Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 2.1e-126 455.7 224 100.0
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 3.0e-101 372.1 233 80.3
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 7.0e-98 360.9 235 76.6
Migut.J00039 Erythranthe guttata HOM05D005727 ORTHO05D007324 1.2e-94 350.1 230 77.0
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.4e-93 346.7 230 75.2
Actinidia20792 Actinidia chinensis HOM05D005727 ORTHO05D007324 6.8e-93 344.4 242 73.1
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 8.8e-93 344.0 231 74.9
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 2.6e-92 342.4 230 72.6
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 7.5e-92 340.9 235 74.5
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 1.3e-91 340.1 189 85.7
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 2.2e-91 339.3 235 74.0
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 2.2e-91 339.3 232 74.1
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 2.8e-91 339.0 230 73.5
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 2.8e-91 339.0 235 74.0
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 6.3e-91 337.8 221 75.1
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 1.4e-90 336.7 194 82.5
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 1.6e-89 333.2 216 74.1
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 1.6e-89 333.2 211 75.8
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 1.6e-89 333.2 235 70.6
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 2.7e-89 332.4 259 66.4
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 1.0e-88 330.5 234 73.1
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 1.3e-88 330.1 220 73.2
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 1.7e-88 329.7 211 75.4
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 2.9e-88 328.9 211 74.4
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 2.9e-88 328.9 220 74.1
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 5.0e-88 328.2 220 72.7
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 6.6e-88 327.8 215 73.0
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 4.3e-87 325.1 220 72.7
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 4.3e-87 325.1 220 72.7
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 4.3e-87 325.1 220 72.7
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 4.3e-87 325.1 258 67.4
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 4.3e-87 325.1 218 72.9
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 5.6e-87 324.7 212 73.6
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 9.5e-87 323.9 240 69.6
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 9.5e-87 323.9 213 73.7
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 1.6e-86 323.2 232 71.6
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 1.6e-86 323.2 211 74.4
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 2.8e-86 322.4 215 72.6
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 2.8e-86 322.4 211 73.0
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 4.7e-86 321.6 210 73.8
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 6.1e-86 321.2 213 71.8
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 6.1e-86 321.2 195 74.9
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 8.0e-86 320.9 223 68.6
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 8.0e-86 320.9 219 72.1
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 8.0e-86 320.9 212 72.6
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 3.0e-85 318.9 216 71.3
Actinidia32567 Actinidia chinensis HOM05D005727 ORTHO05D007324 5.2e-85 318.2 221 73.3
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 5.2e-85 318.2 211 70.6
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 6.8e-85 317.8 234 67.9
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 1.2e-84 317.0 217 71.0
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 2.6e-84 315.8 221 68.3
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 2.6e-84 315.8 237 69.6
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 3.4e-84 315.5 234 68.4
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 3.4e-84 315.5 232 67.7
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 3.4e-84 315.5 210 73.3
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 3.4e-84 315.5 228 71.1
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 4.4e-84 315.1 188 79.8
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 4.4e-84 315.1 194 76.3
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 1.7e-83 313.2 200 74.5
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 2.9e-83 312.4 218 69.3
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 4.9e-83 311.6 228 68.9
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 6.4e-83 311.2 236 68.2
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 6.4e-83 311.2 212 71.2
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 8.3e-83 310.8 213 70.0
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 8.3e-83 310.8 217 70.0
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 2.4e-82 309.3 218 69.7
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 7.0e-82 307.8 196 73.0
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 9.2e-82 307.4 197 73.6
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 1.6e-81 306.6 234 65.8
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 3.5e-81 305.4 188 75.0
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 3.5e-81 305.4 220 71.8
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 3.5e-81 305.4 218 67.0
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 3.5e-81 305.4 222 69.4
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 4.6e-81 305.1 220 71.8
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 5.9e-81 304.7 218 66.5
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 1.0e-80 303.9 188 74.5
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 1.0e-80 303.9 188 74.5
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 1.0e-80 303.9 220 71.4
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.0e-80 303.9 220 71.4
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 1.3e-80 303.5 210 71.9
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 2.3e-80 302.8 232 64.7
Carub.0003s0787 Capsella rubella HOM05D005727 ORTHO05D007324 3.0e-80 302.4 221 67.9
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 3.9e-80 302.0 188 74.5
CARHR083040 Cardamine hirsuta HOM05D005727 ORTHO05D007324 1.9e-79 299.7 210 68.1
BcaC05g29610 Brassica carinata HOM05D005727 ORTHO05D007324 2.5e-79 299.3 219 65.8
A05p40060 Brassica napus HOM05D005727 ORTHO05D007324 2.5e-79 299.3 219 65.8
C05p59120 Brassica napus HOM05D005727 ORTHO05D007324 2.5e-79 299.3 219 65.8
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 2.5e-79 299.3 188 73.4
