			'MD14G1154700' => 'mdo',
			'Medtr8g096740' => 'mtr',
			'MELO3C002371.2' => 'cme',
			'Migut.I00550' => 'egut',
			'MSTRG.11268' => 'ama',
			'Nitab4.5_0000477g0040' => 'nta',
			'Nitab4.5_0000854g0050' => 'nta',
			'Nitab4.5_0003367g0080' => 'nta',
			'Nitab4.5_0010179g0030' => 'nta',
			'Nn1g05105' => 'nnu',
			'Nn7g36518' => 'nnu',
			'Oeu058090.2' => 'oeu',
			'Os11g0497000' => 'osa',
			'Peaxi162Scf00089g00124' => 'pax',
			'Peaxi162Scf00763g00222' => 'pax',
			'PGR044G2046' => 'pgr',
			'PGR119G0827' => 'pgr',
			'PGSC0003DMG400015268' => 'stu',
			'PGSC0003DMG400026973' => 'stu',
			'Phvul.002G285900' => 'pvu',
			'Potri.012G100800' => 'ptr',
			'Potri.015G099000' => 'ptr',
			'Pp3c21_6470' => 'ppa',
			'PRCOL_00001407' => 'pco',
			'Prupe.5G148900' => 'ppe',
			'Psat7g036440' => 'psa',
			'PSO017G0632' => 'pso',
			'PSO478G4665' => 'pso',
			'QL10p002475' => 'qlo',
			'RcHm_v2.0_Chr7g0189801' => 'rch',
			'Rhsim08G0191700' => 'rsi',
			'Sabra12G0074100' => 'sbr',
			'Sabra15G0119900' => 'sbr',
			'SalBow5G3630' => 'sbo',
			'SalBow5G5364' => 'sbo',
			'Sc04g0000510' => 'sci',
			'Sed0016514' => 'sed',
			'Sed0020700' => 'sed',
			'SEGI_08180' => 'sgi',
			'SEGI_14500' => 'sgi',
			'SEGI_25223' => 'sgi',
			'SGA_v2.0_scaffold383G50415' => 'sas',
			'SGA_v2.0_scaffold40G15556' => 'sas',
			'SHI10691' => 'shi',
			'SMO197G0026' => 'smo',
			'Solyc03g019730.4' => 'sly',
			'Sopen03g029890' => 'spe',
			'Sopen06g028370' => 'spe',
			'Sp6g12760' => 'spa',
			'Sp7g22920' => 'spa',
			'TAR371G0381' => 'tar',
			'TAR629G1553' => 'tar',
			'THA.LOC104806080' => 'tha',
			'Thecc.03G131800' => 'tca',
			'Thhalv10025730m.g' => 'esa',
			'TPR.G12790' => 'tpr',
			'TWI23G1308' => 'twi',
			'unitig_22.g6250' => 'ugi',
			'unitig_22.g6251' => 'ugi',
			'vmacro19126' => 'vma',
			'VMungo0251G2558' => 'vmu',
			'Zm00001eb169400' => 'zma'
		)
	),
	'data_type' => 'gene_family',
	'gf_id' => 'HOM05D004514',
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D004514'
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'subfamily_family_types' => array(
		(int) 0 => 'ORTHOFAM'
	),
	'parental_family_types' => array(
		(int) 0 => 'HOMFAM'
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'allowed_data_types' => array(
		'GO' => 'Gene Ontology',
		'INTERPRO' => 'InterPro',
		'GENE_FAMILY' => 'Gene Family'
	)
)
$sidebar_info = array(
	'gf_id' => 'HOM05D004514',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '160',
	'num_species' => '100'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$gene_selection = array(
	'parameters' => array(
		(int) 0 => array(
			'data_type' => 'GENE_FAMILY',
			'data_value' => 'HOM05D004514'
		)
	),
	'genes' => array(
		'A01p16230' => 'bna',
		'A03p68150' => 'bna',
		'A04p20440' => 'bna',
		'A09p34540' => 'bna',
		'Aa31LG7G10850' => 'aar',
		'AagrBONN_evm.TU.Sc2ySwM_117.2260' => 'aag',
		'Actinidia18339' => 'ach',
		'Actinidia25561' => 'ach',
		'Ah.11g044000' => 'amhyb',
		'AL7G28260' => 'aly',
		'AL8G24840' => 'aly',
		'Aqoxy5G03306' => 'aox',
		'arahy.Tifrunner.gnm1.ann1.C7Z4ET' => 'arhy',
		'arahy.Tifrunner.gnm1.ann1.PL1S0I' => 'arhy',
		'arahy.Tifrunner.gnm1.ann1.V9PUN9' => 'arhy',
		'AT4G24940' => 'ath',
		'AT5G50580' => 'ath',
		'AT5G50680' => 'ath',
		'ATR0561G084' => 'atr',
		'Atru.chr5.373' => 'acertr',
		'Atru.chr6.1825' => 'acertr',
		'Atru.chr6.1826' => 'acertr',
		'AUR62020635' => 'cqu',
		'AUR62038747' => 'cqu',
		'BcaB03g12450' => 'bca',
		'BcaC04g20593' => 'bca',
		'BcaNung07127' => 'bca',
		'BolC1t01951H' => 'bol',
		'BolC8t48592H' => 'bol',
		'BolC9t57057H' => 'bol',
		'BraA01t01559Z' => 'bra',
		'BraA01t02652Z' => 'bra',
		'C01p20220' => 'bna',
		'C09p41720' => 'bna',
		'CAN.G481.2' => 'can',
		'CAN.G65.55' => 'can',
		'CAN.G861.4' => 'can',
		'CAN.G951.2' => 'can',
		'CAN.G982.17' => 'can',
		'CANSAT80G0288' => 'cansat',
		'CANSAT80G1302' => 'cansat',
		'CARHR232340' => 'chi',
		'CARHR257690' => 'chi',
		'Carub.0007s1612' => 'cru',
		'Carub.0008s1067' => 'cru',
		'Ca_17561_v3' => 'car',
		'CBR_g45419' => 'cbr',
		'Cc01_g02400' => 'ccan',
		'CDE06G0772' => 'cde',
		'Cfa024556' => 'cfa',
		'Ciclev10032114m.g' => 'ccl',
		'CiPaw.12G044700' => 'cil',
		'ClCG03G003890' => 'cla',
		'COL.COLO4_06539' => 'col',
		'Cpa.g.sc1141.1' => 'cpa',
		'Cpa.g.sc807.6' => 'cpa',
		'Cre09.g408550' => 'cre',
		'CsaV3_1G009770' => 'csa',
		'CSS0037403' => 'camsi',
		'DCAR_016379' => 'dca',
		'Dinv23167' => 'din',
		'Duzib084G0819' => 'dzi',
		'ECA232G1789' => 'eca',
		'EL10Ac2g03710' => 'bvu',
		'Eucgr.K02707' => 'egr',
		'FAN04G1407' => 'fan',
		'FAN08G2687' => 'fan',
		'FAN13G0104' => 'fan',
		'FAN18G1834' => 'fan',
		'FvH4_5g08600' => 'fve',
		'Glyma.05G204000' => 'gma',
		'Glyma.08G011400' => 'gma',
		'Gohir.A03G054600' => 'ghi',
		'Gohir.A12G190300' => 'ghi',
		'Gohir.D03G112233' => 'ghi',
		'Gohir.D12G192600' => 'ghi',
		'Gorai.003G118500' => 'gra',
		'Gorai.008G207100' => 'gra',
		'GSVIVG01008554001' => 'vvi',
		'HanXRQChr09g0273381' => 'han',
		'Haze_07164' => 'cav',
		'Hma1.2p1_0014F.1_g009230' => 'hma',
		'HPP92_009725' => 'vpl',
		'Hund02453' => 'sun',
		'Lalb_Chr07g0183531' => 'lal',
		'Lalb_Chr12g0202281' => 'lal',
		'Lj4g0011293' => 'lja',
		'Lj4g0022972' => 'lja',
		'Lj5C94G12' => 'lonja',
		'Lsat_1_v5_gn_3_53020' => 'lsa',
		'Lsat_1_v5_gn_4_81560' => 'lsa',
		'Lsat_1_v5_gn_9_91580' => 'lsa',
		'Manes.06G121000' => 'mes',
		'Manes.14G049500' => 'mes',
		'Mapoly0059s0079' => 'mpo',