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 2.5e-79 299.3 213 69.5
BolC5t34584H Brassica oleracea HOM05D005727 ORTHO05D007324 5.6e-79 298.1 219 65.3
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 5.6e-79 298.1 221 67.4
Sp3g07170 Schrenkiella parvula HOM05D005727 ORTHO05D007324 9.5e-79 297.4 219 67.1
AT3G08740 Arabidopsis thaliana HOM05D005727 ORTHO05D007324 1.2e-78 297.0 218 67.0
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 1.6e-78 296.6 246 62.2
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.8e-78 295.8 190 75.8
AL3G19740 Arabidopsis lyrata HOM05D005727 ORTHO05D007324 3.6e-78 295.4 218 66.5
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 3.6e-78 295.4 192 69.8
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 4.7e-78 295.0 208 67.8
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 4.7e-78 295.0 192 69.3
Thhalv10023841m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 6.2e-78 294.7 202 68.3
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 8.0e-78 294.3 238 66.4
Thhalv10022392m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 5.2e-77 291.6 193 69.4
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 8.9e-77 290.8 233 62.7
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 5.8e-76 288.1 210 66.7
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 3.7e-75 285.4 163 84.0
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 4.6e-73 278.5 212 65.1
vmacro08938 Vaccinium macrocarpon HOM05D005727 ORTHO05D007324 6.0e-73 278.1 306 52.9
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 1.0e-72 277.3 165 79.4
BcaC01g05776 Brassica carinata HOM05D005727 ORTHO05D007324 6.6e-72 274.6 186 72.0
unitig_578.g15912 Utricularia gibba HOM05D005727 ORTHO05D007324 1.9e-71 273.1 190 73.2
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 8.1e-70 267.7 221 59.7
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 5.8e-68 261.5 199 66.3
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 1.7e-67 260.0 221 60.2
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 2.9e-67 259.2 181 69.1
Aa31LG5G11490 Aethionema arabicum HOM05D005727 ORTHO05D007324 3.7e-67 258.8 186 64.5
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 4.9e-67 258.5 183 61.7
Rhsim04G0121700 Rhododendron simsii HOM05D005727 ORTHO05D007324 3.2e-66 255.8 362 43.4
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 1.9e-63 246.5 188 58.0
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 8.9e-61 237.7 227 49.8
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 9.2e-58 227.6 182 58.2
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 1.3e-51 207.2 182 55.5
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 2.5e-47 193.0 131 64.9
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 2.6e-44 183.0 104 82.7
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 1.3e-43 180.6 127 64.6
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 4.3e-39 165.6 104 73.1
CDE04G3002 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 3.1e-37 159.5 120 68.3
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 1.9e-23 113.6 182 32.4
Zm00001eb406060 Zea mays HOM05D005727 ORTHO05D007324 3.7e-22 109.4 85 62.4
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 4.8e-22 109.0 183 31.1
PRCOL_00007056 Prasinoderma coloniale HOM05D005727 ORTHO05D007324 6.3e-22 108.6 166 38.6
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 6.9e-21 105.1 182 30.2
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 2.0e-20 103.6 183 29.5
CDE04G0740 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 7.6e-20 101.7 61 80.3
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 2.2e-19 100.1 182 26.9
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 2.2e-19 100.1 210 29.0
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 2.9e-19 99.8 177 29.4
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 6.5e-19 98.6 181 26.0
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 1.4e-18 97.4 164 30.5
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 2.5e-18 96.7 180 28.9
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 3.2e-18 96.3 180 28.9
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 7.2e-18 95.1 220 29.1
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 9.3e-18 94.7 214 26.2
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 9.3e-18 94.7 180 29.4
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 2.1e-17 93.6 180 28.9
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 4.6e-17 92.4 201 27.9
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 6.1e-17 92.0 180 28.3
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 7.9e-17 91.7 180 28.3
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 7.9e-17 91.7 183 27.3
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 1.0e-16 91.3 189 27.5
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 1.0e-16 91.3 183 30.6
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 1.8e-16 90.5 178 27.0
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 3.9e-16 89.4 209 26.8
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 6.7e-16 88.6 190 28.9
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 1.5e-15 87.4 214 27.6
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 1.9e-15 87.0 184 25.0
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 2.5e-15 86.7 180 27.8
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 2.5e-15 86.7 182 27.5
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 3.3e-15 86.3 182 27.5
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 4.3e-15 85.9 209 25.8
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 5.7e-15 85.5 180 27.2
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 7.4e-15 85.1 203 25.1
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 7.4e-15 85.1 181 29.8
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 2.2e-14 83.6 185 25.4
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 2.2e-14 83.6 180 26.7
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 2.2e-14 83.6 180 26.7
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 3.7e-14 82.8 165 30.3
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 8.2e-14 81.6 178 26.4
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 8.2e-14 81.6 178 26.4
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 8.2e-14 81.6 182 27.5
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 1.5e-12 77.4 208 26.0
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 2.6e-12 76.6 181 26.0
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 4.2e-10 69.3 179 24.6
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 2.7e-09 66.6 135 25.9
SEGI_29867 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 2.7e-09 66.6 68 50.0
Ciclev10010465m.g Citrus clementina HOM05D005727 ORTHO05D007324 3.3e-07 59.7 40 72.5


User provided reference genes

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