		'MBI11_g22694_MAGBIO' => 'mbi',
		'MCO09G781' => 'mco',
		'MD06G1138700' => 'mdo',
		'MD14G1154700' => 'mdo',
		'Medtr8g096740' => 'mtr',
		'MELO3C002371.2' => 'cme',
		'Migut.I00550' => 'egut',
		'MSTRG.11268' => 'ama',
		'Nitab4.5_0000477g0040' => 'nta',
		'Nitab4.5_0000854g0050' => 'nta',
		'Nitab4.5_0003367g0080' => 'nta',
		'Nitab4.5_0010179g0030' => 'nta',
		'Nn1g05105' => 'nnu',
		'Nn7g36518' => 'nnu',
		'Oeu058090.2' => 'oeu',
		'Os11g0497000' => 'osa',
		'Peaxi162Scf00089g00124' => 'pax',
		'Peaxi162Scf00763g00222' => 'pax',
		'PGR044G2046' => 'pgr',
		'PGR119G0827' => 'pgr',
		'PGSC0003DMG400015268' => 'stu',
		'PGSC0003DMG400026973' => 'stu',
		'Phvul.002G285900' => 'pvu',
		'Potri.012G100800' => 'ptr',
		'Potri.015G099000' => 'ptr',
		'Pp3c21_6470' => 'ppa',
		'PRCOL_00001407' => 'pco',
		'Prupe.5G148900' => 'ppe',
		'Psat7g036440' => 'psa',
		'PSO017G0632' => 'pso',
		'PSO478G4665' => 'pso',
		'QL10p002475' => 'qlo',
		'RcHm_v2.0_Chr7g0189801' => 'rch',
		'Rhsim08G0191700' => 'rsi',
		'Sabra12G0074100' => 'sbr',
		'Sabra15G0119900' => 'sbr',
		'SalBow5G3630' => 'sbo',
		'SalBow5G5364' => 'sbo',
		'Sc04g0000510' => 'sci',
		'Sed0016514' => 'sed',
		'Sed0020700' => 'sed',
		'SEGI_08180' => 'sgi',
		'SEGI_14500' => 'sgi',
		'SEGI_25223' => 'sgi',
		'SGA_v2.0_scaffold383G50415' => 'sas',
		'SGA_v2.0_scaffold40G15556' => 'sas',
		'SHI10691' => 'shi',
		'SMO197G0026' => 'smo',
		'Solyc03g019730.4' => 'sly',
		'Sopen03g029890' => 'spe',
		'Sopen06g028370' => 'spe',
		'Sp6g12760' => 'spa',
		'Sp7g22920' => 'spa',
		'TAR371G0381' => 'tar',
		'TAR629G1553' => 'tar',
		'THA.LOC104806080' => 'tha',
		'Thecc.03G131800' => 'tca',
		'Thhalv10025730m.g' => 'esa',
		'TPR.G12790' => 'tpr',
		'TWI23G1308' => 'twi',
		'unitig_22.g6250' => 'ugi',
		'unitig_22.g6251' => 'ugi',
		'vmacro19126' => 'vma',
		'VMungo0251G2558' => 'vmu',
		'Zm00001eb169400' => 'zma'
	)
)
$data_type = 'gene_family'
$gf_id = 'HOM05D004514'
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D004514'
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$subfamily_family_types = array(
	(int) 0 => 'ORTHOFAM'
)
$parental_family_types = array(
	(int) 0 => 'HOMFAM'
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$allowed_data_types = array(
	'GO' => 'Gene Ontology',
	'INTERPRO' => 'InterPro',
	'GENE_FAMILY' => 'Gene Family'
)
$data_identifier_value = 'HOM05D004514'
$data_identifier_description = ''
$adt_title = 'Gene Family'
$adt = 'GENE_FAMILY'
$is_selected = 'selected='selected''
$parameter = array(
	'data_type' => 'GENE_FAMILY',
	'data_value' => 'HOM05D004514'
)
include - APP/View/Tools/similarity_heatmap.ctp, line 77
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 151